Wall clock time and date at job start Mon Mar 30 2020 02:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86802 * 119.99683 * 2 1 4 4 H 1.48497 * 109.47324 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.46654 * 120.00155 * 3 2 1 6 6 H 1.48495 * 109.47243 * 240.00321 * 3 2 1 7 7 C 1.40111 * 120.00463 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 2.49940 * 7 2 1 9 9 C 1.41552 * 120.00398 * 182.49672 * 7 2 1 10 10 C 1.40931 * 120.65904 * 186.92576 * 9 7 2 11 11 C 1.38285 * 118.15051 * 180.02562 * 10 9 7 12 12 C 1.50705 * 120.37306 * 180.02562 * 11 10 9 13 13 C 1.54266 * 110.03146 * 32.90541 * 12 11 10 14 14 C 1.54966 * 104.15764 * 217.13925 * 13 12 11 15 15 C 1.54884 * 102.78107 * 37.88674 * 14 13 12 16 16 C 1.53881 * 110.03062 * 275.68856 * 12 11 10 17 17 N 1.32463 * 119.25421 * 359.97438 * 11 10 9 18 18 C 1.32010 * 121.29411 * 359.97438 * 17 11 10 19 19 N 1.31412 * 122.04208 * 359.71697 * 18 17 11 20 20 H 0.97005 * 120.00179 * 174.82410 * 1 2 3 21 21 H 1.07999 * 120.92609 * 359.97421 * 10 9 7 22 22 H 1.09000 * 110.01883 * 154.29992 * 12 11 10 23 23 H 1.09001 * 110.48701 * 335.78391 * 13 12 11 24 24 H 1.08995 * 110.48549 * 98.42695 * 13 12 11 25 25 H 1.08999 * 110.71890 * 279.56811 * 14 13 12 26 26 H 1.09006 * 110.76508 * 156.22808 * 14 13 12 27 27 H 1.09000 * 110.49118 * 203.40122 * 15 14 13 28 28 H 1.09001 * 110.59668 * 80.81668 * 15 14 13 29 29 H 1.08996 * 110.03296 * 238.56678 * 16 12 11 30 30 H 1.08999 * 110.03173 * 359.94822 * 16 12 11 31 31 H 1.08001 * 118.98191 * 180.02562 * 18 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 1.2756 2.7465 0.0006 5 1 3.0944 1.6964 1.2126 6 1 3.0943 1.6966 -1.2125 7 6 2.0073 -1.2133 -0.0005 8 1 1.4681 -2.1482 -0.0417 9 6 3.4218 -1.2139 0.0529 10 6 4.1460 -2.4142 -0.0928 11 6 5.5262 -2.3549 -0.0315 12 6 6.3501 -3.6078 -0.1816 13 6 5.6509 -4.5876 -1.1464 14 6 5.9331 -5.9847 -0.5382 15 6 5.8296 -5.7226 0.9848 16 6 6.4641 -4.3291 1.1729 17 7 6.1160 -1.1843 0.1595 18 6 5.4122 -0.0753 0.2918 19 7 4.0993 -0.0720 0.2360 20 1 -0.4851 -0.8366 -0.0758 21 1 3.6371 -3.3542 -0.2472 22 1 7.3428 -3.3589 -0.5567 23 1 4.5786 -4.3941 -1.1759 24 1 6.0808 -4.5116 -2.1451 25 1 6.9334 -6.3263 -0.8043 26 1 5.1800 -6.7049 -0.8583 27 1 6.3895 -6.4749 1.5404 28 1 4.7868 -5.7129 1.3023 29 1 7.5121 -4.4310 1.4546 30 1 5.9243 -3.7724 1.9389 31 1 5.9317 0.8589 0.4457 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260864689.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:11 Heat of formation + Delta-G solvation = -12.580507 kcal Electronic energy + Delta-G solvation = -14412.324238 eV Core-core repulsion = 12077.174076 eV Total energy + Delta-G solvation = -2335.150162 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.42449 -38.89548 -36.18623 -34.07476 -32.86727 -29.63738 -29.53725 -27.86896 -24.82888 -23.30158 -21.48195 -21.18705 -20.06389 -18.07326 -17.40309 -16.57807 -16.16337 -15.95259 -15.27388 -15.17239 -14.90128 -14.21042 -14.13094 -13.77551 -13.11068 -12.60670 -12.40784 -12.02654 -11.98326 -11.91422 -11.84999 -11.59514 -11.44035 -11.40559 -10.91835 -10.79525 -10.11604 -9.70278 -9.21587 -7.09057 0.52214 0.62277 1.59154 1.71015 2.02518 2.43169 2.62935 3.37175 3.44791 3.65771 3.79612 3.82921 4.07888 4.33385 4.49142 4.53813 4.61331 4.64620 4.75979 4.85643 4.92726 4.99473 5.06052 5.14682 5.21979 5.26302 5.31857 5.40491 5.50309 5.62932 5.82747 6.18066 6.46183 6.73348 7.71207 7.84672 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.042840 B = 0.008733 C = 0.007707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.444935 B = 3205.617902 C = 3632.418909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.019 3.981 3 Si 1.186 2.814 4 H -0.324 1.324 5 H -0.276 1.276 6 H -0.295 1.295 7 C -0.492 4.492 8 H 0.072 0.928 9 C 0.247 3.753 10 C -0.318 4.318 11 C 0.182 3.818 12 C -0.038 4.038 13 C -0.125 4.125 14 C -0.113 4.113 15 C -0.121 4.121 16 C -0.106 4.106 17 N -0.617 5.617 18 C 0.310 3.690 19 N -0.628 5.628 20 H 0.285 0.715 21 H 0.123 0.877 22 H 0.089 0.911 23 H 0.059 0.941 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.037 0.963 31 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.211 -8.526 -0.242 13.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.200 4.200 3 Si 1.017 2.983 4 H -0.257 1.257 5 H -0.204 1.204 6 H -0.224 1.224 7 C -0.527 4.527 8 H 0.090 0.910 9 C 0.120 3.880 10 C -0.343 4.343 11 C 0.045 3.955 12 C -0.057 4.057 13 C -0.163 4.163 14 C -0.150 4.150 15 C -0.159 4.159 16 C -0.144 4.144 17 N -0.339 5.339 18 C 0.021 3.979 19 N -0.355 5.355 20 H 0.096 0.904 21 H 0.141 0.859 22 H 0.107 0.893 23 H 0.078 0.922 24 H 0.092 0.908 25 H 0.104 0.896 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 10.354 -6.234 -0.046 12.086 hybrid contribution -0.929 -2.353 -0.154 2.534 sum 9.425 -8.587 -0.199 12.752 Atomic orbital electron populations 1.70634 1.08375 1.33043 1.31528 1.28572 0.95571 1.07887 0.87941 0.81438 0.69967 0.67682 0.79175 1.25724 1.20381 1.22379 1.20849 0.90877 0.96182 1.44774 0.91003 1.19072 0.94177 0.88429 0.86324 1.22279 0.95451 0.98983 1.17625 1.21585 0.91158 0.93851 0.88946 1.20743 0.97982 0.89607 0.97418 1.22629 1.00429 0.94938 0.98320 1.22476 1.02762 0.95389 0.94389 1.22368 1.00492 0.95775 0.97229 1.22086 1.01678 0.95873 0.94777 1.68195 1.40940 0.99022 1.25790 1.24814 0.86843 0.97238 0.89035 1.67316 1.10767 1.29465 1.27910 0.90433 0.85908 0.89314 0.92245 0.90812 0.89582 0.90490 0.89407 0.92830 0.89781 0.94448 0.78194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.40 13.64 21.85 0.30 -44.10 16 2 C 0.02 1.06 5.52 85.32 0.47 1.53 16 3 Si 1.19 57.23 25.58 68.60 1.75 58.99 16 4 H -0.32 -15.18 7.11 99.48 0.71 -14.47 16 5 H -0.28 -13.17 6.70 99.48 0.67 -12.51 16 6 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 7 C -0.49 -27.26 9.63 23.54 0.23 -27.03 16 8 H 0.07 4.00 8.05 -2.91 -0.02 3.98 16 9 C 0.25 13.03 6.41 40.28 0.26 13.29 16 10 C -0.32 -14.85 8.88 22.94 0.20 -14.65 16 11 C 0.18 7.60 5.62 42.48 0.24 7.84 16 12 C -0.04 -1.21 3.32 -10.81 -0.04 -1.25 16 13 C -0.13 -3.44 6.24 31.70 0.20 -3.24 16 14 C -0.11 -2.34 6.91 31.91 0.22 -2.12 16 15 C -0.12 -2.73 6.83 31.67 0.22 -2.51 16 16 C -0.11 -2.93 6.45 31.32 0.20 -2.72 16 17 N -0.62 -26.87 10.36 -188.34 -1.95 -28.82 16 18 C 0.31 13.79 12.27 180.93 2.22 16.01 16 19 N -0.63 -31.82 4.78 -193.52 -0.92 -32.75 16 20 H 0.28 14.94 8.72 -92.70 -0.81 14.13 16 21 H 0.12 5.41 6.21 -2.91 -0.02 5.39 16 22 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 23 H 0.06 1.89 5.41 -2.39 -0.01 1.88 16 24 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 26 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.04 1.22 7.67 -2.39 -0.02 1.20 16 31 H 0.20 7.20 8.06 -2.91 -0.02 7.18 16 Total: -1.00 -60.82 254.46 4.64 -56.19 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 1.04 Total: 5.34 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 4.42 Total: -14.85 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -2.58 Total: -105.67 kcal Atomic # 14 Polarization: 57.23 SS G_CDS: 1.75 Total: 58.99 kcal Total: -60.82 4.64 -56.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260864689.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.609 kcal (2) G-P(sol) polarization free energy of solvation -60.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds