Wall clock time and date at job start Mon Mar 30 2020 02:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00307 * 2 1 4 4 H 1.48503 * 109.47008 * 240.00263 * 3 2 1 5 5 H 1.48496 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47134 * 119.99966 * 3 2 1 7 7 C 1.37880 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99815 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47066 * 300.00000 * 9 7 2 11 11 N 1.46893 * 109.47621 * 59.99802 * 9 7 2 12 12 C 1.50706 * 109.47178 * 180.02562 * 9 7 2 13 13 C 1.38672 * 120.41882 * 99.99599 * 12 9 7 14 14 C 1.38628 * 118.41768 * 180.02562 * 13 12 9 15 15 C 1.38228 * 119.16339 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.62190 * 179.97438 * 15 14 13 17 17 C 1.52999 * 117.49608 * 343.75692 * 16 15 14 18 18 C 1.52999 * 117.50039 * 275.09511 * 16 15 14 19 19 N 1.31864 * 120.76126 * 0.02562 * 15 14 13 20 20 C 1.31876 * 121.72419 * 359.69801 * 19 15 14 21 21 H 0.97001 * 119.99839 * 359.97438 * 1 2 3 22 22 H 1.00899 * 110.99958 * 59.99981 * 11 9 7 23 23 H 1.00900 * 111.00360 * 183.95344 * 11 9 7 24 24 H 1.07991 * 120.79216 * 0.02562 * 13 12 9 25 25 H 1.07997 * 120.42154 * 179.97438 * 14 13 12 26 26 H 1.09004 * 115.54868 * 129.41694 * 16 15 14 27 27 H 1.09000 * 117.49975 * 359.97438 * 17 16 15 28 28 H 1.09000 * 117.50297 * 145.02118 * 17 16 15 29 29 H 1.08995 * 117.49314 * 214.97399 * 18 16 15 30 30 H 1.08993 * 117.50016 * 359.97389 * 18 16 15 31 31 H 1.07997 * 119.61834 * 180.31026 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 1 0.6239 -2.5574 0.8880 11 7 0.4068 -2.5762 -1.2014 12 6 2.2302 -3.6447 -0.0015 13 6 2.5277 -4.3138 1.1762 14 6 3.4348 -5.3610 1.1288 15 6 4.0080 -5.7014 -0.0821 16 6 4.9958 -6.8378 -0.1453 17 6 5.6068 -7.3168 1.1731 18 6 6.4574 -6.5223 0.1789 19 7 3.7013 -5.0426 -1.1824 20 6 2.8389 -4.0450 -1.1757 21 1 -0.4850 0.8401 0.0004 22 1 0.9651 -2.5242 -2.0403 23 1 -0.1572 -3.4128 -1.1936 24 1 2.0639 -4.0259 2.1079 25 1 3.6904 -5.9041 2.0266 26 1 4.8008 -7.5881 -0.9116 27 1 5.2946 -6.8098 2.0861 28 1 5.8143 -8.3821 1.2740 29 1 7.2239 -7.0652 -0.3739 30 1 6.7046 -5.4927 0.4375 31 1 2.6088 -3.5321 -2.0978 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260612423.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:44 Heat of formation + Delta-G solvation = 38.526449 kcal Electronic energy + Delta-G solvation = -14037.171141 eV Core-core repulsion = 11704.237143 eV Total energy + Delta-G solvation = -2332.933998 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.33500 -38.17040 -36.39371 -33.81309 -33.07453 -30.84748 -28.13463 -25.66095 -24.63626 -23.21459 -22.68042 -21.34608 -18.57507 -17.81166 -17.39725 -16.74924 -15.97821 -15.87824 -15.73807 -15.20544 -14.70319 -14.23972 -14.04559 -13.49416 -13.33122 -12.78081 -12.72098 -12.49872 -12.25916 -11.93863 -11.68832 -11.34157 -11.26070 -10.64041 -10.56719 -10.31651 -9.59015 -8.92998 -8.01587 -6.23737 0.24057 0.40824 1.42460 1.43528 1.50870 2.43886 2.73537 2.97768 3.22403 3.35613 3.85236 3.97783 4.06127 4.11734 4.26941 4.29785 4.30847 4.47172 4.66349 4.78970 4.89015 5.00915 5.10942 5.23411 5.27329 5.31463 5.61046 5.71101 5.85086 6.11467 6.59570 7.04322 7.09206 7.20987 7.48995 9.01558 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.043569 B = 0.006927 C = 0.006531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.501777 B = 4041.391531 C = 4286.300744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.040 3.960 3 Si 0.946 3.054 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.041 0.959 9 C 0.266 3.734 10 H 0.019 0.981 11 N -0.818 5.818 12 C -0.144 4.144 13 C -0.088 4.088 14 C -0.162 4.162 15 C 0.122 3.878 16 C -0.122 4.122 17 C -0.152 4.152 18 C -0.166 4.166 19 N -0.499 5.499 20 C 0.086 3.914 21 H 0.257 0.743 22 H 0.324 0.676 23 H 0.312 0.688 24 H 0.138 0.862 25 H 0.162 0.838 26 H 0.122 0.878 27 H 0.102 0.898 28 H 0.126 0.874 29 H 0.117 0.883 30 H 0.079 0.921 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.864 -12.780 2.480 15.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.165 4.165 3 Si 0.772 3.228 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.585 4.585 8 H 0.059 0.941 9 C 0.155 3.845 10 H 0.037 0.963 11 N -0.345 5.345 12 C -0.149 4.149 13 C -0.114 4.114 14 C -0.181 4.181 15 C -0.016 4.016 16 C -0.140 4.140 17 C -0.189 4.189 18 C -0.203 4.203 19 N -0.207 5.207 20 C -0.071 4.071 21 H 0.066 0.934 22 H 0.137 0.863 23 H 0.123 0.877 24 H 0.156 0.844 25 H 0.179 0.821 26 H 0.139 0.861 27 H 0.121 0.879 28 H 0.144 0.856 29 H 0.135 0.865 30 H 0.098 0.902 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 8.716 -12.209 1.944 15.126 hybrid contribution 0.203 0.681 0.382 0.807 sum 8.920 -11.527 2.327 14.760 Atomic orbital electron populations 1.70199 1.06926 1.26622 1.47404 1.25627 0.95420 1.01626 0.93802 0.85833 0.78559 0.79825 0.78577 1.20071 1.20722 1.19907 1.21032 0.91820 0.91070 1.54620 0.94053 1.17792 0.87408 0.88925 0.90356 0.96318 1.59006 1.28330 1.43070 1.04131 1.22422 0.99808 0.98046 0.94603 1.21735 0.96821 0.94475 0.98412 1.22163 0.97830 0.98313 0.99813 1.20789 0.96417 0.95670 0.88758 1.20757 0.93376 0.97323 1.02580 1.23218 1.01368 1.01878 0.92429 1.23023 0.92400 1.01310 1.03592 1.67343 1.14052 1.07545 1.31798 1.22415 0.93024 0.93531 0.98084 0.93363 0.86339 0.87661 0.84427 0.82093 0.86052 0.87931 0.85633 0.86478 0.90243 0.83611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.90 12.77 21.45 0.27 -50.62 16 2 C 0.04 2.20 5.39 84.66 0.46 2.65 16 3 Si 0.95 43.79 29.54 68.60 2.03 45.82 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.55 -30.11 8.71 25.60 0.22 -29.89 16 8 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 9 C 0.27 13.16 2.87 43.43 0.12 13.29 16 10 H 0.02 1.03 8.03 -2.39 -0.02 1.01 16 11 N -0.82 -38.34 8.37 -174.96 -1.46 -39.80 16 12 C -0.14 -6.12 4.90 -19.77 -0.10 -6.22 16 13 C -0.09 -3.23 9.82 22.47 0.22 -3.01 16 14 C -0.16 -4.99 9.36 22.36 0.21 -4.78 16 15 C 0.12 3.95 6.46 42.55 0.27 4.23 16 16 C -0.12 -2.92 6.22 -11.54 -0.07 -3.00 16 17 C -0.15 -2.57 9.80 30.62 0.30 -2.27 16 18 C -0.17 -3.36 10.24 30.62 0.31 -3.04 16 19 N -0.50 -18.99 10.27 -183.88 -1.89 -20.88 16 20 C 0.09 3.49 10.47 84.67 0.89 4.38 16 21 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 22 H 0.32 14.44 7.36 -89.69 -0.66 13.78 16 23 H 0.31 13.08 9.06 -89.69 -0.81 12.27 16 24 H 0.14 4.71 8.06 -2.91 -0.02 4.68 16 25 H 0.16 3.70 6.25 -2.91 -0.02 3.68 16 26 H 0.12 2.75 8.14 -2.38 -0.02 2.73 16 27 H 0.10 1.66 6.39 -2.39 -0.02 1.65 16 28 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.15 5.82 6.67 -2.91 -0.02 5.81 16 Total: -1.00 -63.59 266.93 1.47 -62.12 By element: Atomic # 1 Polarization: 31.34 SS G_CDS: -0.32 Total: 31.03 kcal Atomic # 6 Polarization: -30.50 SS G_CDS: 2.84 Total: -27.66 kcal Atomic # 7 Polarization: -108.23 SS G_CDS: -3.08 Total: -111.30 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -63.59 1.47 -62.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260612423.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.645 kcal (2) G-P(sol) polarization free energy of solvation -63.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds