Wall clock time and date at job start Mon Mar 30 2020 02:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99560 * 2 1 4 4 H 1.48500 * 109.46861 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47111 * 299.99199 * 3 2 1 6 6 H 1.48497 * 109.47392 * 59.99950 * 3 2 1 7 7 C 1.37871 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99866 * 172.92248 * 7 2 1 9 9 C 1.50701 * 120.00431 * 352.91367 * 7 2 1 10 10 C 1.53003 * 110.34632 * 59.58075 * 9 7 2 11 11 N 1.46903 * 109.46792 * 60.16354 * 10 9 7 12 12 C 1.54416 * 110.30997 * 181.71602 * 9 7 2 13 13 C 1.54397 * 102.44767 * 92.77828 * 12 9 7 14 14 C 1.51189 * 105.20484 * 26.17220 * 13 12 9 15 15 C 1.38329 * 131.27316 * 162.92642 * 14 13 12 16 16 N 1.31842 * 120.75396 * 179.97438 * 15 14 13 17 17 C 1.31879 * 121.78828 * 0.02562 * 16 15 14 18 18 C 1.38216 * 120.71242 * 0.25210 * 17 16 15 19 19 C 1.38474 * 109.68410 * 342.92060 * 14 13 12 20 20 H 0.96998 * 120.00242 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.47095 * 180.16031 * 10 9 7 22 22 H 1.08996 * 109.47332 * 300.15914 * 10 9 7 23 23 H 1.00907 * 110.99806 * 173.98867 * 11 10 9 24 24 H 1.00904 * 110.99991 * 297.93190 * 11 10 9 25 25 H 1.09000 * 110.80965 * 211.01638 * 12 9 7 26 26 H 1.08996 * 110.81075 * 334.34833 * 12 9 7 27 27 H 1.09008 * 110.30133 * 267.23578 * 13 12 9 28 28 H 1.09002 * 110.29740 * 145.09856 * 13 12 9 29 29 H 1.08002 * 119.62429 * 359.96733 * 15 14 13 30 30 H 1.07998 * 119.64586 * 179.97438 * 17 16 15 31 31 H 1.07994 * 120.45315 * 179.72278 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0784 -1.1976 -0.1147 9 6 1.2598 -2.4941 0.1621 10 6 0.2380 -2.6654 -0.9638 11 7 0.9325 -2.6725 -2.2583 12 6 2.2484 -3.6803 0.1736 13 6 2.5275 -3.8662 1.6807 14 6 1.2995 -3.3297 2.3806 15 6 0.8367 -3.5030 3.6726 16 7 -0.2804 -2.9275 4.0715 17 6 -0.9981 -2.1700 3.2650 18 6 -0.6012 -1.9560 1.9585 19 6 0.5715 -2.5406 1.5060 20 1 -0.4850 0.8400 -0.0004 21 1 -0.2938 -3.6076 -0.8316 22 1 -0.4733 -1.8399 -0.9376 23 1 0.2933 -2.8818 -3.0104 24 1 1.4059 -1.7961 -2.4195 25 1 1.7867 -4.5732 -0.2478 26 1 3.1622 -3.4280 -0.3642 27 1 3.4094 -3.2971 1.9751 28 1 2.6635 -4.9226 1.9126 29 1 1.3968 -4.1169 4.3625 30 1 -1.9081 -1.7156 3.6280 31 1 -1.1944 -1.3386 1.3004 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260725222.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:39 Heat of formation + Delta-G solvation = 29.721458 kcal Electronic energy + Delta-G solvation = -15078.148404 eV Core-core repulsion = 12744.832593 eV Total energy + Delta-G solvation = -2333.315811 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.77988 -36.53523 -33.29305 -31.99302 -30.56201 -28.73231 -27.35523 -24.71092 -22.41477 -22.33639 -20.52251 -19.01965 -16.71673 -15.50463 -15.09636 -14.63410 -14.20540 -14.10514 -13.70300 -13.28274 -12.66832 -12.60316 -12.52464 -11.70502 -11.24316 -11.09020 -11.03386 -10.55854 -10.46122 -10.22215 -10.12594 -9.55348 -9.36966 -8.59696 -8.56762 -8.11457 -7.89719 -7.47257 -6.14751 -4.25376 2.12195 2.44925 3.17914 3.27935 3.31476 4.26963 4.82642 5.05908 5.25545 5.47827 5.67446 5.88742 5.93439 6.02784 6.19957 6.28191 6.54214 6.61331 6.64778 6.79696 6.90419 6.96923 7.05568 7.17481 7.40029 7.44544 7.77360 7.80272 7.85411 8.20428 8.36843 8.56352 8.78052 8.87560 9.37809 10.80697 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.024588 B = 0.014160 C = 0.011807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.486575 B = 1976.883733 C = 2370.853521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.064 3.936 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.489 4.489 8 H 0.063 0.937 9 C 0.106 3.894 10 C 0.070 3.930 11 N -0.845 5.845 12 C -0.095 4.095 13 C -0.069 4.069 14 C -0.168 4.168 15 C 0.083 3.917 16 N -0.508 5.508 17 C 0.062 3.938 18 C -0.135 4.135 19 C 0.012 3.988 20 H 0.261 0.739 21 H 0.023 0.977 22 H 0.069 0.931 23 H 0.313 0.687 24 H 0.345 0.655 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.135 0.865 30 H 0.139 0.861 31 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.330 -3.635 0.215 3.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.137 4.137 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.527 4.527 8 H 0.081 0.919 9 C 0.105 3.895 10 C -0.061 4.061 11 N -0.373 5.373 12 C -0.133 4.133 13 C -0.107 4.107 14 C -0.170 4.170 15 C -0.074 4.074 16 N -0.218 5.218 17 C -0.094 4.094 18 C -0.155 4.155 19 C 0.003 3.997 20 H 0.071 0.929 21 H 0.041 0.959 22 H 0.087 0.913 23 H 0.122 0.878 24 H 0.158 0.842 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.152 0.848 30 H 0.156 0.844 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.314 -4.221 1.394 4.456 hybrid contribution 0.043 2.064 -0.878 2.243 sum 0.357 -2.157 0.516 2.246 Atomic orbital electron populations 1.69763 1.05843 1.26401 1.49810 1.24975 0.94911 0.99178 0.94682 0.86522 0.80346 0.83557 0.77601 1.19684 1.21047 1.21025 1.21035 0.93608 0.89223 1.48856 0.91875 1.17774 0.91077 0.93679 0.86944 1.21862 0.96569 0.98298 0.89334 1.58760 1.33777 1.41180 1.03547 1.22237 1.00067 0.98094 0.92900 1.20904 0.94883 0.98751 0.96179 1.21609 0.98960 1.01025 0.95378 1.21840 0.93471 0.98908 0.93206 1.67498 1.06795 1.10006 1.37461 1.22532 0.98844 0.96771 0.91257 1.22145 0.97845 0.99147 0.96357 1.21316 0.90977 0.89000 0.98405 0.92853 0.95871 0.91257 0.87816 0.84205 0.93023 0.91412 0.91146 0.92591 0.84778 0.84381 0.83157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.83 8.18 55.43 0.45 -21.38 16 2 C 0.06 1.60 5.18 -17.82 -0.09 1.51 16 3 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.49 -12.08 6.99 -34.44 -0.24 -12.32 16 8 H 0.06 1.60 7.59 -52.49 -0.40 1.20 16 9 C 0.11 2.41 0.36 -155.89 -0.06 2.35 16 10 C 0.07 1.55 5.29 -3.82 -0.02 1.53 16 11 N -0.85 -16.77 9.23 -10.37 -0.10 -16.86 16 12 C -0.10 -1.94 5.79 -25.26 -0.15 -2.09 16 13 C -0.07 -1.31 6.76 -26.91 -0.18 -1.49 16 14 C -0.17 -3.55 6.19 -104.26 -0.64 -4.20 16 15 C 0.08 1.66 11.19 -17.51 -0.20 1.47 16 16 N -0.51 -10.72 10.36 -13.22 -0.14 -10.86 16 17 C 0.06 1.28 11.19 -17.54 -0.20 1.09 16 18 C -0.13 -3.04 8.96 -39.45 -0.35 -3.39 16 19 C 0.01 0.28 4.61 -104.22 -0.48 -0.20 16 20 H 0.26 6.33 8.31 -40.82 -0.34 5.99 16 21 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.07 1.67 5.87 -51.93 -0.30 1.36 16 23 H 0.31 5.43 9.08 -39.29 -0.36 5.07 16 24 H 0.34 7.21 8.12 -39.29 -0.32 6.89 16 25 H 0.05 1.02 7.91 -51.93 -0.41 0.61 16 26 H 0.07 1.38 7.74 -51.93 -0.40 0.98 16 27 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 30 H 0.14 2.45 8.06 -52.49 -0.42 2.03 16 31 H 0.15 3.50 6.32 -52.49 -0.33 3.16 16 LS Contribution 252.59 15.07 3.81 3.81 Total: -1.00 -25.94 252.59 -7.37 -33.32 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -3.77 Total: 12.71 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -2.61 Total: -15.76 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.22 Total: -49.10 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -25.94 -7.37 -33.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260725222.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.039 kcal (2) G-P(sol) polarization free energy of solvation -25.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds