Wall clock time and date at job start Mon Mar 30 2020 03:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47434 * 2 1 4 4 N 1.32013 * 118.81267 * 89.99888 * 3 2 1 5 5 C 1.31934 * 121.08058 * 180.02562 * 4 3 2 6 6 C 1.41107 * 118.78050 * 0.02562 * 5 4 3 7 7 C 1.41416 * 121.04983 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00636 * 204.55452 * 7 6 5 9 9 C 1.39966 * 119.99641 * 24.56814 * 7 6 5 10 10 N 1.30816 * 120.00032 * 13.84462 * 9 7 6 11 11 Si 1.86798 * 119.99655 * 193.85269 * 9 7 6 12 12 H 1.48504 * 109.47394 * 89.99453 * 11 9 7 13 13 H 1.48503 * 109.46997 * 209.99391 * 11 9 7 14 14 H 1.48498 * 109.47491 * 329.99558 * 11 9 7 15 15 C 1.41076 * 117.90392 * 0.02562 * 6 5 4 16 16 C 1.50692 * 120.60906 * 180.02562 * 15 6 5 17 17 C 1.52997 * 117.49950 * 171.25137 * 16 15 6 18 18 C 1.53007 * 117.49827 * 239.91040 * 16 15 6 19 19 N 1.31962 * 118.77604 * 0.27029 * 15 6 5 20 20 H 1.08998 * 109.46748 * 299.99848 * 1 2 3 21 21 H 1.08996 * 109.46975 * 59.99786 * 1 2 3 22 22 H 1.09002 * 109.46987 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47041 * 239.99969 * 2 1 3 24 24 H 1.08998 * 109.47358 * 120.00562 * 2 1 3 25 25 H 1.08005 * 120.61290 * 179.97438 * 5 4 3 26 26 H 0.96997 * 119.99497 * 180.02562 * 10 9 7 27 27 H 1.09007 * 115.55379 * 25.57932 * 16 15 6 28 28 H 1.09001 * 117.50042 * 214.99638 * 17 16 15 29 29 H 1.09001 * 117.49980 * 0.02769 * 17 16 15 30 30 H 1.08995 * 117.49686 * 359.97438 * 18 16 15 31 31 H 1.09003 * 117.49899 * 144.97243 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2445 2.0206 1.1567 5 6 2.6835 3.2637 1.2089 6 6 2.9252 3.9502 0.0000 7 6 3.3966 5.2834 0.0000 8 1 3.2095 5.9224 -0.8504 9 6 4.1059 5.7749 1.1020 10 7 4.5682 4.9478 2.0040 11 14 4.3923 7.6117 1.2847 12 1 3.2721 8.2135 2.0516 13 1 5.6684 7.8442 2.0077 14 1 4.4641 8.2377 -0.0600 15 6 2.6816 3.2645 -1.2087 16 6 2.9196 3.9392 -2.5349 17 6 2.8313 3.0739 -3.7936 18 6 1.7241 4.0829 -3.4790 19 7 2.2370 2.0232 -1.1563 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 2.8541 3.7473 2.1595 26 1 5.0594 5.2885 2.7678 27 1 3.6549 4.7439 -2.5279 28 1 3.5085 3.3093 -4.6147 29 1 2.6007 2.0167 -3.6624 30 1 0.7657 3.6891 -3.1409 31 1 1.6727 4.9823 -4.0927 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260636228.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:18 Heat of formation + Delta-G solvation = 25.912358 kcal Electronic energy + Delta-G solvation = -14361.271254 eV Core-core repulsion = 12027.790268 eV Total energy + Delta-G solvation = -2333.480986 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.18099 -37.88221 -36.34290 -34.26888 -33.46471 -31.63195 -27.65051 -25.68594 -24.71337 -23.16200 -22.57801 -21.31934 -19.31920 -18.12692 -17.05358 -16.76548 -15.84884 -15.39907 -15.21021 -14.73059 -14.57404 -14.09239 -13.76496 -13.19499 -12.98304 -12.93294 -12.56142 -12.41862 -12.25519 -12.07893 -11.91881 -11.79730 -11.36503 -11.23216 -10.97608 -10.56559 -9.78123 -9.46938 -8.77779 -6.49584 0.66109 0.82319 1.39527 1.51488 1.54423 2.15756 2.67561 3.08391 3.60279 3.67151 3.82442 3.97114 4.14900 4.35981 4.45730 4.55914 4.62718 4.72552 4.82639 4.93623 5.01381 5.03653 5.12055 5.13738 5.21359 5.34120 5.36581 5.43591 5.76775 5.88117 6.27600 6.45385 6.64509 7.00136 7.93350 8.17736 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.026320 B = 0.010598 C = 0.008003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.559220 B = 2641.326747 C = 3497.944441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.028 4.028 3 C 0.144 3.856 4 N -0.522 5.522 5 C 0.046 3.954 6 C -0.010 4.010 7 C -0.449 4.449 8 H 0.097 0.903 9 C 0.031 3.969 10 N -0.819 5.819 11 Si 0.994 3.006 12 H -0.262 1.262 13 H -0.268 1.268 14 H -0.250 1.250 15 C 0.061 3.939 16 C -0.102 4.102 17 C -0.154 4.154 18 C -0.154 4.154 19 N -0.498 5.498 20 H 0.038 0.962 21 H 0.042 0.958 22 H 0.086 0.914 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.149 0.851 26 H 0.296 0.704 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.305 0.862 -5.268 5.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.067 4.067 3 C -0.119 4.119 4 N -0.236 5.236 5 C -0.125 4.125 6 C -0.016 4.016 7 C -0.478 4.478 8 H 0.115 0.885 9 C -0.186 4.186 10 N -0.444 5.444 11 Si 0.814 3.186 12 H -0.186 1.186 13 H -0.193 1.193 14 H -0.173 1.173 15 C -0.089 4.089 16 C -0.121 4.121 17 C -0.191 4.191 18 C -0.192 4.192 19 N -0.211 5.211 20 H 0.057 0.943 21 H 0.061 0.939 22 H 0.105 0.895 23 H 0.096 0.904 24 H 0.091 0.909 25 H 0.166 0.834 26 H 0.107 0.893 27 H 0.132 0.868 28 H 0.134 0.866 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.513 -0.173 -5.038 5.632 hybrid contribution 0.657 1.498 0.697 1.778 sum -1.856 1.325 -4.340 4.903 Atomic orbital electron populations 1.21591 0.93884 1.02469 1.00625 1.19947 0.96603 0.87863 1.02260 1.22777 1.06332 0.99110 0.83668 1.67640 1.13063 1.11668 1.31214 1.23331 0.99771 0.90416 0.98958 1.19355 0.93221 0.96150 0.92888 1.19842 1.28912 0.95795 1.03290 0.88529 1.27011 0.92350 1.05603 0.93589 1.69773 1.25216 1.39289 1.10115 0.85001 0.78616 0.74916 0.80105 1.18614 1.19271 1.17319 1.21085 1.03407 0.90105 0.94293 1.20590 1.02904 1.02009 0.86627 1.22913 1.01875 0.97047 0.97302 1.22921 0.92693 1.01813 1.01795 1.67252 1.12616 1.10602 1.30585 0.94277 0.93901 0.89471 0.90363 0.90870 0.83440 0.89319 0.86770 0.86600 0.89531 0.90788 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 9.90 71.98 0.71 -3.45 16 2 C -0.03 -1.06 6.35 29.85 0.19 -0.87 16 3 C 0.14 7.14 6.90 138.63 0.96 8.10 16 4 N -0.52 -28.11 10.30 -185.83 -1.91 -30.02 16 5 C 0.05 2.54 9.99 85.38 0.85 3.40 16 6 C -0.01 -0.52 5.61 -21.10 -0.12 -0.64 16 7 C -0.45 -22.60 8.38 23.47 0.20 -22.41 16 8 H 0.10 4.53 6.90 -2.91 -0.02 4.51 16 9 C 0.03 1.46 5.25 85.26 0.45 1.90 16 10 N -0.82 -40.97 10.80 21.83 0.24 -40.73 16 11 Si 0.99 35.23 29.58 68.60 2.03 37.26 16 12 H -0.26 -9.07 7.11 99.48 0.71 -8.37 16 13 H -0.27 -9.13 7.11 99.48 0.71 -8.42 16 14 H -0.25 -8.42 7.11 99.48 0.71 -7.71 16 15 C 0.06 3.08 6.55 43.23 0.28 3.36 16 16 C -0.10 -4.17 5.42 -11.54 -0.06 -4.23 16 17 C -0.15 -5.15 10.04 30.62 0.31 -4.84 16 18 C -0.15 -5.14 10.24 30.62 0.31 -4.82 16 19 N -0.50 -24.71 9.37 -174.11 -1.63 -26.35 16 20 H 0.04 1.35 8.14 -2.39 -0.02 1.34 16 21 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.08 2.77 8.14 -2.38 -0.02 2.75 16 24 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 25 H 0.15 8.38 6.15 -2.91 -0.02 8.36 16 26 H 0.30 13.27 8.30 -92.71 -0.77 12.50 16 27 H 0.11 4.56 7.09 -2.38 -0.02 4.55 16 28 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 29 H 0.09 3.15 7.62 -2.39 -0.02 3.13 16 30 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -60.51 267.21 3.92 -56.59 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 1.12 Total: 27.76 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: 4.08 Total: -24.50 kcal Atomic # 7 Polarization: -93.79 SS G_CDS: -3.31 Total: -97.10 kcal Atomic # 14 Polarization: 35.23 SS G_CDS: 2.03 Total: 37.26 kcal Total: -60.51 3.92 -56.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260636228.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.498 kcal (2) G-P(sol) polarization free energy of solvation -60.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds