Wall clock time and date at job start Mon Mar 30 2020 02:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00009 * 2 1 4 4 H 1.48508 * 109.46885 * 239.99710 * 3 2 1 5 5 H 1.48498 * 109.47343 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47291 * 119.99869 * 3 2 1 7 7 C 1.37880 * 119.99639 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99276 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00284 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47064 * 179.97438 * 10 9 7 12 12 C 1.38618 * 120.45147 * 84.97339 * 11 10 9 13 13 C 1.38570 * 118.40217 * 180.02562 * 12 11 10 14 14 N 1.32348 * 119.10510 * 359.73169 * 13 12 11 15 15 C 1.31779 * 120.81660 * 0.54164 * 14 13 12 16 16 C 1.50706 * 119.12262 * 179.71877 * 15 14 13 17 17 C 1.53000 * 117.49681 * 299.73408 * 16 15 14 18 18 C 1.53002 * 60.02940 * 107.47810 * 17 16 15 19 19 N 1.31804 * 121.75524 * 359.44597 * 15 14 13 20 20 H 0.96993 * 120.00031 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47024 * 59.99743 * 9 7 2 22 22 H 1.09003 * 109.47131 * 299.99866 * 9 7 2 23 23 H 1.08998 * 109.47300 * 59.99437 * 10 9 7 24 24 H 1.09003 * 109.46835 * 299.99800 * 10 9 7 25 25 H 1.08008 * 120.80022 * 0.04365 * 12 11 10 26 26 H 1.08012 * 120.44848 * 180.02562 * 13 12 11 27 27 H 1.08999 * 115.54993 * 154.06600 * 16 15 14 28 28 H 1.09002 * 117.49833 * 214.97915 * 17 16 15 29 29 H 1.09002 * 117.49953 * 359.97438 * 17 16 15 30 30 H 1.09000 * 117.49996 * 107.50493 * 18 17 16 31 31 H 1.08999 * 117.49664 * 252.51862 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4917 -4.9672 0.0025 12 6 1.0503 -5.5241 -1.1877 13 6 0.3611 -6.7253 -1.1377 14 7 0.1533 -7.2998 0.0363 15 6 0.5833 -6.7384 1.1483 16 6 0.3200 -7.4228 2.4649 17 6 -1.1394 -7.6588 2.8590 18 6 -0.2657 -8.8363 2.4218 19 7 1.2421 -5.5968 1.1392 20 1 -0.4850 0.8400 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6239 -2.5567 0.8903 23 1 2.8713 -3.6040 0.8922 24 1 2.8725 -3.6048 -0.8878 25 1 1.2392 -5.0338 -2.1313 26 1 0.0026 -7.1888 -2.0450 27 1 1.0262 -7.1941 3.2631 28 1 -1.3933 -7.5858 3.9165 29 1 -1.9091 -7.3187 2.1661 30 1 0.0551 -9.5381 3.1917 31 1 -0.4605 -9.2707 1.4412 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260707771.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:38 Heat of formation + Delta-G solvation = 54.702101 kcal Electronic energy + Delta-G solvation = -13719.604260 eV Core-core repulsion = 11387.371690 eV Total energy + Delta-G solvation = -2332.232569 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.78659 -37.06252 -34.63014 -33.02163 -31.96932 -29.88630 -25.86742 -24.87707 -23.17172 -22.31042 -21.42526 -19.93249 -17.43543 -16.62112 -16.03258 -15.27982 -14.79312 -14.52676 -14.31695 -13.95148 -13.04878 -12.66653 -12.30269 -12.00692 -11.51708 -11.36047 -10.94712 -10.81440 -10.75722 -10.65286 -10.38010 -10.26040 -9.95762 -9.53123 -9.25898 -8.84836 -8.74414 -8.39204 -6.04076 -4.07812 1.22486 1.47015 3.31957 3.36408 3.38700 3.68545 3.99030 4.23134 4.42895 4.46069 4.89920 4.94380 5.08175 5.14575 5.31860 5.40187 5.51974 5.64879 5.68904 5.87333 6.02955 6.14104 6.21751 6.39759 6.49009 6.68635 6.94427 7.39859 7.58472 7.71469 7.93430 8.32395 8.49313 8.97938 9.56442 11.07197 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.046474 B = 0.005710 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.345006 B = 4902.745703 C = 5149.410296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.034 3.966 10 C -0.072 4.072 11 C 0.204 3.796 12 C -0.234 4.234 13 C 0.144 3.856 14 N -0.536 5.536 15 C 0.343 3.657 16 C -0.097 4.097 17 C -0.157 4.157 18 C -0.156 4.156 19 N -0.515 5.515 20 H 0.262 0.738 21 H 0.018 0.982 22 H 0.020 0.980 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.146 0.854 26 H 0.163 0.837 27 H 0.127 0.873 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.128 -14.428 0.759 14.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.004 4.004 10 C -0.110 4.110 11 C 0.058 3.942 12 C -0.256 4.256 13 C -0.021 4.021 14 N -0.251 5.251 15 C 0.075 3.925 16 C -0.117 4.117 17 C -0.195 4.195 18 C -0.194 4.194 19 N -0.229 5.229 20 H 0.072 0.928 21 H 0.036 0.964 22 H 0.039 0.961 23 H 0.094 0.906 24 H 0.093 0.907 25 H 0.164 0.836 26 H 0.180 0.820 27 H 0.145 0.855 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.181 -14.750 1.599 14.838 hybrid contribution 0.528 1.493 -0.940 1.841 sum 0.347 -13.257 0.659 13.278 Atomic orbital electron populations 1.69959 1.06131 1.26886 1.50328 1.25019 0.94854 0.99337 0.95112 0.86603 0.79535 0.82865 0.78686 1.20166 1.21261 1.20128 1.21134 0.93069 0.90610 1.51326 0.92392 1.19046 0.93513 0.90141 0.97703 1.20936 0.98606 0.88876 1.02608 1.22324 0.89813 0.94695 0.87328 1.22787 1.02998 0.98587 1.01199 1.23064 0.91752 0.91570 0.95718 1.68000 1.22397 1.35806 0.98870 1.22043 0.89624 0.88094 0.92705 1.20593 0.98612 0.99044 0.93430 1.22956 0.92190 1.02273 1.02073 1.22996 1.02695 0.90022 1.03671 1.68057 1.15289 1.08612 1.30903 0.92830 0.96401 0.96123 0.90606 0.90736 0.83617 0.81955 0.85547 0.88081 0.88631 0.88483 0.87371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.03 0.88 4.96 -27.88 -0.14 0.74 16 10 C -0.07 -1.51 5.47 -27.88 -0.15 -1.66 16 11 C 0.20 3.98 6.08 -82.24 -0.50 3.48 16 12 C -0.23 -3.85 9.88 -39.32 -0.39 -4.24 16 13 C 0.14 2.13 11.30 -17.21 -0.19 1.94 16 14 N -0.54 -8.77 9.35 -10.72 -0.10 -8.87 16 15 C 0.34 5.99 7.31 -157.20 -1.15 4.84 16 16 C -0.10 -1.36 6.24 -91.73 -0.57 -1.93 16 17 C -0.16 -1.87 10.23 -26.73 -0.27 -2.14 16 18 C -0.16 -1.74 10.01 -26.69 -0.27 -2.01 16 19 N -0.51 -10.21 10.27 -6.99 -0.07 -10.28 16 20 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 21 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 24 H 0.07 1.42 8.13 -51.93 -0.42 1.00 16 25 H 0.15 2.08 8.06 -52.48 -0.42 1.66 16 26 H 0.16 1.74 8.06 -52.48 -0.42 1.32 16 27 H 0.13 1.66 8.14 -51.93 -0.42 1.24 16 28 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.11 1.28 7.54 -51.93 -0.39 0.89 16 LS Contribution 274.64 15.07 4.14 4.14 Total: -1.00 -31.58 274.64 -8.52 -40.10 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -4.16 Total: -1.00 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -4.05 Total: -14.38 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.56 Total: -45.32 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.58 -8.52 -40.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260707771.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.807 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds