Wall clock time and date at job start Mon Mar 30 2020 02:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00307 * 2 1 4 4 H 1.48503 * 109.47008 * 240.00263 * 3 2 1 5 5 H 1.48496 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47134 * 119.99966 * 3 2 1 7 7 C 1.37880 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99815 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47066 * 300.00000 * 9 7 2 11 11 N 1.46893 * 109.47621 * 59.99802 * 9 7 2 12 12 C 1.50706 * 109.47178 * 180.02562 * 9 7 2 13 13 C 1.38672 * 120.41882 * 99.99599 * 12 9 7 14 14 C 1.38628 * 118.41768 * 180.02562 * 13 12 9 15 15 C 1.38228 * 119.16339 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.62190 * 179.97438 * 15 14 13 17 17 C 1.52999 * 117.49608 * 343.75692 * 16 15 14 18 18 C 1.52999 * 117.50039 * 275.09511 * 16 15 14 19 19 N 1.31864 * 120.76126 * 0.02562 * 15 14 13 20 20 C 1.31876 * 121.72419 * 359.69801 * 19 15 14 21 21 H 0.97001 * 119.99839 * 359.97438 * 1 2 3 22 22 H 1.00899 * 110.99958 * 59.99981 * 11 9 7 23 23 H 1.00900 * 111.00360 * 183.95344 * 11 9 7 24 24 H 1.07991 * 120.79216 * 0.02562 * 13 12 9 25 25 H 1.07997 * 120.42154 * 179.97438 * 14 13 12 26 26 H 1.09004 * 115.54868 * 129.41694 * 16 15 14 27 27 H 1.09000 * 117.49975 * 359.97438 * 17 16 15 28 28 H 1.09000 * 117.50297 * 145.02118 * 17 16 15 29 29 H 1.08995 * 117.49314 * 214.97399 * 18 16 15 30 30 H 1.08993 * 117.50016 * 359.97389 * 18 16 15 31 31 H 1.07997 * 119.61834 * 180.31026 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 1 0.6239 -2.5574 0.8880 11 7 0.4068 -2.5762 -1.2014 12 6 2.2302 -3.6447 -0.0015 13 6 2.5277 -4.3138 1.1762 14 6 3.4348 -5.3610 1.1288 15 6 4.0080 -5.7014 -0.0821 16 6 4.9958 -6.8378 -0.1453 17 6 5.6068 -7.3168 1.1731 18 6 6.4574 -6.5223 0.1789 19 7 3.7013 -5.0426 -1.1824 20 6 2.8389 -4.0450 -1.1757 21 1 -0.4850 0.8401 0.0004 22 1 0.9651 -2.5242 -2.0403 23 1 -0.1572 -3.4128 -1.1936 24 1 2.0639 -4.0259 2.1079 25 1 3.6904 -5.9041 2.0266 26 1 4.8008 -7.5881 -0.9116 27 1 5.2946 -6.8098 2.0861 28 1 5.8143 -8.3821 1.2740 29 1 7.2239 -7.0652 -0.3739 30 1 6.7046 -5.4927 0.4375 31 1 2.6088 -3.5321 -2.0978 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260612423.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:44 Heat of formation + Delta-G solvation = 57.826906 kcal Electronic energy + Delta-G solvation = -14036.334211 eV Core-core repulsion = 11704.237143 eV Total energy + Delta-G solvation = -2332.097068 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.92465 -37.02885 -34.68332 -31.94812 -31.48000 -29.32126 -26.18589 -24.11371 -23.26978 -22.17564 -21.24408 -19.90586 -16.64365 -16.51489 -15.92778 -14.95398 -14.77009 -14.27438 -14.04928 -13.77475 -13.24979 -12.64312 -12.36341 -12.04548 -11.61446 -11.38114 -11.19973 -10.83792 -10.75467 -10.53757 -10.40821 -10.00595 -9.46421 -9.09325 -8.86093 -8.46835 -8.05853 -7.14440 -5.92850 -4.08785 1.67915 1.88153 3.32875 3.37668 3.40566 3.76913 4.28147 4.46038 4.54357 4.88597 4.99364 5.23397 5.28873 5.32390 5.54752 5.63393 5.67851 5.79153 5.81303 6.07153 6.12510 6.17906 6.23332 6.39392 6.70839 6.86134 7.31205 7.40479 7.84618 8.10509 8.52676 8.56744 8.93012 9.07684 9.60462 11.11315 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.043569 B = 0.006927 C = 0.006531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.501777 B = 4041.391531 C = 4286.300744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.086 3.914 3 Si 0.886 3.114 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.535 4.535 8 H 0.052 0.948 9 C 0.258 3.742 10 H 0.048 0.952 11 N -0.809 5.809 12 C -0.122 4.122 13 C -0.081 4.081 14 C -0.170 4.170 15 C 0.121 3.879 16 C -0.096 4.096 17 C -0.177 4.177 18 C -0.166 4.166 19 N -0.482 5.482 20 C 0.094 3.906 21 H 0.257 0.743 22 H 0.318 0.682 23 H 0.299 0.701 24 H 0.129 0.871 25 H 0.124 0.876 26 H 0.114 0.886 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.205 -11.401 1.755 13.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.122 4.122 3 Si 0.713 3.287 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.573 4.573 8 H 0.070 0.930 9 C 0.148 3.852 10 H 0.066 0.934 11 N -0.334 5.334 12 C -0.126 4.126 13 C -0.107 4.107 14 C -0.190 4.190 15 C -0.017 4.017 16 C -0.114 4.114 17 C -0.214 4.214 18 C -0.204 4.204 19 N -0.190 5.190 20 C -0.063 4.063 21 H 0.067 0.933 22 H 0.131 0.869 23 H 0.109 0.891 24 H 0.147 0.853 25 H 0.142 0.858 26 H 0.132 0.868 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.051 -10.826 1.222 12.977 hybrid contribution 0.657 0.372 0.586 0.956 sum 7.708 -10.454 1.808 13.114 Atomic orbital electron populations 1.70086 1.05679 1.25978 1.46209 1.24934 0.94660 0.98559 0.94022 0.86791 0.79741 0.83516 0.78611 1.20251 1.21226 1.20376 1.20758 0.92137 0.89360 1.55062 0.92958 1.18165 0.87306 0.88514 0.91213 0.93373 1.59190 1.27961 1.42048 1.04246 1.22788 0.98920 0.97755 0.93132 1.21522 0.96370 0.94004 0.98851 1.21823 0.99360 0.99299 0.98509 1.20068 0.96727 0.95656 0.89211 1.20660 0.93113 0.97910 0.99758 1.23064 1.04177 1.00353 0.93847 1.22945 0.93099 1.01421 1.02925 1.67272 1.13932 1.07391 1.30448 1.22484 0.92493 0.92916 0.98439 0.93262 0.86892 0.89060 0.85270 0.85775 0.86776 0.88374 0.88435 0.88554 0.88769 0.83261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.18 12.77 55.43 0.71 -23.47 16 2 C 0.09 2.35 5.39 -17.82 -0.10 2.25 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.53 -14.44 8.71 -34.44 -0.30 -14.74 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.26 6.23 2.87 -70.02 -0.20 6.02 16 10 H 0.05 1.26 8.03 -51.93 -0.42 0.85 16 11 N -0.81 -18.48 8.37 -6.65 -0.06 -18.54 16 12 C -0.12 -2.54 4.90 -104.48 -0.51 -3.05 16 13 C -0.08 -1.51 9.82 -39.28 -0.39 -1.90 16 14 C -0.17 -2.81 9.36 -39.44 -0.37 -3.18 16 15 C 0.12 2.07 6.46 -82.58 -0.53 1.54 16 16 C -0.10 -1.29 6.22 -91.77 -0.57 -1.86 16 17 C -0.18 -1.88 9.80 -26.69 -0.26 -2.14 16 18 C -0.17 -1.95 10.24 -26.69 -0.27 -2.22 16 19 N -0.48 -9.31 10.27 -9.47 -0.10 -9.41 16 20 C 0.09 1.89 10.47 -17.55 -0.18 1.71 16 21 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 22 H 0.32 6.92 7.36 -39.29 -0.29 6.63 16 23 H 0.30 6.12 9.06 -39.29 -0.36 5.77 16 24 H 0.13 2.24 8.06 -52.49 -0.42 1.81 16 25 H 0.12 1.67 6.25 -52.49 -0.33 1.34 16 26 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 27 H 0.10 1.02 6.39 -51.93 -0.33 0.69 16 28 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.15 2.89 6.67 -52.49 -0.35 2.54 16 LS Contribution 266.93 15.07 4.02 4.02 Total: -1.00 -29.60 266.93 -7.86 -37.46 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -3.73 Total: 11.36 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -3.69 Total: -17.56 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: 0.55 Total: -51.42 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.60 -7.86 -37.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260612423.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.282 kcal (2) G-P(sol) polarization free energy of solvation -29.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds