Wall clock time and date at job start Mon Mar 30 2020 02:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30688 * 1 3 3 Si 1.86803 * 120.00056 * 2 1 4 4 H 1.48496 * 109.46998 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47265 * 300.00046 * 3 2 1 6 6 H 1.48495 * 109.47289 * 60.00333 * 3 2 1 7 7 C 1.40065 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99779 * 179.97438 * 7 2 1 9 9 C 1.41590 * 120.00025 * 359.97438 * 7 2 1 10 10 N 1.33451 * 119.28397 * 180.02562 * 9 7 2 11 11 C 1.31894 * 120.68908 * 179.97438 * 10 9 7 12 12 C 1.39073 * 119.25959 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.66477 * 179.97438 * 12 11 10 14 14 C 1.54276 * 110.02935 * 237.90357 * 13 12 11 15 15 C 1.54964 * 104.15700 * 217.13513 * 14 13 12 16 16 C 1.54883 * 102.78195 * 37.88949 * 15 14 13 17 17 C 1.53872 * 110.03653 * 120.68907 * 13 12 11 18 18 C 1.39080 * 118.67615 * 359.97438 * 12 11 10 19 19 N 1.31895 * 119.25304 * 0.02562 * 18 12 11 20 20 H 0.97009 * 119.99552 * 359.97438 * 1 2 3 21 21 H 1.08004 * 120.37500 * 179.72229 * 11 10 9 22 22 H 1.08999 * 110.01672 * 359.29191 * 13 12 11 23 23 H 1.08994 * 110.48803 * 335.78010 * 14 13 12 24 24 H 1.09002 * 110.48142 * 98.42688 * 14 13 12 25 25 H 1.08999 * 110.72019 * 279.57341 * 15 14 13 26 26 H 1.09001 * 110.92165 * 156.30512 * 15 14 13 27 27 H 1.08997 * 110.48952 * 203.40726 * 16 15 14 28 28 H 1.09001 * 110.59598 * 80.81609 * 16 15 14 29 29 H 1.08996 * 110.03441 * 238.57016 * 17 13 12 30 30 H 1.09003 * 110.03054 * 359.97438 * 17 13 12 31 31 H 1.07998 * 120.37417 * 179.97438 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 3.7009 1.3464 -0.0006 5 1 1.8822 2.3965 -1.2125 6 1 1.8823 2.3964 1.2125 7 6 2.0072 -1.2130 -0.0005 8 1 3.0872 -1.2130 -0.0010 9 6 1.2992 -2.4392 -0.0005 10 7 1.9808 -3.5865 -0.0005 11 6 1.3495 -4.7446 0.0000 12 6 -0.0412 -4.7607 0.0000 13 6 -0.7947 -6.0657 0.0000 14 6 -1.7259 -6.1382 -1.2280 15 6 -2.9941 -6.8554 -0.7001 16 6 -3.1463 -6.2755 0.7280 17 6 -1.6973 -6.1534 1.2431 18 6 -0.7226 -3.5482 0.0000 19 7 -0.0353 -2.4225 -0.0005 20 1 -0.4850 0.8402 0.0004 21 1 1.9062 -5.6701 -0.0046 22 1 -0.0944 -6.9009 -0.0127 23 1 -1.9728 -5.1364 -1.5792 24 1 -1.2618 -6.7194 -2.0248 25 1 -2.8407 -7.9340 -0.6647 26 1 -3.8627 -6.6103 -1.3112 27 1 -3.7187 -6.9569 1.3575 28 1 -3.6234 -5.2960 0.6953 29 1 -1.4356 -7.0315 1.8334 30 1 -1.5899 -5.2521 1.8467 31 1 -1.8024 -3.5287 -0.0005 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260691673.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:48 Heat of formation + Delta-G solvation = 21.552990 kcal Electronic energy + Delta-G solvation = -14274.702113 eV Core-core repulsion = 11941.032091 eV Total energy + Delta-G solvation = -2333.670023 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.23213 -37.31538 -33.73301 -31.68603 -31.08170 -28.28571 -27.97772 -25.25185 -22.80705 -21.73613 -20.28521 -19.06043 -17.79312 -16.24378 -15.24009 -15.18953 -14.57541 -14.33591 -13.16348 -13.06260 -12.77140 -12.67078 -12.01916 -11.35642 -11.24956 -11.16792 -11.01155 -10.79179 -10.69703 -10.66020 -10.34515 -10.23801 -10.11830 -9.41618 -9.03333 -8.90210 -7.76242 -7.25607 -6.50438 -4.66671 2.60312 3.00446 3.07198 3.11400 3.13437 3.90612 4.64838 5.02713 5.06809 5.13323 5.73830 5.80242 5.84017 5.88488 5.93071 5.97623 6.03920 6.07104 6.13292 6.24165 6.34946 6.44045 6.46303 6.63686 6.69124 6.80802 6.99486 7.13591 7.43962 7.71561 8.21177 8.55103 8.62716 9.14806 10.16179 10.32421 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.055912 B = 0.007073 C = 0.006623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.666635 B = 3957.588639 C = 4226.695903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.066 3.934 3 Si 0.917 3.083 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.403 4.403 8 H 0.092 0.908 9 C 0.387 3.613 10 N -0.596 5.596 11 C 0.163 3.837 12 C -0.334 4.334 13 C -0.015 4.015 14 C -0.116 4.116 15 C -0.125 4.125 16 C -0.124 4.124 17 C -0.117 4.117 18 C 0.165 3.835 19 N -0.507 5.507 20 H 0.274 0.726 21 H 0.125 0.875 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.780 -6.980 -0.014 8.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.335 5.335 2 C -0.160 4.160 3 Si 0.741 3.259 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.438 4.438 8 H 0.110 0.890 9 C 0.150 3.850 10 N -0.315 5.315 11 C -0.009 4.009 12 C -0.343 4.343 13 C -0.035 4.035 14 C -0.154 4.154 15 C -0.162 4.162 16 C -0.161 4.161 17 C -0.155 4.155 18 C -0.010 4.010 19 N -0.223 5.223 20 H 0.085 0.915 21 H 0.142 0.858 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.404 -5.845 -0.011 7.318 hybrid contribution -0.224 -0.216 0.015 0.311 sum -4.627 -6.060 0.004 7.625 Atomic orbital electron populations 1.70153 1.07276 1.27932 1.28141 1.26105 0.95012 1.01361 0.93561 0.86114 0.80857 0.80386 0.78572 1.18175 1.19727 1.19723 1.19396 0.94686 0.87675 1.42002 0.89027 1.19997 0.85900 0.90829 0.88309 1.68665 1.41004 0.98537 1.23321 1.22418 0.90908 0.95762 0.91820 1.20720 0.95557 0.95533 1.22503 1.20147 0.95216 0.94824 0.93270 1.22518 0.94940 1.00443 0.97504 1.22505 0.97999 0.99387 0.96358 1.22354 0.97120 1.00513 0.96139 1.22275 0.94088 1.01277 0.97846 1.22675 0.98870 0.88336 0.91077 1.69386 1.08431 1.26701 1.17828 0.91510 0.85779 0.92096 0.91424 0.92472 0.92123 0.92254 0.92524 0.91811 0.92781 0.91658 0.85874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -19.01 11.43 55.55 0.63 -18.37 16 2 C 0.07 1.70 5.50 -17.35 -0.10 1.60 16 3 Si 0.92 18.77 29.56 -169.99 -5.02 13.74 16 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.40 -11.25 9.38 -37.62 -0.35 -11.60 16 8 H 0.09 2.47 7.85 -52.49 -0.41 2.06 16 9 C 0.39 11.13 7.37 -158.31 -1.17 9.96 16 10 N -0.60 -16.12 10.36 -12.64 -0.13 -16.25 16 11 C 0.16 3.77 10.96 -17.22 -0.19 3.58 16 12 C -0.33 -7.16 4.72 -104.00 -0.49 -7.65 16 13 C -0.01 -0.25 3.16 -90.65 -0.29 -0.53 16 14 C -0.12 -1.77 6.29 -25.03 -0.16 -1.92 16 15 C -0.12 -1.58 6.91 -24.70 -0.17 -1.75 16 16 C -0.12 -1.63 6.83 -25.07 -0.17 -1.80 16 17 C -0.12 -1.78 6.26 -25.61 -0.16 -1.95 16 18 C 0.17 3.94 9.46 -17.21 -0.16 3.78 16 19 N -0.51 -14.18 7.88 -12.64 -0.10 -14.28 16 20 H 0.27 6.53 8.29 -40.82 -0.34 6.20 16 21 H 0.12 2.45 8.02 -52.48 -0.42 2.02 16 22 H 0.06 0.96 7.97 -51.93 -0.41 0.55 16 23 H 0.07 1.14 6.97 -51.93 -0.36 0.78 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.12 7.30 -51.93 -0.38 0.74 16 31 H 0.12 2.66 7.84 -52.49 -0.41 2.25 16 LS Contribution 260.45 15.07 3.92 3.92 Total: -1.00 -29.71 260.45 -8.17 -37.88 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -4.07 Total: 1.64 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -3.40 Total: -8.28 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.40 Total: -48.90 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.71 -8.17 -37.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260691673.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.435 kcal (2) G-P(sol) polarization free energy of solvation -29.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds