Wall clock time and date at job start Mon Mar 30 2020 02:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99560 * 2 1 4 4 H 1.48500 * 109.46861 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47111 * 299.99199 * 3 2 1 6 6 H 1.48497 * 109.47392 * 59.99950 * 3 2 1 7 7 C 1.37871 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99866 * 172.92248 * 7 2 1 9 9 C 1.50701 * 120.00431 * 352.91367 * 7 2 1 10 10 C 1.53003 * 110.34632 * 59.58075 * 9 7 2 11 11 N 1.46903 * 109.46792 * 60.16354 * 10 9 7 12 12 C 1.54416 * 110.30997 * 181.71602 * 9 7 2 13 13 C 1.54397 * 102.44767 * 92.77828 * 12 9 7 14 14 C 1.51189 * 105.20484 * 26.17220 * 13 12 9 15 15 C 1.38329 * 131.27316 * 162.92642 * 14 13 12 16 16 N 1.31842 * 120.75396 * 179.97438 * 15 14 13 17 17 C 1.31879 * 121.78828 * 0.02562 * 16 15 14 18 18 C 1.38216 * 120.71242 * 0.25210 * 17 16 15 19 19 C 1.38474 * 109.68410 * 342.92060 * 14 13 12 20 20 H 0.96998 * 120.00242 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.47095 * 180.16031 * 10 9 7 22 22 H 1.08996 * 109.47332 * 300.15914 * 10 9 7 23 23 H 1.00907 * 110.99806 * 173.98867 * 11 10 9 24 24 H 1.00904 * 110.99991 * 297.93190 * 11 10 9 25 25 H 1.09000 * 110.80965 * 211.01638 * 12 9 7 26 26 H 1.08996 * 110.81075 * 334.34833 * 12 9 7 27 27 H 1.09008 * 110.30133 * 267.23578 * 13 12 9 28 28 H 1.09002 * 110.29740 * 145.09856 * 13 12 9 29 29 H 1.08002 * 119.62429 * 359.96733 * 15 14 13 30 30 H 1.07998 * 119.64586 * 179.97438 * 17 16 15 31 31 H 1.07994 * 120.45315 * 179.72278 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0784 -1.1976 -0.1147 9 6 1.2598 -2.4941 0.1621 10 6 0.2380 -2.6654 -0.9638 11 7 0.9325 -2.6725 -2.2583 12 6 2.2484 -3.6803 0.1736 13 6 2.5275 -3.8662 1.6807 14 6 1.2995 -3.3297 2.3806 15 6 0.8367 -3.5030 3.6726 16 7 -0.2804 -2.9275 4.0715 17 6 -0.9981 -2.1700 3.2650 18 6 -0.6012 -1.9560 1.9585 19 6 0.5715 -2.5406 1.5060 20 1 -0.4850 0.8400 -0.0004 21 1 -0.2938 -3.6076 -0.8316 22 1 -0.4733 -1.8399 -0.9376 23 1 0.2933 -2.8818 -3.0104 24 1 1.4059 -1.7961 -2.4195 25 1 1.7867 -4.5732 -0.2478 26 1 3.1622 -3.4280 -0.3642 27 1 3.4094 -3.2971 1.9751 28 1 2.6635 -4.9226 1.9126 29 1 1.3968 -4.1169 4.3625 30 1 -1.9081 -1.7156 3.6280 31 1 -1.1944 -1.3386 1.3004 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260725222.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:39 Heat of formation + Delta-G solvation = 13.881331 kcal Electronic energy + Delta-G solvation = -15078.835284 eV Core-core repulsion = 12744.832593 eV Total energy + Delta-G solvation = -2334.002691 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.41055 -38.19842 -34.98400 -33.77600 -32.21606 -30.37735 -29.01802 -26.53796 -24.08157 -23.96180 -22.12203 -20.75172 -18.47437 -17.20306 -16.75205 -16.44983 -15.85359 -15.71940 -15.34148 -14.98729 -14.37983 -14.20522 -14.11172 -13.39429 -12.99866 -12.88965 -12.77168 -12.32267 -12.09442 -11.88594 -11.77276 -11.31779 -11.06539 -10.47495 -10.21454 -9.82872 -9.50302 -9.15492 -8.00693 -6.16377 0.49909 0.77556 1.37327 1.44343 1.50936 2.41656 3.13721 3.22334 3.73118 3.92480 4.04396 4.29074 4.38831 4.48365 4.58973 4.71990 4.90806 4.99771 5.00300 5.17390 5.29695 5.34968 5.40133 5.50187 5.64289 5.74861 5.97221 6.11407 6.15580 6.38907 6.67196 6.80599 7.05617 7.25510 7.47355 8.91140 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.024588 B = 0.014160 C = 0.011807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.486575 B = 1976.883733 C = 2370.853521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.033 3.967 3 Si 0.937 3.063 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.294 1.294 7 C -0.498 4.498 8 H 0.052 0.948 9 C 0.098 3.902 10 C 0.079 3.921 11 N -0.838 5.838 12 C -0.091 4.091 13 C -0.063 4.063 14 C -0.176 4.176 15 C 0.083 3.917 16 N -0.516 5.516 17 C 0.061 3.939 18 C -0.152 4.152 19 C -0.015 4.015 20 H 0.259 0.741 21 H 0.022 0.978 22 H 0.046 0.954 23 H 0.328 0.672 24 H 0.339 0.661 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.170 0.830 30 H 0.164 0.836 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.927 -4.412 0.824 4.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.168 4.168 3 Si 0.765 3.235 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.220 1.220 7 C -0.536 4.536 8 H 0.070 0.930 9 C 0.097 3.903 10 C -0.052 4.052 11 N -0.366 5.366 12 C -0.129 4.129 13 C -0.101 4.101 14 C -0.178 4.178 15 C -0.074 4.074 16 N -0.225 5.225 17 C -0.095 4.095 18 C -0.172 4.172 19 C -0.024 4.024 20 H 0.068 0.932 21 H 0.041 0.959 22 H 0.064 0.936 23 H 0.138 0.862 24 H 0.152 0.848 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.187 0.813 30 H 0.181 0.819 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.907 -5.008 1.987 5.464 hybrid contribution -0.168 2.284 -1.069 2.528 sum 0.739 -2.724 0.918 2.968 Atomic orbital electron populations 1.69876 1.06265 1.26422 1.50024 1.25429 0.95497 1.00973 0.94906 0.85825 0.79401 0.81250 0.77022 1.19774 1.20745 1.22037 1.21135 0.93146 0.90395 1.48950 0.92989 1.17841 0.91527 0.93753 0.87180 1.21679 0.96140 0.97185 0.90234 1.58710 1.33874 1.40622 1.03374 1.22164 0.99249 0.97235 0.94240 1.20898 0.93898 1.00678 0.94578 1.21920 0.99478 1.00753 0.95674 1.22392 0.93123 0.98409 0.93444 1.67603 1.07281 1.10201 1.37437 1.22884 0.99597 0.96421 0.90588 1.22127 0.98187 0.99829 0.97093 1.21522 0.91739 0.90102 0.98999 0.93154 0.95928 0.93596 0.86182 0.84809 0.92585 0.91753 0.90858 0.89387 0.81315 0.81887 0.84626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.37 8.18 21.45 0.18 -44.19 16 2 C 0.03 1.62 5.18 84.65 0.44 2.05 16 3 Si 0.94 41.12 29.54 68.60 2.03 43.15 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 7 C -0.50 -24.48 6.99 25.60 0.18 -24.30 16 8 H 0.05 2.62 7.59 -2.91 -0.02 2.59 16 9 C 0.10 4.38 0.36 -53.08 -0.02 4.37 16 10 C 0.08 3.46 5.29 86.30 0.46 3.92 16 11 N -0.84 -32.68 9.23 -186.71 -1.72 -34.40 16 12 C -0.09 -3.58 5.79 31.55 0.18 -3.39 16 13 C -0.06 -2.22 6.76 30.48 0.21 -2.01 16 14 C -0.18 -7.11 6.19 -19.63 -0.12 -7.23 16 15 C 0.08 3.12 11.19 84.71 0.95 4.06 16 16 N -0.52 -20.66 10.36 -195.75 -2.03 -22.69 16 17 C 0.06 2.44 11.19 84.68 0.95 3.39 16 18 C -0.15 -6.82 8.96 22.36 0.20 -6.62 16 19 C -0.01 -0.67 4.61 -19.60 -0.09 -0.76 16 20 H 0.26 12.65 8.31 -92.71 -0.77 11.88 16 21 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.05 2.24 5.87 -2.39 -0.01 2.22 16 23 H 0.33 11.06 9.08 -89.69 -0.81 10.25 16 24 H 0.34 14.06 8.12 -89.69 -0.73 13.33 16 25 H 0.06 2.11 7.91 -2.39 -0.02 2.09 16 26 H 0.06 2.53 7.74 -2.39 -0.02 2.51 16 27 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 28 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.17 5.05 8.06 -2.91 -0.02 5.03 16 30 H 0.16 5.54 8.06 -2.91 -0.02 5.52 16 31 H 0.14 6.42 6.32 -2.91 -0.02 6.40 16 Total: -1.00 -53.44 252.59 1.39 -52.05 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: -0.39 Total: 32.62 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: 3.33 Total: -26.53 kcal Atomic # 7 Polarization: -97.70 SS G_CDS: -3.57 Total: -101.28 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -53.44 1.39 -52.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260725222.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.927 kcal (2) G-P(sol) polarization free energy of solvation -53.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds