Wall clock time and date at job start Mon Mar 30 2020 02:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86802 * 119.99683 * 2 1 4 4 H 1.48497 * 109.47324 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.46654 * 120.00155 * 3 2 1 6 6 H 1.48495 * 109.47243 * 240.00321 * 3 2 1 7 7 C 1.40111 * 120.00463 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 2.49940 * 7 2 1 9 9 C 1.41552 * 120.00398 * 182.49672 * 7 2 1 10 10 C 1.40931 * 120.65904 * 186.92576 * 9 7 2 11 11 C 1.38285 * 118.15051 * 180.02562 * 10 9 7 12 12 C 1.50705 * 120.37306 * 180.02562 * 11 10 9 13 13 C 1.54266 * 110.03146 * 32.90541 * 12 11 10 14 14 C 1.54966 * 104.15764 * 217.13925 * 13 12 11 15 15 C 1.54884 * 102.78107 * 37.88674 * 14 13 12 16 16 C 1.53881 * 110.03062 * 275.68856 * 12 11 10 17 17 N 1.32463 * 119.25421 * 359.97438 * 11 10 9 18 18 C 1.32010 * 121.29411 * 359.97438 * 17 11 10 19 19 N 1.31412 * 122.04208 * 359.71697 * 18 17 11 20 20 H 0.97005 * 120.00179 * 174.82410 * 1 2 3 21 21 H 1.07999 * 120.92609 * 359.97421 * 10 9 7 22 22 H 1.09000 * 110.01883 * 154.29992 * 12 11 10 23 23 H 1.09001 * 110.48701 * 335.78391 * 13 12 11 24 24 H 1.08995 * 110.48549 * 98.42695 * 13 12 11 25 25 H 1.08999 * 110.71890 * 279.56811 * 14 13 12 26 26 H 1.09006 * 110.76508 * 156.22808 * 14 13 12 27 27 H 1.09000 * 110.49118 * 203.40122 * 15 14 13 28 28 H 1.09001 * 110.59668 * 80.81668 * 15 14 13 29 29 H 1.08996 * 110.03296 * 238.56678 * 16 12 11 30 30 H 1.08999 * 110.03173 * 359.94822 * 16 12 11 31 31 H 1.08001 * 118.98191 * 180.02562 * 18 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 1.2756 2.7465 0.0006 5 1 3.0944 1.6964 1.2126 6 1 3.0943 1.6966 -1.2125 7 6 2.0073 -1.2133 -0.0005 8 1 1.4681 -2.1482 -0.0417 9 6 3.4218 -1.2139 0.0529 10 6 4.1460 -2.4142 -0.0928 11 6 5.5262 -2.3549 -0.0315 12 6 6.3501 -3.6078 -0.1816 13 6 5.6509 -4.5876 -1.1464 14 6 5.9331 -5.9847 -0.5382 15 6 5.8296 -5.7226 0.9848 16 6 6.4641 -4.3291 1.1729 17 7 6.1160 -1.1843 0.1595 18 6 5.4122 -0.0753 0.2918 19 7 4.0993 -0.0720 0.2360 20 1 -0.4851 -0.8366 -0.0758 21 1 3.6371 -3.3542 -0.2472 22 1 7.3428 -3.3589 -0.5567 23 1 4.5786 -4.3941 -1.1759 24 1 6.0808 -4.5116 -2.1451 25 1 6.9334 -6.3263 -0.8043 26 1 5.1800 -6.7049 -0.8583 27 1 6.3895 -6.4749 1.5404 28 1 4.7868 -5.7129 1.3023 29 1 7.5121 -4.4310 1.4546 30 1 5.9243 -3.7724 1.9389 31 1 5.9317 0.8589 0.4457 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260864689.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:12 Heat of formation + Delta-G solvation = 2.489312 kcal Electronic energy + Delta-G solvation = -14411.670761 eV Core-core repulsion = 12077.174076 eV Total energy + Delta-G solvation = -2334.496686 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.64823 -37.56360 -34.22577 -32.25777 -31.08034 -28.49101 -28.04908 -26.00174 -23.09033 -21.50851 -20.36165 -19.62001 -18.25265 -16.37267 -15.65497 -15.27257 -14.54787 -14.31887 -13.56809 -13.38654 -13.11275 -12.94304 -12.33271 -12.03400 -11.44529 -11.10636 -10.93839 -10.87216 -10.81681 -10.52562 -10.26441 -10.17558 -9.81382 -9.45939 -9.04117 -8.95321 -8.25472 -7.69735 -7.24944 -5.05462 2.35365 2.57380 3.56840 3.65707 3.96967 4.37548 4.57978 4.81905 4.84502 4.90992 5.28028 5.44565 5.56389 5.64693 5.79299 5.81508 5.82908 5.92173 6.03996 6.10003 6.14501 6.26277 6.35701 6.48442 6.56080 6.72504 6.82196 6.97007 7.30497 7.47351 7.85963 8.12123 8.45452 8.64765 9.61957 9.87204 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.042840 B = 0.008733 C = 0.007707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.444935 B = 3205.617902 C = 3632.418909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.044 3.956 3 Si 1.154 2.846 4 H -0.330 1.330 5 H -0.277 1.277 6 H -0.292 1.292 7 C -0.461 4.461 8 H 0.084 0.916 9 C 0.261 3.739 10 C -0.305 4.305 11 C 0.176 3.824 12 C -0.036 4.036 13 C -0.124 4.124 14 C -0.123 4.123 15 C -0.124 4.124 16 C -0.108 4.108 17 N -0.619 5.619 18 C 0.320 3.680 19 N -0.609 5.609 20 H 0.285 0.715 21 H 0.114 0.886 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.991 -7.441 -0.179 10.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.179 4.179 3 Si 0.988 3.012 4 H -0.263 1.263 5 H -0.205 1.205 6 H -0.220 1.220 7 C -0.495 4.495 8 H 0.102 0.898 9 C 0.135 3.865 10 C -0.331 4.331 11 C 0.040 3.960 12 C -0.056 4.056 13 C -0.162 4.162 14 C -0.160 4.160 15 C -0.161 4.161 16 C -0.147 4.147 17 N -0.343 5.343 18 C 0.029 3.971 19 N -0.335 5.335 20 H 0.096 0.904 21 H 0.132 0.868 22 H 0.098 0.902 23 H 0.099 0.901 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 8.135 -5.140 0.014 9.623 hybrid contribution -0.411 -2.625 -0.177 2.663 sum 7.725 -7.765 -0.162 10.954 Atomic orbital electron populations 1.70627 1.08198 1.32979 1.29763 1.27902 0.95277 1.06381 0.88294 0.81856 0.70629 0.69189 0.79537 1.26295 1.20453 1.21991 1.20846 0.90104 0.96422 1.42159 0.89809 1.18846 0.94106 0.87063 0.86520 1.22120 0.94484 0.99375 1.17138 1.20842 0.91175 0.92499 0.91448 1.20548 0.98322 0.91177 0.95505 1.22632 1.01997 0.93611 0.97971 1.22489 1.01038 0.97038 0.95479 1.22363 1.00972 0.96581 0.96224 1.22086 1.00482 0.95171 0.96914 1.68034 1.41003 0.98667 1.26611 1.24047 0.87361 0.95624 0.90060 1.67304 1.09534 1.29441 1.27244 0.90406 0.86782 0.90183 0.90142 0.91884 0.91794 0.91809 0.92061 0.91625 0.91912 0.91782 0.81763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.26 13.64 55.55 0.76 -20.50 16 2 C 0.04 1.19 5.52 -17.34 -0.10 1.09 16 3 Si 1.15 28.15 25.58 -169.99 -4.35 23.80 16 4 H -0.33 -7.90 7.11 56.52 0.40 -7.50 16 5 H -0.28 -6.74 6.70 56.52 0.38 -6.36 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.46 -12.43 9.63 -37.62 -0.36 -12.79 16 8 H 0.08 2.24 8.05 -52.49 -0.42 1.81 16 9 C 0.26 6.82 6.41 -84.62 -0.54 6.28 16 10 C -0.31 -7.13 8.88 -38.55 -0.34 -7.48 16 11 C 0.18 3.81 5.62 -82.30 -0.46 3.35 16 12 C -0.04 -0.62 3.32 -90.65 -0.30 -0.92 16 13 C -0.12 -1.86 6.24 -25.03 -0.16 -2.01 16 14 C -0.12 -1.50 6.91 -24.70 -0.17 -1.67 16 15 C -0.12 -1.59 6.83 -25.08 -0.17 -1.76 16 16 C -0.11 -1.64 6.45 -25.61 -0.17 -1.80 16 17 N -0.62 -14.07 10.36 -10.88 -0.11 -14.19 16 18 C 0.32 7.37 12.27 -92.30 -1.13 6.24 16 19 N -0.61 -15.62 4.78 -12.52 -0.06 -15.68 16 20 H 0.28 7.25 8.72 -40.82 -0.36 6.89 16 21 H 0.11 2.49 6.21 -52.49 -0.33 2.16 16 22 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 23 H 0.08 1.33 5.41 -51.93 -0.28 1.05 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.06 1.10 7.67 -51.93 -0.40 0.70 16 31 H 0.17 3.18 8.06 -52.49 -0.42 2.76 16 LS Contribution 254.46 15.07 3.83 3.83 Total: -1.00 -28.59 254.46 -7.81 -36.40 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -3.98 Total: -2.19 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -3.90 Total: -11.48 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: 0.59 Total: -50.36 kcal Atomic # 14 Polarization: 28.15 SS G_CDS: -4.35 Total: 23.80 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -28.59 -7.81 -36.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260864689.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.889 kcal (2) G-P(sol) polarization free energy of solvation -28.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds