Wall clock time and date at job start Mon Mar 30 2020 02:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30688 * 1 3 3 Si 1.86803 * 120.00056 * 2 1 4 4 H 1.48496 * 109.46998 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47265 * 300.00046 * 3 2 1 6 6 H 1.48495 * 109.47289 * 60.00333 * 3 2 1 7 7 C 1.40065 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99779 * 179.97438 * 7 2 1 9 9 C 1.41590 * 120.00025 * 359.97438 * 7 2 1 10 10 N 1.33451 * 119.28397 * 180.02562 * 9 7 2 11 11 C 1.31894 * 120.68908 * 179.97438 * 10 9 7 12 12 C 1.39073 * 119.25959 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.66477 * 179.97438 * 12 11 10 14 14 C 1.54276 * 110.02935 * 237.90357 * 13 12 11 15 15 C 1.54964 * 104.15700 * 217.13513 * 14 13 12 16 16 C 1.54883 * 102.78195 * 37.88949 * 15 14 13 17 17 C 1.53872 * 110.03653 * 120.68907 * 13 12 11 18 18 C 1.39080 * 118.67615 * 359.97438 * 12 11 10 19 19 N 1.31895 * 119.25304 * 0.02562 * 18 12 11 20 20 H 0.97009 * 119.99552 * 359.97438 * 1 2 3 21 21 H 1.08004 * 120.37500 * 179.72229 * 11 10 9 22 22 H 1.08999 * 110.01672 * 359.29191 * 13 12 11 23 23 H 1.08994 * 110.48803 * 335.78010 * 14 13 12 24 24 H 1.09002 * 110.48142 * 98.42688 * 14 13 12 25 25 H 1.08999 * 110.72019 * 279.57341 * 15 14 13 26 26 H 1.09001 * 110.92165 * 156.30512 * 15 14 13 27 27 H 1.08997 * 110.48952 * 203.40726 * 16 15 14 28 28 H 1.09001 * 110.59598 * 80.81609 * 16 15 14 29 29 H 1.08996 * 110.03441 * 238.57016 * 17 13 12 30 30 H 1.09003 * 110.03054 * 359.97438 * 17 13 12 31 31 H 1.07998 * 120.37417 * 179.97438 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 3.7009 1.3464 -0.0006 5 1 1.8822 2.3965 -1.2125 6 1 1.8823 2.3964 1.2125 7 6 2.0072 -1.2130 -0.0005 8 1 3.0872 -1.2130 -0.0010 9 6 1.2992 -2.4392 -0.0005 10 7 1.9808 -3.5865 -0.0005 11 6 1.3495 -4.7446 0.0000 12 6 -0.0412 -4.7607 0.0000 13 6 -0.7947 -6.0657 0.0000 14 6 -1.7259 -6.1382 -1.2280 15 6 -2.9941 -6.8554 -0.7001 16 6 -3.1463 -6.2755 0.7280 17 6 -1.6973 -6.1534 1.2431 18 6 -0.7226 -3.5482 0.0000 19 7 -0.0353 -2.4225 -0.0005 20 1 -0.4850 0.8402 0.0004 21 1 1.9062 -5.6701 -0.0046 22 1 -0.0944 -6.9009 -0.0127 23 1 -1.9728 -5.1364 -1.5792 24 1 -1.2618 -6.7194 -2.0248 25 1 -2.8407 -7.9340 -0.6647 26 1 -3.8627 -6.6103 -1.3112 27 1 -3.7187 -6.9569 1.3575 28 1 -3.6234 -5.2960 0.6953 29 1 -1.4356 -7.0315 1.8334 30 1 -1.5899 -5.2521 1.8467 31 1 -1.8024 -3.5287 -0.0005 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260691673.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:48 Heat of formation + Delta-G solvation = 4.350659 kcal Electronic energy + Delta-G solvation = -14275.448062 eV Core-core repulsion = 11941.032091 eV Total energy + Delta-G solvation = -2334.415972 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.05590 -38.70343 -35.63353 -33.66589 -32.77883 -29.66567 -29.45028 -26.97085 -24.71761 -23.55650 -21.37161 -20.48118 -19.74070 -18.05161 -17.00964 -16.65372 -16.00062 -15.90963 -14.94843 -14.48521 -14.43015 -14.11564 -13.84970 -13.04911 -12.96322 -12.74816 -12.49420 -12.33265 -11.91793 -11.87681 -11.81771 -11.45260 -11.40401 -11.26165 -11.02381 -10.71756 -9.63031 -9.23609 -8.41935 -6.69781 0.73004 1.06604 1.39311 1.49434 1.56709 2.20580 2.74996 3.80279 3.86230 3.93694 4.03631 4.05495 4.07214 4.47228 4.54450 4.65854 4.75002 4.81118 4.84737 4.93269 5.03191 5.11959 5.17326 5.25316 5.30275 5.42263 5.47619 5.56065 5.72774 5.87394 6.16945 6.55124 6.65189 7.19958 8.23608 8.38834 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.055912 B = 0.007073 C = 0.006623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.666635 B = 3957.588639 C = 4226.695903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.751 5.751 2 C 0.023 3.977 3 Si 1.000 3.000 4 H -0.257 1.257 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.445 4.445 8 H 0.086 0.914 9 C 0.357 3.643 10 N -0.623 5.623 11 C 0.145 3.855 12 C -0.309 4.309 13 C -0.017 4.017 14 C -0.117 4.117 15 C -0.115 4.115 16 C -0.122 4.122 17 C -0.115 4.115 18 C 0.149 3.851 19 N -0.541 5.541 20 H 0.283 0.717 21 H 0.161 0.839 22 H 0.079 0.921 23 H 0.044 0.956 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.498 -8.259 -0.041 9.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.199 4.199 3 Si 0.819 3.181 4 H -0.180 1.180 5 H -0.185 1.185 6 H -0.185 1.185 7 C -0.480 4.480 8 H 0.104 0.896 9 C 0.119 3.881 10 N -0.343 5.343 11 C -0.025 4.025 12 C -0.318 4.318 13 C -0.037 4.037 14 C -0.155 4.155 15 C -0.152 4.152 16 C -0.159 4.159 17 C -0.153 4.153 18 C -0.024 4.024 19 N -0.259 5.259 20 H 0.094 0.906 21 H 0.178 0.822 22 H 0.098 0.902 23 H 0.063 0.937 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.154 -7.184 -0.038 8.842 hybrid contribution -0.067 -0.019 0.028 0.075 sum -5.221 -7.203 -0.011 8.896 Atomic orbital electron populations 1.70217 1.08906 1.29522 1.28704 1.27060 0.95911 1.04632 0.92329 0.84909 0.79066 0.74974 0.79188 1.18009 1.18536 1.18532 1.19687 0.94712 0.88998 1.44610 0.89595 1.20372 0.86594 0.91802 0.89375 1.68669 1.41831 0.99351 1.24470 1.23116 0.92146 0.95986 0.91237 1.21181 0.95296 0.97017 1.18278 1.20303 0.95815 0.92430 0.95127 1.22485 0.96099 0.99870 0.97018 1.22475 0.96887 1.00201 0.95649 1.22356 0.95769 1.00803 0.96985 1.22231 0.95278 1.00917 0.96871 1.23066 0.99674 0.88638 0.90988 1.69318 1.08478 1.28738 1.19339 0.90614 0.82165 0.90221 0.93735 0.91354 0.90009 0.90994 0.90115 0.92795 0.90698 0.94372 0.84298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.15 11.43 21.84 0.25 -40.90 16 2 C 0.02 1.23 5.50 85.31 0.47 1.70 16 3 Si 1.00 39.05 29.56 68.60 2.03 41.08 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 5 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 6 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 7 C -0.44 -25.87 9.38 23.54 0.22 -25.65 16 8 H 0.09 4.86 7.85 -2.91 -0.02 4.84 16 9 C 0.36 21.36 7.37 135.15 1.00 22.36 16 10 N -0.62 -34.55 10.36 -193.91 -2.01 -36.56 16 11 C 0.15 6.69 10.96 84.88 0.93 7.62 16 12 C -0.31 -13.11 4.72 -19.46 -0.09 -13.20 16 13 C -0.02 -0.53 3.16 -10.81 -0.03 -0.56 16 14 C -0.12 -3.26 6.29 31.70 0.20 -3.06 16 15 C -0.11 -2.47 6.91 31.91 0.22 -2.25 16 16 C -0.12 -2.83 6.83 31.67 0.22 -2.61 16 17 C -0.12 -3.23 6.26 31.32 0.20 -3.03 16 18 C 0.15 7.24 9.46 84.89 0.80 8.04 16 19 N -0.54 -31.35 7.88 -193.91 -1.53 -32.88 16 20 H 0.28 13.78 8.29 -92.70 -0.77 13.01 16 21 H 0.16 6.02 8.02 -2.91 -0.02 6.00 16 22 H 0.08 2.23 7.97 -2.39 -0.02 2.21 16 23 H 0.04 1.44 6.97 -2.39 -0.02 1.43 16 24 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.04 1.27 7.30 -2.39 -0.02 1.25 16 31 H 0.14 6.10 7.84 -2.91 -0.02 6.08 16 Total: -1.00 -66.84 260.45 3.98 -62.86 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 1.11 Total: 17.05 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 4.12 Total: -10.66 kcal Atomic # 7 Polarization: -107.05 SS G_CDS: -3.29 Total: -110.34 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -66.84 3.98 -62.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260691673.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.215 kcal (2) G-P(sol) polarization free energy of solvation -66.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds