Wall clock time and date at job start Mon Mar 30 2020 02:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32375 * 120.48412 * 2 1 4 4 C 1.31782 * 120.77340 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.09709 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46656 * 90.00365 * 5 4 3 7 7 H 1.07995 * 120.00186 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99812 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99970 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00219 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46932 * 60.00018 * 10 8 6 12 12 H 1.48499 * 109.47362 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47044 * 300.00581 * 10 8 6 14 14 N 1.31792 * 121.81255 * 0.02562 * 4 3 2 15 15 C 1.32426 * 120.79986 * 359.97438 * 14 4 3 16 16 C 1.38454 * 118.99671 * 359.75930 * 15 14 4 17 17 C 1.51054 * 109.87269 * 179.83170 * 16 15 14 18 18 C 1.54410 * 105.21099 * 343.32860 * 17 16 15 19 19 C 1.51169 * 131.30124 * 180.02562 * 15 14 4 20 20 H 1.09001 * 109.46953 * 89.99938 * 1 2 3 21 21 H 1.09000 * 109.47318 * 209.99536 * 1 2 3 22 22 H 1.09000 * 109.47161 * 330.00166 * 1 2 3 23 23 H 1.08993 * 109.47295 * 210.00561 * 5 4 3 24 24 H 1.09000 * 109.46904 * 330.00880 * 5 4 3 25 25 H 0.96996 * 119.99842 * 179.97438 * 9 8 6 26 26 H 1.08997 * 110.44378 * 224.30010 * 17 16 15 27 27 H 1.09005 * 110.19014 * 102.22400 * 17 16 15 28 28 H 1.08998 * 110.81141 * 267.68667 * 18 17 16 29 29 H 1.09003 * 110.97847 * 144.23963 * 18 17 16 30 30 H 1.08999 * 110.29988 * 315.96271 * 19 15 14 31 31 H 1.08996 * 110.30307 * 78.01506 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1786 1.1408 0.0000 4 6 3.4964 1.1474 0.0005 5 6 4.2226 2.4679 0.0011 6 6 4.4641 2.9076 1.4221 7 1 4.1260 2.2922 2.2427 8 6 5.1177 4.0951 1.6746 9 7 5.5299 4.8442 0.6754 10 14 5.4165 4.6406 3.4360 11 1 6.2394 3.6221 4.1368 12 1 6.1322 5.9417 3.4367 13 1 4.1151 4.7916 4.1350 14 7 4.1968 0.0310 0.0005 15 6 3.5935 -1.1479 0.0005 16 6 2.2098 -1.1938 0.0056 17 6 1.7436 -2.6306 0.0005 18 6 2.9747 -3.4543 -0.4357 19 6 4.1500 -2.5534 0.0011 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 5.1776 2.3576 -0.5125 24 1 3.6179 3.2152 -0.5127 25 1 5.9894 5.6798 0.8530 26 1 0.9281 -2.7637 -0.7104 27 1 1.4253 -2.9264 1.0002 28 1 2.9798 -3.6007 -1.5158 29 1 3.0071 -4.4122 0.0835 30 1 4.9728 -2.6346 -0.7092 31 1 4.4862 -2.8267 1.0012 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260811741.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:28 Heat of formation + Delta-G solvation = 26.538556 kcal Electronic energy + Delta-G solvation = -14140.158395 eV Core-core repulsion = 11806.704563 eV Total energy + Delta-G solvation = -2333.453832 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.83178 -36.71593 -34.11243 -32.98616 -30.73260 -28.88756 -27.96001 -26.79561 -23.71893 -22.09193 -20.58777 -20.27003 -17.37987 -16.42987 -15.75060 -14.92964 -14.36125 -14.02581 -13.97129 -13.07136 -12.87006 -12.59537 -12.55163 -12.15639 -11.97369 -11.85315 -11.31669 -11.18609 -11.06912 -10.79658 -10.62293 -10.27739 -9.66927 -9.63433 -9.47255 -8.43700 -8.38873 -8.28744 -6.03404 -4.05658 1.58032 1.71823 3.35276 3.38035 3.41891 4.23463 4.33304 4.52539 4.58199 4.67323 4.91379 4.96331 5.10074 5.33131 5.34278 5.64430 5.65755 5.69760 5.77814 5.83295 5.86174 5.91370 6.10848 6.15667 6.33811 6.40994 7.13999 7.51322 7.54173 7.80356 7.90694 8.25681 8.93560 9.02614 9.55660 11.07699 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.038790 B = 0.007361 C = 0.006879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.664007 B = 3802.790512 C = 4069.658151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.179 3.821 3 N -0.518 5.518 4 C 0.367 3.633 5 C 0.081 3.919 6 C -0.505 4.505 7 H 0.052 0.948 8 C 0.061 3.939 9 N -0.893 5.893 10 Si 0.901 3.099 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.276 1.276 14 N -0.516 5.516 15 C 0.161 3.839 16 C -0.246 4.246 17 C -0.063 4.063 18 C -0.117 4.117 19 C -0.071 4.071 20 H 0.077 0.923 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.264 0.736 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.615 -14.982 -1.943 16.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.032 3.968 3 N -0.232 5.232 4 C 0.103 3.897 5 C 0.042 3.958 6 C -0.544 4.544 7 H 0.071 0.929 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.728 3.272 11 H -0.202 1.202 12 H -0.210 1.210 13 H -0.202 1.202 14 N -0.231 5.231 15 C 0.013 3.987 16 C -0.251 4.251 17 C -0.101 4.101 18 C -0.155 4.155 19 C -0.109 4.109 20 H 0.096 0.904 21 H 0.091 0.909 22 H 0.098 0.902 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.036 -13.903 -1.994 15.709 hybrid contribution -0.196 -0.372 1.011 1.095 sum -7.232 -14.275 -0.983 16.033 Atomic orbital electron populations 1.20682 0.88957 1.03312 1.02874 1.21257 0.97028 0.87484 0.91002 1.68376 1.10658 1.28405 1.15777 1.24366 0.85715 0.95105 0.84519 1.18227 0.94833 0.83746 0.98953 1.20745 1.37612 1.05496 0.90538 0.92936 1.24926 0.95380 0.96203 0.97530 1.69936 1.39061 1.13398 1.30759 0.86516 0.78419 0.77812 0.84454 1.20181 1.21031 1.20172 1.67742 1.42331 0.97535 1.15456 1.22158 0.91301 0.94383 0.90845 1.21755 0.97014 0.96655 1.09664 1.20715 0.98014 0.89700 1.01662 1.22314 0.93787 0.97907 1.01538 1.20967 0.98647 0.88176 1.03132 0.90408 0.90946 0.90182 0.93395 0.93354 0.92630 0.90896 0.90576 0.90855 0.90160 0.89640 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 10.11 36.01 0.36 -0.99 16 2 C 0.18 3.33 6.82 -82.25 -0.56 2.77 16 3 N -0.52 -11.99 10.28 -7.00 -0.07 -12.06 16 4 C 0.37 9.21 6.83 -157.21 -1.07 8.14 16 5 C 0.08 2.27 5.41 -29.04 -0.16 2.11 16 6 C -0.50 -15.01 9.09 -34.44 -0.31 -15.32 16 7 H 0.05 1.58 7.74 -52.49 -0.41 1.17 16 8 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 10 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 N -0.52 -12.10 10.34 -6.86 -0.07 -12.17 16 15 C 0.16 3.02 7.37 -82.03 -0.60 2.42 16 16 C -0.25 -4.13 6.04 -104.26 -0.63 -4.76 16 17 C -0.06 -0.71 6.28 -26.97 -0.17 -0.88 16 18 C -0.12 -1.17 7.08 -25.26 -0.18 -1.35 16 19 C -0.07 -0.94 6.76 -26.92 -0.18 -1.13 16 20 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 21 H 0.07 0.77 7.80 -51.93 -0.40 0.37 16 22 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 23 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 24 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 267.29 15.07 4.03 4.03 Total: -1.00 -33.23 267.29 -8.18 -41.41 By element: Atomic # 1 Polarization: -0.78 SS G_CDS: -4.17 Total: -4.95 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -3.60 Total: -7.30 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: 0.59 Total: -50.45 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.23 -8.18 -41.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260811741.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.949 kcal (2) G-P(sol) polarization free energy of solvation -33.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds