Wall clock time and date at job start Mon Mar 30 2020 02:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32375 * 120.48412 * 2 1 4 4 C 1.31782 * 120.77340 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.09709 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46656 * 90.00365 * 5 4 3 7 7 H 1.07995 * 120.00186 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99812 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99970 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00219 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46932 * 60.00018 * 10 8 6 12 12 H 1.48499 * 109.47362 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47044 * 300.00581 * 10 8 6 14 14 N 1.31792 * 121.81255 * 0.02562 * 4 3 2 15 15 C 1.32426 * 120.79986 * 359.97438 * 14 4 3 16 16 C 1.38454 * 118.99671 * 359.75930 * 15 14 4 17 17 C 1.51054 * 109.87269 * 179.83170 * 16 15 14 18 18 C 1.54410 * 105.21099 * 343.32860 * 17 16 15 19 19 C 1.51169 * 131.30124 * 180.02562 * 15 14 4 20 20 H 1.09001 * 109.46953 * 89.99938 * 1 2 3 21 21 H 1.09000 * 109.47318 * 209.99536 * 1 2 3 22 22 H 1.09000 * 109.47161 * 330.00166 * 1 2 3 23 23 H 1.08993 * 109.47295 * 210.00561 * 5 4 3 24 24 H 1.09000 * 109.46904 * 330.00880 * 5 4 3 25 25 H 0.96996 * 119.99842 * 179.97438 * 9 8 6 26 26 H 1.08997 * 110.44378 * 224.30010 * 17 16 15 27 27 H 1.09005 * 110.19014 * 102.22400 * 17 16 15 28 28 H 1.08998 * 110.81141 * 267.68667 * 18 17 16 29 29 H 1.09003 * 110.97847 * 144.23963 * 18 17 16 30 30 H 1.08999 * 110.29988 * 315.96271 * 19 15 14 31 31 H 1.08996 * 110.30307 * 78.01506 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1786 1.1408 0.0000 4 6 3.4964 1.1474 0.0005 5 6 4.2226 2.4679 0.0011 6 6 4.4641 2.9076 1.4221 7 1 4.1260 2.2922 2.2427 8 6 5.1177 4.0951 1.6746 9 7 5.5299 4.8442 0.6754 10 14 5.4165 4.6406 3.4360 11 1 6.2394 3.6221 4.1368 12 1 6.1322 5.9417 3.4367 13 1 4.1151 4.7916 4.1350 14 7 4.1968 0.0310 0.0005 15 6 3.5935 -1.1479 0.0005 16 6 2.2098 -1.1938 0.0056 17 6 1.7436 -2.6306 0.0005 18 6 2.9747 -3.4543 -0.4357 19 6 4.1500 -2.5534 0.0011 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 5.1776 2.3576 -0.5125 24 1 3.6179 3.2152 -0.5127 25 1 5.9894 5.6798 0.8530 26 1 0.9281 -2.7637 -0.7104 27 1 1.4253 -2.9264 1.0002 28 1 2.9798 -3.6007 -1.5158 29 1 3.0071 -4.4122 0.0835 30 1 4.9728 -2.6346 -0.7092 31 1 4.4862 -2.8267 1.0012 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260811741.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:28 Heat of formation + Delta-G solvation = 4.570872 kcal Electronic energy + Delta-G solvation = -14141.110985 eV Core-core repulsion = 11806.704563 eV Total energy + Delta-G solvation = -2334.406423 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.30955 -37.98157 -35.74074 -35.01104 -32.36692 -30.58186 -29.03706 -28.27500 -25.71231 -23.34872 -22.31340 -21.36805 -18.87060 -18.68799 -16.96178 -16.73921 -15.96872 -15.37973 -15.27210 -14.50118 -14.28973 -14.03024 -13.88649 -13.52149 -13.43850 -13.24337 -13.11479 -12.66435 -12.61256 -12.19819 -12.07021 -12.01424 -11.59655 -11.36526 -11.17202 -10.67960 -10.02393 -9.73661 -8.28655 -6.41637 0.03760 0.23977 1.34864 1.39501 1.47923 2.34210 2.83519 2.90139 3.03138 3.21977 3.52597 3.67769 3.92345 4.17890 4.24281 4.51850 4.61406 4.70489 4.75374 4.82117 4.86009 4.96006 5.00711 5.11767 5.15004 5.19630 5.34004 5.36034 5.59362 5.65020 6.00539 6.28148 6.62873 7.24752 7.37766 8.82977 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.038790 B = 0.007361 C = 0.006879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.664007 B = 3802.790512 C = 4069.658151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.157 3.843 3 N -0.550 5.550 4 C 0.335 3.665 5 C 0.093 3.907 6 C -0.529 4.529 7 H 0.041 0.959 8 C 0.010 3.990 9 N -0.925 5.925 10 Si 0.974 3.026 11 H -0.269 1.269 12 H -0.270 1.270 13 H -0.268 1.268 14 N -0.552 5.552 15 C 0.132 3.868 16 C -0.229 4.229 17 C -0.060 4.060 18 C -0.104 4.104 19 C -0.072 4.072 20 H 0.098 0.902 21 H 0.109 0.891 22 H 0.070 0.930 23 H 0.019 0.981 24 H 0.021 0.979 25 H 0.271 0.729 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.118 0.882 30 H 0.088 0.912 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.162 -17.916 -0.883 20.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.012 3.988 3 N -0.265 5.265 4 C 0.069 3.931 5 C 0.054 3.946 6 C -0.568 4.568 7 H 0.060 0.940 8 C -0.189 4.189 9 N -0.563 5.563 10 Si 0.797 3.203 11 H -0.194 1.194 12 H -0.194 1.194 13 H -0.193 1.193 14 N -0.268 5.268 15 C -0.015 4.015 16 C -0.233 4.233 17 C -0.098 4.098 18 C -0.141 4.141 19 C -0.110 4.110 20 H 0.117 0.883 21 H 0.128 0.872 22 H 0.089 0.911 23 H 0.037 0.963 24 H 0.039 0.961 25 H 0.079 0.921 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.102 0.898 29 H 0.136 0.864 30 H 0.107 0.893 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.602 -16.870 -0.946 18.960 hybrid contribution 0.231 0.421 0.619 0.783 sum -8.371 -16.449 -0.327 18.460 Atomic orbital electron populations 1.20827 0.85067 1.04689 1.04588 1.22156 0.99451 0.86977 0.90251 1.68247 1.09900 1.31385 1.17011 1.23530 0.86710 0.94553 0.88298 1.17792 0.93380 0.85612 0.97795 1.20954 1.38571 1.06202 0.91037 0.94031 1.25906 0.94540 0.95870 1.02575 1.70053 1.39226 1.13818 1.33249 0.85383 0.78703 0.77876 0.78352 1.19399 1.19423 1.19318 1.67585 1.43481 0.98864 1.16849 1.23222 0.93243 0.94894 0.90101 1.22474 0.96168 0.99100 1.05518 1.20955 0.99485 0.85386 1.03938 1.22385 0.90760 0.98259 1.02723 1.21238 1.00378 0.85269 1.04118 0.88316 0.87206 0.91117 0.96303 0.96130 0.92054 0.87975 0.88227 0.89781 0.86415 0.89341 0.88033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.29 10.11 71.24 0.72 -1.57 16 2 C 0.16 5.71 6.82 42.55 0.29 6.00 16 3 N -0.55 -26.57 10.28 -176.06 -1.81 -28.38 16 4 C 0.33 17.90 6.83 138.75 0.95 18.84 16 5 C 0.09 5.64 5.41 29.10 0.16 5.80 16 6 C -0.53 -33.21 9.09 25.60 0.23 -32.98 16 7 H 0.04 2.62 7.74 -2.91 -0.02 2.60 16 8 C 0.01 0.61 5.46 84.65 0.46 1.07 16 9 N -0.92 -57.91 13.29 21.45 0.28 -57.63 16 10 Si 0.97 46.52 29.54 68.60 2.03 48.55 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 14 N -0.55 -27.11 10.34 -175.62 -1.82 -28.93 16 15 C 0.13 4.88 7.37 42.67 0.31 5.20 16 16 C -0.23 -7.18 6.04 -19.63 -0.12 -7.30 16 17 C -0.06 -1.05 6.28 30.44 0.19 -0.86 16 18 C -0.10 -1.52 7.08 31.55 0.22 -1.30 16 19 C -0.07 -1.73 6.76 30.47 0.21 -1.52 16 20 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 21 H 0.11 1.82 7.80 -2.39 -0.02 1.81 16 22 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 26 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -78.76 267.29 3.43 -75.34 By element: Atomic # 1 Polarization: -1.45 SS G_CDS: 1.11 Total: -0.34 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 3.63 Total: -8.61 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -3.34 Total: -114.93 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -78.76 3.43 -75.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260811741.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.906 kcal (2) G-P(sol) polarization free energy of solvation -78.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds