Wall clock time and date at job start Mon Mar 30 2020 02:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.86155 * 299.99850 * 9 7 2 11 11 C 1.51077 * 109.86934 * 60.97449 * 9 7 2 12 12 C 1.34503 * 127.94672 * 286.85868 * 11 9 7 13 13 N 1.35158 * 107.62331 * 179.86458 * 12 11 9 14 14 H 0.97004 * 126.00873 * 180.02562 * 13 12 11 15 15 N 1.40230 * 107.98369 * 0.02562 * 13 12 11 16 16 C 1.30458 * 108.20528 * 0.02562 * 15 13 12 17 17 C 1.50859 * 127.33273 * 179.86719 * 16 15 13 18 18 C 1.53283 * 109.05778 * 162.06304 * 17 16 15 19 19 C 1.53114 * 109.45421 * 47.41239 * 18 17 16 20 20 C 1.52779 * 117.82311 * 79.16221 * 19 18 17 21 21 C 1.52752 * 117.87270 * 148.17764 * 19 18 17 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.07997 * 126.16750 * 359.84086 * 12 11 9 24 24 H 1.09003 * 109.53759 * 42.18957 * 17 16 15 25 25 H 1.09003 * 109.54001 * 281.93779 * 17 16 15 26 26 H 1.09006 * 109.47297 * 287.42477 * 18 17 16 27 27 H 1.08997 * 109.47733 * 167.40931 * 18 17 16 28 28 H 1.09001 * 117.50421 * 215.31384 * 20 19 18 29 29 H 1.09000 * 117.50668 * 0.36931 * 20 19 18 30 30 H 1.09005 * 117.50237 * 359.70586 * 21 19 18 31 31 H 1.08993 * 117.50503 * 144.73395 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6223 -2.5638 0.8876 11 6 0.3968 -2.5988 -1.2426 12 6 -0.7386 -1.9338 -1.5211 13 7 -1.1581 -2.3337 -2.7421 14 1 -1.9526 -2.0213 -3.2027 15 7 -0.2429 -3.2795 -3.2260 16 6 0.6897 -3.4407 -2.3282 17 6 1.8844 -4.3588 -2.4046 18 6 2.9261 -3.9116 -1.3729 19 6 2.2394 -3.6735 -0.0252 20 6 1.9104 -4.8939 0.8330 21 6 3.0427 -3.9500 1.2443 22 1 -0.4850 0.8401 0.0004 23 1 -1.2268 -1.2113 -0.8838 24 1 2.3173 -4.3113 -3.4039 25 1 1.5731 -5.3809 -2.1890 26 1 3.3970 -2.9877 -1.7089 27 1 3.6843 -4.6868 -1.2624 28 1 0.9921 -4.8641 1.4194 29 1 2.1878 -5.8732 0.4429 30 1 4.0652 -4.3085 1.1249 31 1 2.8697 -3.2992 2.1012 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260898886.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:21 Heat of formation + Delta-G solvation = 91.603398 kcal Electronic energy + Delta-G solvation = -15043.618629 eV Core-core repulsion = 12712.986220 eV Total energy + Delta-G solvation = -2330.632409 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.15359 -37.52889 -33.13542 -32.62581 -29.69923 -28.99936 -26.76127 -23.79611 -22.88541 -21.51322 -19.70816 -19.10907 -17.32318 -16.48405 -15.76611 -14.72290 -14.32528 -13.95908 -13.73113 -12.74365 -12.57555 -12.38162 -11.66886 -11.48734 -11.32123 -11.10049 -10.84498 -10.71533 -10.65462 -10.40768 -9.87982 -9.59569 -9.28573 -8.99751 -8.54644 -8.39673 -8.14027 -6.94658 -5.98006 -4.07666 3.18160 3.30977 3.34427 3.38429 4.03877 4.21837 4.41531 4.73194 5.27705 5.40735 5.66930 5.71913 5.85191 5.92577 6.11222 6.33926 6.35100 6.40565 6.53980 6.64444 6.75502 6.93092 6.98187 7.00789 7.11010 7.31288 7.76152 7.86130 7.92545 8.04626 8.39933 8.60232 8.92252 8.98769 9.56885 11.00552 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.023221 B = 0.015052 C = 0.010786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.525339 B = 1859.776704 C = 2595.399254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.289 1.289 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.482 4.482 8 H 0.059 0.941 9 C 0.150 3.850 10 H 0.033 0.967 11 C -0.188 4.188 12 C 0.076 3.924 13 N -0.513 5.513 14 H 0.422 0.578 15 N -0.340 5.340 16 C 0.064 3.936 17 C -0.025 4.025 18 C -0.072 4.072 19 C -0.089 4.089 20 C -0.191 4.191 21 C -0.174 4.174 22 H 0.259 0.741 23 H 0.208 0.792 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.180 -5.158 -0.768 5.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.140 4.140 3 Si 0.724 3.276 4 H -0.214 1.214 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.520 4.520 8 H 0.077 0.923 9 C 0.131 3.869 10 H 0.051 0.949 11 C -0.199 4.199 12 C -0.067 4.067 13 N -0.222 5.222 14 H 0.262 0.738 15 N -0.164 5.164 16 C -0.103 4.103 17 C -0.064 4.064 18 C -0.110 4.110 19 C -0.090 4.090 20 C -0.228 4.228 21 C -0.211 4.211 22 H 0.069 0.931 23 H 0.223 0.777 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.648 -5.365 -1.865 5.716 hybrid contribution 0.274 1.512 0.410 1.591 sum 0.921 -3.852 -1.454 4.220 Atomic orbital electron populations 1.69467 1.06082 1.25938 1.52124 1.24858 0.94743 0.99005 0.95384 0.86592 0.79559 0.82910 0.78534 1.21446 1.20275 1.20515 1.21151 0.93003 0.90010 1.47821 0.92304 1.16894 0.89516 0.89938 0.90586 0.94937 1.20375 0.98092 1.01312 1.00140 1.23695 0.98005 0.98249 0.86777 1.46425 1.23148 1.35890 1.16702 0.73774 1.76708 1.04022 1.11964 1.23676 1.22198 0.95777 0.98809 0.93506 1.19800 0.91457 0.96225 0.98958 1.21006 0.95842 1.00747 0.93388 1.21600 1.00519 0.96657 0.90181 1.22933 0.99747 0.94496 1.05621 1.22795 0.94947 1.02985 1.00372 0.93070 0.77666 0.91604 0.91425 0.90882 0.92868 0.89682 0.90332 0.90342 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.47 9.13 55.43 0.51 -22.96 16 2 C 0.06 1.54 5.30 -17.82 -0.09 1.45 16 3 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.48 -12.62 8.28 -34.44 -0.29 -12.90 16 8 H 0.06 1.54 7.76 -52.49 -0.41 1.13 16 9 C 0.15 3.64 2.24 -92.48 -0.21 3.44 16 10 H 0.03 0.86 8.04 -51.93 -0.42 0.44 16 11 C -0.19 -4.58 5.06 -104.92 -0.53 -5.11 16 12 C 0.08 1.78 10.41 -17.41 -0.18 1.60 16 13 N -0.51 -10.80 7.37 30.33 0.22 -10.57 16 14 H 0.42 7.18 8.96 -182.49 -1.64 5.54 16 15 N -0.34 -7.69 12.69 33.77 0.43 -7.26 16 16 C 0.06 1.46 7.06 -82.26 -0.58 0.88 16 17 C -0.03 -0.47 6.30 -27.66 -0.17 -0.65 16 18 C -0.07 -1.34 5.55 -26.53 -0.15 -1.49 16 19 C -0.09 -1.82 1.22 -154.43 -0.19 -2.00 16 20 C -0.19 -3.39 9.93 -26.82 -0.27 -3.66 16 21 C -0.17 -3.15 9.88 -26.84 -0.27 -3.42 16 22 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 23 H 0.21 4.94 5.59 -52.49 -0.29 4.64 16 24 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.07 1.47 7.99 -51.93 -0.41 1.06 16 27 H 0.05 0.83 8.09 -51.93 -0.42 0.41 16 28 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 254.86 15.07 3.84 3.84 Total: -1.00 -28.32 254.86 -8.20 -36.52 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -5.26 Total: 6.49 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -2.92 Total: -21.86 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 1.16 Total: -40.79 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.32 -8.20 -36.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260898886.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.122 kcal (2) G-P(sol) polarization free energy of solvation -28.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds