Wall clock time and date at job start Mon Mar 30 2020 03:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31403 * 118.97534 * 2 1 4 4 C 1.34038 * 120.57502 * 180.29088 * 3 2 1 5 5 C 1.41551 * 120.66184 * 179.76245 * 4 3 2 6 6 H 1.08001 * 120.00184 * 179.72211 * 5 4 3 7 7 C 1.40108 * 119.99910 * 359.43995 * 5 4 3 8 8 N 1.30668 * 120.00155 * 0.28212 * 7 5 4 9 9 Si 1.86800 * 120.00062 * 180.27493 * 7 5 4 10 10 H 1.48503 * 109.47348 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47233 * 120.00311 * 9 7 5 12 12 H 1.48500 * 109.47237 * 240.00334 * 9 7 5 13 13 C 1.40941 * 118.67778 * 359.48575 * 4 3 2 14 14 C 1.38283 * 118.15504 * 0.25419 * 13 4 3 15 15 C 1.50694 * 120.37474 * 179.97438 * 14 13 4 16 16 C 1.53787 * 113.61307 * 61.74362 * 15 14 13 17 17 C 1.53958 * 87.01970 * 220.04948 * 16 15 14 18 18 C 1.53774 * 113.61558 * 324.13654 * 15 14 13 19 19 N 1.32016 * 118.97769 * 179.76696 * 2 1 3 20 20 H 1.09007 * 109.46849 * 270.23080 * 1 2 3 21 21 H 1.08994 * 109.47616 * 30.23333 * 1 2 3 22 22 H 1.09001 * 109.46973 * 150.23666 * 1 2 3 23 23 H 0.97005 * 120.00428 * 180.02562 * 8 7 5 24 24 H 1.07997 * 120.92065 * 180.27543 * 13 4 3 25 25 H 1.09003 * 112.85357 * 192.93774 * 15 14 13 26 26 H 1.08994 * 113.61239 * 334.56318 * 16 15 14 27 27 H 1.08992 * 113.61303 * 105.47086 * 16 15 14 28 28 H 1.09000 * 113.53424 * 270.81530 * 17 16 15 29 29 H 1.08999 * 113.74953 * 139.94355 * 17 16 15 30 30 H 1.09003 * 113.61886 * 254.53089 * 18 15 14 31 31 H 1.09002 * 113.61736 * 25.42924 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1436 1.1496 0.0000 4 6 3.4834 1.1870 -0.0059 5 6 4.1710 2.4243 -0.0109 6 1 5.2508 2.4420 -0.0111 7 6 3.4506 3.6259 -0.0217 8 7 2.1441 3.6046 -0.0215 9 14 4.3580 5.2587 -0.0361 10 1 5.8223 5.0114 -0.0344 11 1 3.9866 6.0207 -1.2554 12 1 3.9865 6.0422 1.1694 13 6 4.1941 -0.0302 -0.0009 14 6 3.4702 -1.2084 0.0044 15 6 4.1790 -2.5382 0.0092 16 6 5.0584 -2.7630 1.2507 17 6 6.0913 -3.4016 0.3043 18 6 5.4758 -2.5480 -0.8171 19 7 2.1466 -1.1549 0.0047 20 1 -0.3633 0.0041 1.0277 21 1 -0.3634 0.8878 -0.5174 22 1 -0.3633 -0.8921 -0.5102 23 1 1.6454 4.4365 -0.0293 24 1 5.2740 -0.0422 -0.0009 25 1 3.5141 -3.3731 -0.2118 26 1 5.4037 -1.8389 1.7142 27 1 4.6304 -3.4633 1.9679 28 1 5.9497 -4.4733 0.1649 29 1 7.1227 -3.1377 0.5379 30 1 5.3844 -3.0750 -1.7669 31 1 5.9355 -1.5651 -0.9200 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260617418.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:31 Heat of formation + Delta-G solvation = 46.544877 kcal Electronic energy + Delta-G solvation = -14302.819307 eV Core-core repulsion = 11970.233014 eV Total energy + Delta-G solvation = -2332.586293 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.41583 -37.71435 -34.04576 -31.65089 -31.26190 -27.32680 -26.57648 -25.28171 -25.01076 -21.17845 -21.01255 -18.69007 -17.40534 -16.17773 -15.05038 -14.71639 -14.62266 -13.61537 -13.55611 -13.30077 -12.33581 -12.14455 -12.01830 -11.94051 -11.51555 -11.50499 -11.14060 -11.11193 -10.72363 -10.28587 -10.14326 -10.11035 -10.01085 -9.59923 -8.88343 -8.43900 -7.79839 -7.39074 -6.44734 -4.74657 2.68473 2.84085 3.04258 3.08638 3.21981 3.87601 4.69197 4.99922 5.06253 5.09840 5.39137 5.55688 5.79973 5.85856 5.96862 6.05178 6.17394 6.17878 6.25810 6.30856 6.52003 6.55001 6.65766 6.70922 6.79929 6.95741 7.05640 7.23438 7.33697 7.91872 8.06421 8.53524 8.79944 9.14308 10.14773 10.27658 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.029486 B = 0.009246 C = 0.007294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.370721 B = 3027.717969 C = 3838.076698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.304 3.696 3 N -0.516 5.516 4 C 0.272 3.728 5 C -0.424 4.424 6 H 0.086 0.914 7 C 0.069 3.931 8 N -0.709 5.709 9 Si 0.909 3.091 10 H -0.259 1.259 11 H -0.272 1.272 12 H -0.272 1.272 13 C -0.320 4.320 14 C 0.172 3.828 15 C -0.054 4.054 16 C -0.127 4.127 17 C -0.142 4.142 18 C -0.132 4.132 19 N -0.621 5.621 20 H 0.062 0.938 21 H 0.071 0.929 22 H 0.061 0.939 23 H 0.274 0.726 24 H 0.105 0.895 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.556 -5.068 0.227 6.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.033 3.967 3 N -0.236 5.236 4 C 0.143 3.857 5 C -0.458 4.458 6 H 0.105 0.895 7 C -0.157 4.157 8 N -0.330 5.330 9 Si 0.733 3.267 10 H -0.183 1.183 11 H -0.197 1.197 12 H -0.197 1.197 13 C -0.347 4.347 14 C 0.033 3.967 15 C -0.073 4.073 16 C -0.165 4.165 17 C -0.179 4.179 18 C -0.170 4.170 19 N -0.345 5.345 20 H 0.081 0.919 21 H 0.090 0.910 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.123 0.877 25 H 0.111 0.889 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.388 -4.916 0.231 5.470 hybrid contribution 1.302 0.798 0.007 1.527 sum 3.690 -4.119 0.237 5.535 Atomic orbital electron populations 1.20233 0.89034 1.01718 1.01588 1.22817 0.96766 0.85079 0.92058 1.69195 1.08981 1.25755 1.19699 1.18780 0.88113 0.92118 0.86706 1.19669 0.94338 0.89076 1.42709 0.89547 1.26123 0.94897 1.01299 0.93408 1.70099 1.06754 1.28504 1.27656 0.86242 0.80811 0.80965 0.78674 1.18295 1.19700 1.19699 1.22115 0.99522 0.94135 1.18882 1.20583 0.89863 0.93244 0.93053 1.21275 0.94204 0.95003 0.96817 1.22957 0.96569 1.00877 0.96105 1.22843 0.98512 0.99062 0.97502 1.23026 0.96300 1.00680 0.96961 1.67737 1.09178 1.30653 1.26966 0.91934 0.90989 0.91998 0.91430 0.87657 0.88898 0.89843 0.91895 0.90630 0.91717 0.91929 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.40 10.31 36.01 0.37 -1.03 16 2 C 0.30 7.87 7.64 -157.34 -1.20 6.67 16 3 N -0.52 -14.62 7.94 -8.68 -0.07 -14.68 16 4 C 0.27 7.59 6.58 -84.62 -0.56 7.03 16 5 C -0.42 -11.34 9.20 -37.62 -0.35 -11.69 16 6 H 0.09 2.15 7.85 -52.49 -0.41 1.74 16 7 C 0.07 1.76 5.50 -17.35 -0.10 1.66 16 8 N -0.71 -18.75 11.52 55.55 0.64 -18.11 16 9 Si 0.91 18.33 29.56 -169.99 -5.02 13.30 16 10 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 11 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 12 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 13 C -0.32 -7.98 8.60 -38.54 -0.33 -8.31 16 14 C 0.17 4.06 6.22 -82.30 -0.51 3.55 16 15 C -0.05 -1.00 4.17 -90.96 -0.38 -1.38 16 16 C -0.13 -2.03 7.57 -25.82 -0.20 -2.22 16 17 C -0.14 -1.90 8.09 -25.82 -0.21 -2.11 16 18 C -0.13 -2.09 7.47 -25.92 -0.19 -2.28 16 19 N -0.62 -15.71 10.25 -7.08 -0.07 -15.78 16 20 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 21 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 22 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 23 H 0.27 6.51 8.29 -40.82 -0.34 6.17 16 24 H 0.11 2.40 6.66 -52.49 -0.35 2.05 16 25 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 26 H 0.08 1.43 7.79 -51.93 -0.40 1.02 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.09 1.49 6.28 -51.93 -0.33 1.16 16 LS Contribution 263.96 15.07 3.98 3.98 Total: -1.00 -30.07 263.96 -8.21 -38.28 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.01 Total: 3.11 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -3.65 Total: -10.10 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.50 Total: -48.57 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.30 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.07 -8.21 -38.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260617418.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.823 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds