Wall clock time and date at job start Mon Mar 30 2020 03:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31403 * 118.97534 * 2 1 4 4 C 1.34038 * 120.57502 * 180.29088 * 3 2 1 5 5 C 1.41551 * 120.66184 * 179.76245 * 4 3 2 6 6 H 1.08001 * 120.00184 * 179.72211 * 5 4 3 7 7 C 1.40108 * 119.99910 * 359.43995 * 5 4 3 8 8 N 1.30668 * 120.00155 * 0.28212 * 7 5 4 9 9 Si 1.86800 * 120.00062 * 180.27493 * 7 5 4 10 10 H 1.48503 * 109.47348 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47233 * 120.00311 * 9 7 5 12 12 H 1.48500 * 109.47237 * 240.00334 * 9 7 5 13 13 C 1.40941 * 118.67778 * 359.48575 * 4 3 2 14 14 C 1.38283 * 118.15504 * 0.25419 * 13 4 3 15 15 C 1.50694 * 120.37474 * 179.97438 * 14 13 4 16 16 C 1.53787 * 113.61307 * 61.74362 * 15 14 13 17 17 C 1.53958 * 87.01970 * 220.04948 * 16 15 14 18 18 C 1.53774 * 113.61558 * 324.13654 * 15 14 13 19 19 N 1.32016 * 118.97769 * 179.76696 * 2 1 3 20 20 H 1.09007 * 109.46849 * 270.23080 * 1 2 3 21 21 H 1.08994 * 109.47616 * 30.23333 * 1 2 3 22 22 H 1.09001 * 109.46973 * 150.23666 * 1 2 3 23 23 H 0.97005 * 120.00428 * 180.02562 * 8 7 5 24 24 H 1.07997 * 120.92065 * 180.27543 * 13 4 3 25 25 H 1.09003 * 112.85357 * 192.93774 * 15 14 13 26 26 H 1.08994 * 113.61239 * 334.56318 * 16 15 14 27 27 H 1.08992 * 113.61303 * 105.47086 * 16 15 14 28 28 H 1.09000 * 113.53424 * 270.81530 * 17 16 15 29 29 H 1.08999 * 113.74953 * 139.94355 * 17 16 15 30 30 H 1.09003 * 113.61886 * 254.53089 * 18 15 14 31 31 H 1.09002 * 113.61736 * 25.42924 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1436 1.1496 0.0000 4 6 3.4834 1.1870 -0.0059 5 6 4.1710 2.4243 -0.0109 6 1 5.2508 2.4420 -0.0111 7 6 3.4506 3.6259 -0.0217 8 7 2.1441 3.6046 -0.0215 9 14 4.3580 5.2587 -0.0361 10 1 5.8223 5.0114 -0.0344 11 1 3.9866 6.0207 -1.2554 12 1 3.9865 6.0422 1.1694 13 6 4.1941 -0.0302 -0.0009 14 6 3.4702 -1.2084 0.0044 15 6 4.1790 -2.5382 0.0092 16 6 5.0584 -2.7630 1.2507 17 6 6.0913 -3.4016 0.3043 18 6 5.4758 -2.5480 -0.8171 19 7 2.1466 -1.1549 0.0047 20 1 -0.3633 0.0041 1.0277 21 1 -0.3634 0.8878 -0.5174 22 1 -0.3633 -0.8921 -0.5102 23 1 1.6454 4.4365 -0.0293 24 1 5.2740 -0.0422 -0.0009 25 1 3.5141 -3.3731 -0.2118 26 1 5.4037 -1.8389 1.7142 27 1 4.6304 -3.4633 1.9679 28 1 5.9497 -4.4733 0.1649 29 1 7.1227 -3.1377 0.5379 30 1 5.3844 -3.0750 -1.7669 31 1 5.9355 -1.5651 -0.9200 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260617418.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:31 Heat of formation + Delta-G solvation = 29.296656 kcal Electronic energy + Delta-G solvation = -14303.567246 eV Core-core repulsion = 11970.233014 eV Total energy + Delta-G solvation = -2333.334232 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.17814 -39.21190 -35.97313 -33.45191 -33.22094 -29.16388 -28.39913 -26.74595 -26.42974 -23.01648 -22.72276 -20.16710 -19.26991 -17.90204 -16.84415 -16.35651 -15.99383 -15.48625 -15.43636 -14.89007 -14.09461 -13.64233 -13.47227 -13.33042 -13.18041 -13.17126 -12.77564 -12.68733 -12.60482 -11.90262 -11.61611 -11.58236 -11.34027 -11.21723 -10.78228 -10.38263 -9.72285 -9.36404 -8.36375 -6.77091 0.76301 1.00588 1.38554 1.53349 1.55029 2.18141 2.79520 3.53725 3.68681 3.77879 3.90755 3.94444 4.17429 4.19689 4.48044 4.73592 4.78668 4.84751 4.86658 4.92353 4.95890 4.97431 5.08111 5.12515 5.16032 5.29705 5.37902 5.44141 5.65467 6.01537 6.07627 6.58393 6.80255 7.18792 8.21885 8.35981 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.029486 B = 0.009246 C = 0.007294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.370721 B = 3027.717969 C = 3838.076698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.281 3.719 3 N -0.549 5.549 4 C 0.234 3.766 5 C -0.453 4.453 6 H 0.094 0.906 7 C 0.023 3.977 8 N -0.746 5.746 9 Si 0.994 3.006 10 H -0.252 1.252 11 H -0.264 1.264 12 H -0.264 1.264 13 C -0.336 4.336 14 C 0.168 3.832 15 C -0.067 4.067 16 C -0.126 4.126 17 C -0.117 4.117 18 C -0.131 4.131 19 N -0.632 5.632 20 H 0.076 0.924 21 H 0.069 0.931 22 H 0.083 0.917 23 H 0.283 0.717 24 H 0.118 0.882 25 H 0.099 0.901 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.743 -5.587 0.266 7.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.010 3.990 3 N -0.271 5.271 4 C 0.106 3.894 5 C -0.487 4.487 6 H 0.113 0.887 7 C -0.201 4.201 8 N -0.368 5.368 9 Si 0.813 3.187 10 H -0.175 1.175 11 H -0.189 1.189 12 H -0.189 1.189 13 C -0.362 4.362 14 C 0.029 3.971 15 C -0.086 4.086 16 C -0.164 4.164 17 C -0.154 4.154 18 C -0.169 4.169 19 N -0.356 5.356 20 H 0.095 0.905 21 H 0.088 0.912 22 H 0.101 0.899 23 H 0.094 0.906 24 H 0.136 0.864 25 H 0.117 0.883 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.120 0.880 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.577 -5.462 0.270 6.535 hybrid contribution 0.885 0.890 -0.005 1.255 sum 4.462 -4.572 0.265 6.394 Atomic orbital electron populations 1.20276 0.86096 1.02637 1.02763 1.23711 0.98877 0.84991 0.91401 1.69209 1.09512 1.27042 1.21324 1.19346 0.88785 0.93772 0.87527 1.20083 0.94999 0.89924 1.43647 0.88750 1.27129 0.95676 1.05009 0.92241 1.70183 1.08535 1.30193 1.27876 0.84995 0.79468 0.75266 0.79000 1.17475 1.18859 1.18857 1.22253 1.00207 0.93959 1.19829 1.21410 0.89611 0.95277 0.90843 1.21544 0.95025 0.92275 0.99755 1.22938 0.96900 1.00822 0.95785 1.22779 0.98529 0.99870 0.94270 1.23008 0.94667 1.00849 0.98340 1.67906 1.10043 1.30239 1.27443 0.90498 0.91176 0.89856 0.90569 0.86382 0.88327 0.91550 0.90535 0.88040 0.89946 0.90476 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.47 10.31 71.24 0.73 -1.74 16 2 C 0.28 14.85 7.64 138.80 1.06 15.91 16 3 N -0.55 -32.12 7.94 -181.37 -1.44 -33.56 16 4 C 0.23 13.51 6.58 40.29 0.27 13.77 16 5 C -0.45 -24.82 9.20 23.54 0.22 -24.60 16 6 H 0.09 4.79 7.85 -2.91 -0.02 4.76 16 7 C 0.02 1.16 5.50 85.32 0.47 1.63 16 8 N -0.75 -40.25 11.52 21.85 0.25 -39.99 16 9 Si 0.99 37.48 29.56 68.60 2.03 39.51 16 10 H -0.25 -9.06 7.11 99.48 0.71 -8.36 16 11 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 12 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 13 C -0.34 -17.20 8.60 22.94 0.20 -17.01 16 14 C 0.17 8.00 6.22 42.47 0.26 8.27 16 15 C -0.07 -2.40 4.17 -11.02 -0.05 -2.45 16 16 C -0.13 -3.80 7.57 31.18 0.24 -3.56 16 17 C -0.12 -2.73 8.09 31.18 0.25 -2.48 16 18 C -0.13 -3.88 7.47 31.12 0.23 -3.65 16 19 N -0.63 -32.26 10.25 -176.30 -1.81 -34.07 16 20 H 0.08 2.95 8.14 -2.38 -0.02 2.93 16 21 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 22 H 0.08 3.05 8.14 -2.39 -0.02 3.04 16 23 H 0.28 13.62 8.29 -92.70 -0.77 12.86 16 24 H 0.12 5.51 6.66 -2.91 -0.02 5.50 16 25 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 26 H 0.07 2.22 7.79 -2.39 -0.02 2.20 16 27 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.07 2.40 6.28 -2.39 -0.01 2.39 16 Total: -1.00 -66.52 263.96 4.03 -62.49 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 1.12 Total: 21.54 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 3.88 Total: -15.91 kcal Atomic # 7 Polarization: -104.63 SS G_CDS: -3.00 Total: -107.63 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Total: -66.52 4.03 -62.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260617418.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.785 kcal (2) G-P(sol) polarization free energy of solvation -66.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds