Wall clock time and date at job start Mon Mar 30 2020 02:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99999 * 2 1 4 4 H 1.48499 * 109.46776 * 269.99938 * 3 2 1 5 5 H 1.48498 * 109.47122 * 30.00005 * 3 2 1 6 6 H 1.48498 * 109.47179 * 150.00332 * 3 2 1 7 7 C 1.37881 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00352 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47052 * 59.99143 * 9 7 2 11 11 N 1.46909 * 109.46811 * 299.99790 * 9 7 2 12 12 C 1.50691 * 109.47520 * 180.02562 * 9 7 2 13 13 C 1.38672 * 120.41848 * 259.97906 * 12 9 7 14 14 C 1.38628 * 118.42475 * 180.02562 * 13 12 9 15 15 C 1.38223 * 119.16031 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.61920 * 180.02562 * 15 14 13 17 17 C 1.52990 * 117.50002 * 343.72836 * 16 15 14 18 18 C 1.52999 * 117.49984 * 275.06545 * 16 15 14 19 19 N 1.31856 * 120.76457 * 0.02562 * 15 14 13 20 20 C 1.31884 * 121.72497 * 359.97438 * 19 15 14 21 21 H 0.97001 * 119.99988 * 359.97438 * 1 2 3 22 22 H 1.00903 * 110.99803 * 300.00127 * 11 9 7 23 23 H 1.00904 * 110.99919 * 63.95446 * 11 9 7 24 24 H 1.08006 * 120.78702 * 359.97438 * 13 12 9 25 25 H 1.07996 * 120.42146 * 179.97438 * 14 13 12 26 26 H 1.09003 * 115.54546 * 129.39740 * 16 15 14 27 27 H 1.09004 * 117.49644 * 359.97438 * 17 16 15 28 28 H 1.09002 * 117.50438 * 145.01833 * 17 16 15 29 29 H 1.08995 * 117.49973 * 214.97790 * 18 16 15 30 30 H 1.08992 * 117.49778 * 359.97438 * 18 16 15 31 31 H 1.08001 * 119.62224 * 179.72558 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8896 11 7 0.4061 -2.5768 1.1998 12 6 2.2303 -3.6446 0.0018 13 6 2.5293 -4.3140 -1.1753 14 6 3.4355 -5.3620 -1.1265 15 6 4.0073 -5.7020 0.0851 16 6 4.9942 -6.8392 0.1499 17 6 5.0372 -7.8056 -1.0354 18 6 4.4324 -8.2546 0.2972 19 7 3.6994 -5.0431 1.1849 20 6 2.8417 -4.0412 1.1759 21 1 -0.4850 0.8401 0.0004 22 1 0.9638 -2.5251 2.0390 23 1 -0.3013 -1.8573 1.1908 24 1 2.0665 -4.0263 -2.1077 25 1 3.6915 -5.9057 -2.0238 26 1 5.9356 -6.6165 0.6522 27 1 4.3514 -7.6192 -1.8619 28 1 6.0068 -8.2192 -1.3127 29 1 5.0044 -8.9633 0.8960 30 1 3.3491 -8.3633 0.3477 31 1 2.6108 -3.5279 2.0976 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260612377.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:43 Heat of formation + Delta-G solvation = 32.112826 kcal Electronic energy + Delta-G solvation = -14027.280246 eV Core-core repulsion = 11694.068132 eV Total energy + Delta-G solvation = -2333.212114 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.26828 -38.13089 -36.55207 -33.79186 -32.97248 -30.88098 -28.09588 -25.73935 -24.59771 -23.18868 -22.66340 -21.29048 -18.65555 -17.87470 -17.47272 -16.77081 -15.94590 -15.82906 -15.60635 -14.98250 -14.66958 -14.36690 -13.98290 -13.44790 -13.24448 -12.86267 -12.82899 -12.46888 -12.27126 -12.04082 -11.78069 -11.46458 -11.28974 -10.81324 -10.59528 -10.19800 -9.56148 -9.21431 -8.16422 -6.42742 0.31940 0.46218 1.35587 1.38199 1.47791 2.33795 2.78029 3.00864 3.06145 3.38764 3.89935 4.00001 4.10720 4.11407 4.26726 4.35441 4.37460 4.67032 4.74685 4.83294 4.92009 5.03613 5.15418 5.21829 5.30542 5.36203 5.59229 5.74249 5.87406 6.03796 6.57363 6.85623 7.05212 7.16108 7.34156 8.78200 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.052563 B = 0.006576 C = 0.006366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.564169 B = 4256.968564 C = 4397.347347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.027 3.973 3 Si 0.959 3.041 4 H -0.275 1.275 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.562 4.562 8 H 0.043 0.957 9 C 0.250 3.750 10 H 0.019 0.981 11 N -0.843 5.843 12 C -0.101 4.101 13 C -0.092 4.092 14 C -0.162 4.162 15 C 0.121 3.879 16 C -0.123 4.123 17 C -0.153 4.153 18 C -0.162 4.162 19 N -0.500 5.500 20 C 0.095 3.905 21 H 0.269 0.731 22 H 0.318 0.682 23 H 0.348 0.652 24 H 0.137 0.863 25 H 0.162 0.838 26 H 0.119 0.881 27 H 0.103 0.897 28 H 0.124 0.876 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.804 -11.550 -2.167 14.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.174 4.174 3 Si 0.784 3.216 4 H -0.201 1.201 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.601 4.601 8 H 0.062 0.938 9 C 0.139 3.861 10 H 0.037 0.963 11 N -0.372 5.372 12 C -0.104 4.104 13 C -0.118 4.118 14 C -0.181 4.181 15 C -0.018 4.018 16 C -0.142 4.142 17 C -0.190 4.190 18 C -0.199 4.199 19 N -0.209 5.209 20 C -0.062 4.062 21 H 0.079 0.921 22 H 0.129 0.871 23 H 0.163 0.837 24 H 0.155 0.845 25 H 0.180 0.820 26 H 0.137 0.863 27 H 0.122 0.878 28 H 0.142 0.858 29 H 0.135 0.865 30 H 0.101 0.899 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.801 -12.394 -1.647 14.736 hybrid contribution -0.001 2.601 -0.474 2.644 sum 7.800 -9.792 -2.121 12.697 Atomic orbital electron populations 1.69825 1.06851 1.28178 1.50315 1.25702 0.95743 1.02220 0.93772 0.85546 0.78533 0.79178 0.78297 1.20089 1.20318 1.19973 1.21967 0.93143 0.92308 1.52714 0.93832 1.17725 0.88771 0.88612 0.91002 0.96322 1.59504 1.18183 1.55477 1.04027 1.21266 0.97877 0.96669 0.94583 1.21680 0.97118 0.94741 0.98300 1.22111 0.97877 0.98330 0.99796 1.20778 0.96312 0.95954 0.88712 1.20741 0.98502 0.88313 1.06640 1.23215 1.04058 1.00309 0.91439 1.23022 1.00868 0.94990 1.01056 1.67350 1.14484 1.07420 1.31633 1.22368 0.92625 0.93218 0.97962 0.92113 0.87147 0.83736 0.84486 0.82013 0.86343 0.87838 0.85815 0.86526 0.89896 0.83647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.87 11.54 21.45 0.25 -49.63 16 2 C 0.03 1.41 5.38 84.66 0.46 1.87 16 3 Si 0.96 42.64 29.54 68.60 2.03 44.66 16 4 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 7 C -0.56 -30.37 8.71 25.60 0.22 -30.15 16 8 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 9 C 0.25 12.60 2.97 43.42 0.13 12.73 16 10 H 0.02 1.04 8.03 -2.39 -0.02 1.02 16 11 N -0.84 -40.69 9.02 -174.95 -1.58 -42.27 16 12 C -0.10 -4.50 4.90 -19.78 -0.10 -4.60 16 13 C -0.09 -3.52 9.82 22.47 0.22 -3.30 16 14 C -0.16 -5.18 9.36 22.36 0.21 -4.97 16 15 C 0.12 4.05 6.46 42.55 0.27 4.33 16 16 C -0.12 -3.07 6.22 -11.54 -0.07 -3.14 16 17 C -0.15 -2.66 9.80 30.62 0.30 -2.36 16 18 C -0.16 -3.26 10.24 30.62 0.31 -2.94 16 19 N -0.50 -19.77 10.27 -183.88 -1.89 -21.66 16 20 C 0.09 4.04 10.47 84.67 0.89 4.92 16 21 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 22 H 0.32 14.56 7.36 -89.69 -0.66 13.90 16 23 H 0.35 17.89 7.08 -89.69 -0.63 17.25 16 24 H 0.14 4.85 8.06 -2.91 -0.02 4.83 16 25 H 0.16 3.85 6.25 -2.91 -0.02 3.83 16 26 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 27 H 0.10 1.70 6.39 -2.39 -0.02 1.69 16 28 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.15 6.10 6.67 -2.91 -0.02 6.08 16 Total: -1.00 -59.86 264.47 1.51 -58.35 By element: Atomic # 1 Polarization: 38.30 SS G_CDS: -0.14 Total: 38.16 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 2.84 Total: -27.61 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -3.22 Total: -113.56 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -59.86 1.51 -58.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260612377.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.462 kcal (2) G-P(sol) polarization free energy of solvation -59.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds