Wall clock time and date at job start Mon Mar 30 2020 03:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47179 * 2 1 4 4 N 1.31967 * 120.60908 * 270.25398 * 3 2 1 5 5 C 1.31986 * 121.08404 * 180.25978 * 4 3 2 6 6 C 1.50698 * 118.81886 * 179.75975 * 5 4 3 7 7 C 1.52999 * 117.50058 * 119.72697 * 6 5 4 8 8 C 1.53003 * 60.03022 * 107.47783 * 7 6 5 9 9 N 1.32020 * 122.36331 * 359.47018 * 5 4 3 10 10 C 1.31929 * 121.08537 * 0.26919 * 9 5 4 11 11 C 1.41065 * 120.60995 * 90.00287 * 3 2 1 12 12 C 1.41421 * 121.04743 * 359.97438 * 11 3 2 13 13 H 1.08004 * 119.99870 * 335.53000 * 12 11 3 14 14 C 1.39959 * 119.99974 * 155.53552 * 12 11 3 15 15 N 1.30819 * 120.00085 * 343.70907 * 14 12 11 16 16 Si 1.86800 * 119.99969 * 163.71311 * 14 12 11 17 17 H 1.48493 * 109.47068 * 94.43841 * 16 14 12 18 18 H 1.48496 * 109.47240 * 214.44307 * 16 14 12 19 19 H 1.48504 * 109.46745 * 334.44237 * 16 14 12 20 20 H 1.08996 * 109.46952 * 299.99642 * 1 2 3 21 21 H 1.08997 * 109.47481 * 59.99878 * 1 2 3 22 22 H 1.09005 * 109.47000 * 180.02562 * 1 2 3 23 23 H 1.09011 * 109.46737 * 239.99926 * 2 1 3 24 24 H 1.09000 * 109.47103 * 120.00482 * 2 1 3 25 25 H 1.09001 * 115.54497 * 334.05655 * 6 5 4 26 26 H 1.09001 * 117.49445 * 214.98123 * 7 6 5 27 27 H 1.08998 * 117.49603 * 359.97161 * 7 6 5 28 28 H 1.09001 * 117.49435 * 107.49952 * 8 7 6 29 29 H 1.09001 * 117.49754 * 252.51848 * 8 7 6 30 30 H 1.08000 * 120.60925 * 179.97438 * 10 9 5 31 31 H 0.96989 * 120.00017 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2516 2.0560 -1.1358 5 6 2.6963 3.2986 -1.1467 6 6 2.9342 3.9733 -2.4731 7 6 2.1365 5.2441 -2.7724 8 6 3.6310 5.3361 -2.4577 9 7 2.9349 3.9736 -0.0375 10 6 2.7417 3.4268 1.1475 11 6 2.2718 2.0980 1.2141 12 6 2.0476 1.4651 2.4588 13 1 1.3467 0.6464 2.5298 14 6 2.7337 1.8999 3.5985 15 7 3.7953 2.6542 3.4749 16 14 2.1336 1.4029 5.2963 17 1 2.8603 0.1869 5.7417 18 1 2.3862 2.5092 6.2540 19 1 0.6773 1.1173 5.2425 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 3.1502 3.3063 -3.3077 26 1 1.8280 5.4134 -3.8040 27 1 1.4393 5.5919 -2.0101 28 1 4.3057 5.5660 -3.2824 29 1 3.9170 5.7442 -1.4883 30 1 2.9398 3.9860 2.0500 31 1 4.2711 2.9551 4.2647 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260668724.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:49 Heat of formation + Delta-G solvation = 26.086749 kcal Electronic energy + Delta-G solvation = -14327.616785 eV Core-core repulsion = 11994.143360 eV Total energy + Delta-G solvation = -2333.473424 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.18581 -37.92845 -35.94608 -35.31556 -32.93042 -31.32195 -27.99295 -25.41616 -24.63818 -23.18140 -22.92747 -21.02774 -19.37168 -18.25809 -17.11738 -16.81876 -15.68350 -15.37639 -15.21153 -14.92926 -14.52588 -13.97301 -13.72219 -13.23684 -13.06624 -12.98198 -12.64883 -12.34939 -12.19467 -12.15225 -11.86095 -11.50351 -11.34856 -11.15089 -11.01936 -10.87541 -9.75768 -9.44859 -8.80249 -6.49048 0.65054 0.85338 1.39725 1.48906 1.56491 2.15454 2.61260 3.07529 3.46028 3.67521 3.88584 4.11875 4.16627 4.28038 4.36526 4.61026 4.63791 4.72880 4.79960 4.92924 4.98190 5.08576 5.10145 5.17569 5.26946 5.29639 5.41314 5.44984 5.75510 5.86012 6.27262 6.44722 6.63838 7.00417 7.93473 8.16181 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.030816 B = 0.009558 C = 0.007676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.389006 B = 2928.714034 C = 3646.901227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.045 4.045 3 C 0.034 3.966 4 N -0.505 5.505 5 C 0.167 3.833 6 C -0.089 4.089 7 C -0.154 4.154 8 C -0.153 4.153 9 N -0.514 5.514 10 C 0.044 3.956 11 C -0.009 4.009 12 C -0.449 4.449 13 H 0.100 0.900 14 C 0.033 3.967 15 N -0.816 5.816 16 Si 0.991 3.009 17 H -0.259 1.259 18 H -0.268 1.268 19 H -0.252 1.252 20 H 0.044 0.956 21 H 0.041 0.959 22 H 0.083 0.917 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.119 0.881 26 H 0.125 0.875 27 H 0.070 0.930 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.146 0.854 31 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.131 -1.116 -2.062 3.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.084 4.084 3 C -0.117 4.117 4 N -0.217 5.217 5 C -0.095 4.095 6 C -0.109 4.109 7 C -0.192 4.192 8 C -0.191 4.191 9 N -0.227 5.227 10 C -0.126 4.126 11 C -0.015 4.015 12 C -0.478 4.478 13 H 0.118 0.882 14 C -0.184 4.184 15 N -0.440 5.440 16 Si 0.811 3.189 17 H -0.183 1.183 18 H -0.192 1.192 19 H -0.175 1.175 20 H 0.063 0.937 21 H 0.060 0.940 22 H 0.102 0.898 23 H 0.086 0.914 24 H 0.095 0.905 25 H 0.137 0.863 26 H 0.143 0.857 27 H 0.088 0.912 28 H 0.140 0.860 29 H 0.100 0.900 30 H 0.163 0.837 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.767 -0.532 -2.866 4.019 hybrid contribution 0.024 -0.351 1.713 1.749 sum -2.743 -0.883 -1.153 3.103 Atomic orbital electron populations 1.21585 0.93922 1.02351 1.00834 1.20105 0.96639 0.89537 1.02073 1.22013 1.04432 0.97625 0.87659 1.67273 1.12412 1.10404 1.31636 1.21717 1.05315 0.89323 0.93160 1.20336 1.07843 0.90297 0.92405 1.22932 0.94341 0.99291 1.02627 1.22930 0.95305 0.97641 1.03183 1.67486 1.15956 1.39906 0.99365 1.23250 1.02221 0.93360 0.93803 1.19386 0.93285 0.93518 0.95345 1.19867 1.20875 1.15543 0.91487 0.88182 1.27010 0.92706 0.92839 1.05885 1.69792 1.13183 1.26375 1.34669 0.85037 0.80193 0.79034 0.74681 1.18324 1.19207 1.17513 0.93691 0.94006 0.89812 0.91393 0.90467 0.86310 0.85694 0.91161 0.86011 0.90048 0.83699 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 9.89 71.98 0.71 -3.70 16 2 C -0.05 -1.83 5.72 29.85 0.17 -1.66 16 3 C 0.03 1.68 6.15 43.23 0.27 1.95 16 4 N -0.50 -25.79 10.24 -174.10 -1.78 -27.57 16 5 C 0.17 8.43 7.31 138.62 1.01 9.45 16 6 C -0.09 -3.53 6.23 -11.52 -0.07 -3.60 16 7 C -0.15 -5.06 10.23 30.59 0.31 -4.74 16 8 C -0.15 -5.15 10.01 30.62 0.31 -4.84 16 9 N -0.51 -27.50 9.29 -185.83 -1.73 -29.22 16 10 C 0.04 2.45 10.00 85.38 0.85 3.30 16 11 C -0.01 -0.47 5.60 -21.10 -0.12 -0.59 16 12 C -0.45 -22.19 8.25 23.47 0.19 -22.00 16 13 H 0.10 4.57 6.85 -2.91 -0.02 4.55 16 14 C 0.03 1.52 5.21 85.26 0.44 1.97 16 15 N -0.82 -40.40 10.94 21.83 0.24 -40.17 16 16 Si 0.99 34.73 29.59 68.60 2.03 36.76 16 17 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 18 H -0.27 -9.09 7.11 99.48 0.71 -8.38 16 19 H -0.25 -8.54 7.11 99.48 0.71 -7.83 16 20 H 0.04 1.61 8.04 -2.39 -0.02 1.59 16 21 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 23 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 24 H 0.08 3.04 6.88 -2.39 -0.02 3.03 16 25 H 0.12 4.33 8.14 -2.39 -0.02 4.31 16 26 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 27 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 29 H 0.08 3.14 7.52 -2.39 -0.02 3.12 16 30 H 0.15 8.15 6.23 -2.91 -0.02 8.14 16 31 H 0.30 13.15 8.29 -92.72 -0.77 12.38 16 Total: -1.00 -60.64 266.79 3.97 -56.68 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 1.12 Total: 28.00 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 4.08 Total: -24.47 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -3.27 Total: -96.96 kcal Atomic # 14 Polarization: 34.73 SS G_CDS: 2.03 Total: 36.76 kcal Total: -60.64 3.97 -56.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260668724.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.764 kcal (2) G-P(sol) polarization free energy of solvation -60.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds