Wall clock time and date at job start Mon Mar 30 2020 02:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00009 * 2 1 4 4 H 1.48508 * 109.46885 * 239.99710 * 3 2 1 5 5 H 1.48498 * 109.47343 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47291 * 119.99869 * 3 2 1 7 7 C 1.37880 * 119.99639 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99276 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00284 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47064 * 179.97438 * 10 9 7 12 12 C 1.38618 * 120.45147 * 84.97339 * 11 10 9 13 13 C 1.38570 * 118.40217 * 180.02562 * 12 11 10 14 14 N 1.32348 * 119.10510 * 359.73169 * 13 12 11 15 15 C 1.31779 * 120.81660 * 0.54164 * 14 13 12 16 16 C 1.50706 * 119.12262 * 179.71877 * 15 14 13 17 17 C 1.53000 * 117.49681 * 299.73408 * 16 15 14 18 18 C 1.53002 * 60.02940 * 107.47810 * 17 16 15 19 19 N 1.31804 * 121.75524 * 359.44597 * 15 14 13 20 20 H 0.96993 * 120.00031 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47024 * 59.99743 * 9 7 2 22 22 H 1.09003 * 109.47131 * 299.99866 * 9 7 2 23 23 H 1.08998 * 109.47300 * 59.99437 * 10 9 7 24 24 H 1.09003 * 109.46835 * 299.99800 * 10 9 7 25 25 H 1.08008 * 120.80022 * 0.04365 * 12 11 10 26 26 H 1.08012 * 120.44848 * 180.02562 * 13 12 11 27 27 H 1.08999 * 115.54993 * 154.06600 * 16 15 14 28 28 H 1.09002 * 117.49833 * 214.97915 * 17 16 15 29 29 H 1.09002 * 117.49953 * 359.97438 * 17 16 15 30 30 H 1.09000 * 117.49996 * 107.50493 * 18 17 16 31 31 H 1.08999 * 117.49664 * 252.51862 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4917 -4.9672 0.0025 12 6 1.0503 -5.5241 -1.1877 13 6 0.3611 -6.7253 -1.1377 14 7 0.1533 -7.2998 0.0363 15 6 0.5833 -6.7384 1.1483 16 6 0.3200 -7.4228 2.4649 17 6 -1.1394 -7.6588 2.8590 18 6 -0.2657 -8.8363 2.4218 19 7 1.2421 -5.5968 1.1392 20 1 -0.4850 0.8400 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6239 -2.5567 0.8903 23 1 2.8713 -3.6040 0.8922 24 1 2.8725 -3.6048 -0.8878 25 1 1.2392 -5.0338 -2.1313 26 1 0.0026 -7.1888 -2.0450 27 1 1.0262 -7.1941 3.2631 28 1 -1.3933 -7.5858 3.9165 29 1 -1.9091 -7.3187 2.1661 30 1 0.0551 -9.5381 3.1917 31 1 -0.4605 -9.2707 1.4412 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260707771.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:38 Heat of formation + Delta-G solvation = 36.144406 kcal Electronic energy + Delta-G solvation = -13720.408982 eV Core-core repulsion = 11387.371690 eV Total energy + Delta-G solvation = -2333.037291 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.09129 -38.12565 -36.30841 -34.78128 -33.52306 -31.57722 -27.73345 -26.11206 -24.77237 -23.23030 -23.03444 -21.34875 -18.72301 -18.62598 -17.42109 -16.59782 -16.44525 -15.93159 -15.60275 -15.20212 -14.75388 -14.46967 -14.09293 -13.29407 -13.11684 -12.82091 -12.62443 -12.38376 -12.01402 -12.00814 -11.88522 -11.76559 -11.39377 -11.35072 -11.18038 -10.58484 -10.16633 -10.12291 -8.22415 -6.35000 -0.07518 0.13580 1.41345 1.44824 1.52706 2.39998 2.57175 2.81104 3.04099 3.11386 3.28163 3.64482 3.91041 3.98513 4.13400 4.17599 4.25252 4.48745 4.62598 4.70255 4.77370 4.85016 4.96678 4.99898 5.15791 5.31855 5.41642 5.49162 5.57371 5.76767 6.11524 6.15891 6.80290 7.16381 7.34906 8.89614 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.046474 B = 0.005710 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.345006 B = 4902.745703 C = 5149.410296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.043 3.957 10 C -0.057 4.057 11 C 0.174 3.826 12 C -0.236 4.236 13 C 0.152 3.848 14 N -0.537 5.537 15 C 0.330 3.670 16 C -0.127 4.127 17 C -0.152 4.152 18 C -0.130 4.130 19 N -0.548 5.548 20 H 0.264 0.736 21 H -0.001 1.001 22 H -0.021 1.021 23 H 0.067 0.933 24 H 0.094 0.906 25 H 0.167 0.833 26 H 0.210 0.790 27 H 0.129 0.871 28 H 0.123 0.877 29 H 0.081 0.919 30 H 0.127 0.873 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.649 -15.359 0.276 15.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.006 3.994 10 C -0.095 4.095 11 C 0.029 3.971 12 C -0.258 4.258 13 C -0.013 4.013 14 N -0.251 5.251 15 C 0.063 3.937 16 C -0.147 4.147 17 C -0.191 4.191 18 C -0.167 4.167 19 N -0.263 5.263 20 H 0.073 0.927 21 H 0.017 0.983 22 H -0.002 1.002 23 H 0.086 0.914 24 H 0.113 0.887 25 H 0.184 0.816 26 H 0.227 0.773 27 H 0.147 0.853 28 H 0.141 0.859 29 H 0.099 0.901 30 H 0.145 0.855 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.356 -15.694 1.118 15.738 hybrid contribution 0.305 1.698 -0.794 1.899 sum 0.661 -13.996 0.324 14.016 Atomic orbital electron populations 1.70106 1.08026 1.28003 1.51362 1.26018 0.95732 1.03561 0.94433 0.85427 0.78186 0.77638 0.79366 1.18620 1.20967 1.19262 1.21600 0.93809 0.91668 1.51075 0.91372 1.18825 0.93759 0.92135 0.94723 1.20629 0.97509 0.88271 1.03139 1.22180 0.91357 0.94738 0.88802 1.23025 1.02679 0.99220 1.00848 1.23835 0.90014 0.90693 0.96776 1.68135 1.22161 1.35680 0.99164 1.22667 0.89027 0.87571 0.94409 1.20778 1.00144 1.01469 0.92330 1.23041 0.90495 1.02453 1.03069 1.23082 1.00413 0.89031 1.04212 1.68001 1.16765 1.09987 1.31545 0.92700 0.98294 1.00215 0.91449 0.88746 0.81550 0.77329 0.85332 0.85850 0.90072 0.85523 0.87924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.50 13.29 21.45 0.28 -57.21 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.54 -30.90 9.11 25.60 0.23 -30.67 16 8 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 9 C 0.04 2.35 4.96 29.85 0.15 2.49 16 10 C -0.06 -2.46 5.47 29.85 0.16 -2.30 16 11 C 0.17 6.88 6.08 42.57 0.26 7.14 16 12 C -0.24 -7.53 9.88 22.44 0.22 -7.31 16 13 C 0.15 4.19 11.30 84.69 0.96 5.14 16 14 N -0.54 -16.85 9.35 -187.84 -1.76 -18.61 16 15 C 0.33 11.49 7.31 138.75 1.01 12.50 16 16 C -0.13 -3.48 6.24 -11.51 -0.07 -3.55 16 17 C -0.15 -3.43 10.23 30.60 0.31 -3.11 16 18 C -0.13 -2.60 10.01 30.62 0.31 -2.29 16 19 N -0.55 -22.24 10.27 -176.02 -1.81 -24.05 16 20 H 0.26 15.27 8.31 -92.71 -0.77 14.49 16 21 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 22 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 23 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 24 H 0.09 3.58 8.13 -2.39 -0.02 3.56 16 25 H 0.17 4.47 8.06 -2.91 -0.02 4.45 16 26 H 0.21 3.66 8.06 -2.90 -0.02 3.63 16 27 H 0.13 3.36 8.14 -2.39 -0.02 3.34 16 28 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.10 2.20 7.54 -2.39 -0.02 2.18 16 Total: -1.00 -69.84 274.64 3.86 -65.98 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 1.11 Total: 9.31 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: 4.01 Total: -21.47 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -3.28 Total: -99.87 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -69.84 3.86 -65.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260707771.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.121 kcal (2) G-P(sol) polarization free energy of solvation -69.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds