Wall clock time and date at job start Mon Mar 30 2020 02:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99999 * 2 1 4 4 H 1.48499 * 109.46776 * 269.99938 * 3 2 1 5 5 H 1.48498 * 109.47122 * 30.00005 * 3 2 1 6 6 H 1.48498 * 109.47179 * 150.00332 * 3 2 1 7 7 C 1.37881 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00352 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47052 * 59.99143 * 9 7 2 11 11 N 1.46909 * 109.46811 * 299.99790 * 9 7 2 12 12 C 1.50691 * 109.47520 * 180.02562 * 9 7 2 13 13 C 1.38672 * 120.41848 * 259.97906 * 12 9 7 14 14 C 1.38628 * 118.42475 * 180.02562 * 13 12 9 15 15 C 1.38223 * 119.16031 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.61920 * 180.02562 * 15 14 13 17 17 C 1.52990 * 117.50002 * 343.72836 * 16 15 14 18 18 C 1.52999 * 117.49984 * 275.06545 * 16 15 14 19 19 N 1.31856 * 120.76457 * 0.02562 * 15 14 13 20 20 C 1.31884 * 121.72497 * 359.97438 * 19 15 14 21 21 H 0.97001 * 119.99988 * 359.97438 * 1 2 3 22 22 H 1.00903 * 110.99803 * 300.00127 * 11 9 7 23 23 H 1.00904 * 110.99919 * 63.95446 * 11 9 7 24 24 H 1.08006 * 120.78702 * 359.97438 * 13 12 9 25 25 H 1.07996 * 120.42146 * 179.97438 * 14 13 12 26 26 H 1.09003 * 115.54546 * 129.39740 * 16 15 14 27 27 H 1.09004 * 117.49644 * 359.97438 * 17 16 15 28 28 H 1.09002 * 117.50438 * 145.01833 * 17 16 15 29 29 H 1.08995 * 117.49973 * 214.97790 * 18 16 15 30 30 H 1.08992 * 117.49778 * 359.97438 * 18 16 15 31 31 H 1.08001 * 119.62224 * 179.72558 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8896 11 7 0.4061 -2.5768 1.1998 12 6 2.2303 -3.6446 0.0018 13 6 2.5293 -4.3140 -1.1753 14 6 3.4355 -5.3620 -1.1265 15 6 4.0073 -5.7020 0.0851 16 6 4.9942 -6.8392 0.1499 17 6 5.0372 -7.8056 -1.0354 18 6 4.4324 -8.2546 0.2972 19 7 3.6994 -5.0431 1.1849 20 6 2.8417 -4.0412 1.1759 21 1 -0.4850 0.8401 0.0004 22 1 0.9638 -2.5251 2.0390 23 1 -0.3013 -1.8573 1.1908 24 1 2.0665 -4.0263 -2.1077 25 1 3.6915 -5.9057 -2.0238 26 1 5.9356 -6.6165 0.6522 27 1 4.3514 -7.6192 -1.8619 28 1 6.0068 -8.2192 -1.3127 29 1 5.0044 -8.9633 0.8960 30 1 3.3491 -8.3633 0.3477 31 1 2.6108 -3.5279 2.0976 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260612377.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:43 Heat of formation + Delta-G solvation = 49.596140 kcal Electronic energy + Delta-G solvation = -14026.522113 eV Core-core repulsion = 11694.068132 eV Total energy + Delta-G solvation = -2332.453981 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.81915 -36.95525 -34.79975 -31.99383 -31.33890 -29.29093 -26.16031 -24.17091 -23.19303 -22.12371 -21.24134 -19.82098 -16.68976 -16.47263 -16.02837 -14.95195 -14.77958 -14.23787 -14.08388 -13.29627 -13.17929 -12.72584 -12.41017 -11.86230 -11.56846 -11.29975 -11.27955 -10.93836 -10.73737 -10.50445 -10.37252 -10.09184 -9.92570 -9.12185 -8.84131 -8.58442 -8.02246 -7.27463 -6.16345 -4.33831 1.80311 1.98442 3.18787 3.26306 3.30484 3.82988 4.25806 4.43384 4.60669 4.94014 5.04789 5.06488 5.31963 5.38682 5.60353 5.70858 5.73719 5.83472 5.87363 6.12093 6.19203 6.29654 6.43252 6.57160 6.81220 6.91653 7.40102 7.58748 7.67081 7.99699 8.56347 8.66199 8.84330 9.03593 9.38632 10.81239 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.052563 B = 0.006576 C = 0.006366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.564169 B = 4256.968564 C = 4397.347347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.068 3.932 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.056 0.944 9 C 0.244 3.756 10 H 0.049 0.951 11 N -0.850 5.850 12 C -0.073 4.073 13 C -0.085 4.085 14 C -0.171 4.171 15 C 0.120 3.880 16 C -0.094 4.094 17 C -0.178 4.178 18 C -0.167 4.167 19 N -0.484 5.484 20 C 0.106 3.894 21 H 0.267 0.733 22 H 0.312 0.688 23 H 0.357 0.643 24 H 0.128 0.872 25 H 0.124 0.876 26 H 0.114 0.886 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.270 -10.281 -1.389 12.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.135 4.135 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.587 4.587 8 H 0.074 0.926 9 C 0.133 3.867 10 H 0.067 0.933 11 N -0.380 5.380 12 C -0.075 4.075 13 C -0.111 4.111 14 C -0.190 4.190 15 C -0.018 4.018 16 C -0.113 4.113 17 C -0.215 4.215 18 C -0.204 4.204 19 N -0.193 5.193 20 C -0.051 4.051 21 H 0.077 0.923 22 H 0.122 0.878 23 H 0.174 0.826 24 H 0.146 0.854 25 H 0.142 0.858 26 H 0.132 0.868 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.267 -11.117 -0.875 12.792 hybrid contribution 0.443 2.321 -0.698 2.464 sum 6.710 -8.796 -1.573 11.175 Atomic orbital electron populations 1.69738 1.05865 1.27383 1.50096 1.25014 0.94955 0.99366 0.94153 0.86486 0.79858 0.82766 0.78312 1.20478 1.21022 1.19813 1.21794 0.93638 0.90903 1.52328 0.92600 1.17946 0.88838 0.87860 0.92051 0.93346 1.59542 1.18417 1.56200 1.03849 1.21462 0.96898 0.96112 0.93028 1.21447 0.96636 0.94272 0.98752 1.21753 0.99429 0.99396 0.98468 1.20036 0.96675 0.95886 0.89202 1.20655 0.99015 0.88564 1.03055 1.23058 1.02792 1.03349 0.92304 1.22935 1.01117 0.96539 0.99834 1.67283 1.14398 1.07310 1.30265 1.22442 0.91905 0.92454 0.98328 0.92330 0.87844 0.82609 0.85411 0.85831 0.86801 0.88389 0.88498 0.88630 0.88808 0.83177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.08 11.54 55.43 0.64 -23.44 16 2 C 0.07 1.80 5.38 -17.82 -0.10 1.70 16 3 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.55 -14.47 8.71 -34.44 -0.30 -14.77 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.24 5.96 2.97 -70.02 -0.21 5.75 16 10 H 0.05 1.29 8.03 -51.93 -0.42 0.87 16 11 N -0.85 -19.91 9.02 -6.65 -0.06 -19.97 16 12 C -0.07 -1.58 4.90 -104.49 -0.51 -2.09 16 13 C -0.08 -1.64 9.82 -39.28 -0.39 -2.03 16 14 C -0.17 -2.91 9.36 -39.44 -0.37 -3.28 16 15 C 0.12 2.11 6.46 -82.59 -0.53 1.58 16 16 C -0.09 -1.30 6.22 -91.78 -0.57 -1.88 16 17 C -0.18 -1.93 9.80 -26.70 -0.26 -2.19 16 18 C -0.17 -1.95 10.24 -26.69 -0.27 -2.22 16 19 N -0.48 -9.65 10.27 -9.47 -0.10 -9.75 16 20 C 0.11 2.22 10.47 -17.55 -0.18 2.04 16 21 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 22 H 0.31 6.92 7.36 -39.29 -0.29 6.63 16 23 H 0.36 8.93 7.08 -39.29 -0.28 8.66 16 24 H 0.13 2.28 8.06 -52.48 -0.42 1.86 16 25 H 0.12 1.71 6.25 -52.49 -0.33 1.38 16 26 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.10 1.04 6.39 -51.93 -0.33 0.71 16 28 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.15 3.03 6.67 -52.49 -0.35 2.68 16 LS Contribution 264.47 15.07 3.99 3.99 Total: -1.00 -27.78 264.47 -7.90 -35.67 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -3.65 Total: 15.21 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -3.69 Total: -17.39 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.48 Total: -53.16 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.78 -7.90 -35.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260612377.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.270 kcal (2) G-P(sol) polarization free energy of solvation -27.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds