Wall clock time and date at job start Mon Mar 30 2020 02:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.86155 * 299.99850 * 9 7 2 11 11 C 1.51077 * 109.86934 * 60.97449 * 9 7 2 12 12 C 1.34503 * 127.94672 * 286.85868 * 11 9 7 13 13 N 1.35158 * 107.62331 * 179.86458 * 12 11 9 14 14 H 0.97004 * 126.00873 * 180.02562 * 13 12 11 15 15 N 1.40230 * 107.98369 * 0.02562 * 13 12 11 16 16 C 1.30458 * 108.20528 * 0.02562 * 15 13 12 17 17 C 1.50859 * 127.33273 * 179.86719 * 16 15 13 18 18 C 1.53283 * 109.05778 * 162.06304 * 17 16 15 19 19 C 1.53114 * 109.45421 * 47.41239 * 18 17 16 20 20 C 1.52779 * 117.82311 * 79.16221 * 19 18 17 21 21 C 1.52752 * 117.87270 * 148.17764 * 19 18 17 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.07997 * 126.16750 * 359.84086 * 12 11 9 24 24 H 1.09003 * 109.53759 * 42.18957 * 17 16 15 25 25 H 1.09003 * 109.54001 * 281.93779 * 17 16 15 26 26 H 1.09006 * 109.47297 * 287.42477 * 18 17 16 27 27 H 1.08997 * 109.47733 * 167.40931 * 18 17 16 28 28 H 1.09001 * 117.50421 * 215.31384 * 20 19 18 29 29 H 1.09000 * 117.50668 * 0.36931 * 20 19 18 30 30 H 1.09005 * 117.50237 * 359.70586 * 21 19 18 31 31 H 1.08993 * 117.50503 * 144.73395 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6223 -2.5638 0.8876 11 6 0.3968 -2.5988 -1.2426 12 6 -0.7386 -1.9338 -1.5211 13 7 -1.1581 -2.3337 -2.7421 14 1 -1.9526 -2.0213 -3.2027 15 7 -0.2429 -3.2795 -3.2260 16 6 0.6897 -3.4407 -2.3282 17 6 1.8844 -4.3588 -2.4046 18 6 2.9261 -3.9116 -1.3729 19 6 2.2394 -3.6735 -0.0252 20 6 1.9104 -4.8939 0.8330 21 6 3.0427 -3.9500 1.2443 22 1 -0.4850 0.8401 0.0004 23 1 -1.2268 -1.2113 -0.8838 24 1 2.3173 -4.3113 -3.4039 25 1 1.5731 -5.3809 -2.1890 26 1 3.3970 -2.9877 -1.7089 27 1 3.6843 -4.6868 -1.2624 28 1 0.9921 -4.8641 1.4194 29 1 2.1878 -5.8732 0.4429 30 1 4.0652 -4.3085 1.1249 31 1 2.8697 -3.2992 2.1012 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260898886.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:21 Heat of formation + Delta-G solvation = 75.592711 kcal Electronic energy + Delta-G solvation = -15044.312904 eV Core-core repulsion = 12712.986220 eV Total energy + Delta-G solvation = -2331.326685 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.88320 -39.08166 -35.05781 -34.16914 -31.54217 -30.64365 -28.61525 -25.49391 -24.58209 -22.95071 -21.48285 -20.77759 -18.98805 -18.33449 -17.55542 -16.56296 -15.90576 -15.54783 -15.38283 -14.34413 -14.24869 -14.21797 -13.41145 -13.09964 -12.98019 -12.86634 -12.68162 -12.31923 -12.12222 -12.07832 -11.68034 -11.38310 -10.96386 -10.60509 -10.33868 -10.11026 -9.85832 -8.79543 -7.94565 -6.11564 1.40813 1.44306 1.45451 1.51281 2.37213 2.40825 2.52173 3.25397 3.26448 3.88830 4.18263 4.25993 4.36464 4.45212 4.60773 4.87850 4.90902 4.97463 5.07226 5.14409 5.24024 5.29852 5.30874 5.50762 5.54272 5.59835 5.91026 5.99418 6.04752 6.27168 6.45132 6.89979 6.98947 7.19851 7.54436 9.00662 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.023221 B = 0.015052 C = 0.010786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.525339 B = 1859.776704 C = 2595.399254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.016 3.984 3 Si 0.948 3.052 4 H -0.286 1.286 5 H -0.272 1.272 6 H -0.283 1.283 7 C -0.497 4.497 8 H 0.053 0.947 9 C 0.150 3.850 10 H -0.005 1.005 11 C -0.215 4.215 12 C 0.065 3.935 13 N -0.502 5.502 14 H 0.438 0.562 15 N -0.347 5.347 16 C 0.057 3.943 17 C -0.025 4.025 18 C -0.064 4.064 19 C -0.116 4.116 20 C -0.174 4.174 21 C -0.167 4.167 22 H 0.260 0.740 23 H 0.198 0.802 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.331 -6.316 -1.331 6.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.181 4.181 3 Si 0.775 3.225 4 H -0.212 1.212 5 H -0.197 1.197 6 H -0.209 1.209 7 C -0.535 4.535 8 H 0.071 0.929 9 C 0.130 3.870 10 H 0.013 0.987 11 C -0.225 4.225 12 C -0.079 4.079 13 N -0.213 5.213 14 H 0.281 0.719 15 N -0.172 5.172 16 C -0.111 4.111 17 C -0.064 4.064 18 C -0.102 4.102 19 C -0.116 4.116 20 C -0.210 4.210 21 C -0.204 4.204 22 H 0.069 0.931 23 H 0.214 0.786 24 H 0.101 0.899 25 H 0.108 0.892 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.779 -6.522 -2.436 7.186 hybrid contribution -0.152 1.889 0.611 1.991 sum 1.627 -4.633 -1.825 5.238 Atomic orbital electron populations 1.69595 1.06737 1.26358 1.52227 1.25518 0.95601 1.01562 0.95458 0.85769 0.78485 0.79914 0.78305 1.21207 1.19739 1.20871 1.21392 0.92867 0.91330 1.47941 0.92909 1.16732 0.89910 0.91176 0.89144 0.98670 1.20589 0.98642 1.02377 1.00932 1.23587 0.98309 0.98350 0.87614 1.46379 1.23536 1.35392 1.16014 0.71853 1.76664 1.04300 1.12296 1.23897 1.22803 0.96780 0.98930 0.92543 1.19982 0.89983 0.96375 1.00035 1.20968 0.96278 1.00949 0.92014 1.21520 1.01178 0.96701 0.92165 1.22970 0.99161 0.94976 1.03936 1.22839 0.96486 1.02602 0.98507 0.93087 0.78565 0.89913 0.89155 0.93124 0.89027 0.90806 0.87219 0.87534 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.57 9.13 21.45 0.20 -48.38 16 2 C 0.02 0.84 5.30 84.66 0.45 1.29 16 3 Si 0.95 42.99 29.54 68.60 2.03 45.02 16 4 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.50 -26.43 8.28 25.60 0.21 -26.22 16 8 H 0.05 2.79 7.76 -2.91 -0.02 2.77 16 9 C 0.15 7.39 2.24 -12.00 -0.03 7.36 16 10 H 0.00 -0.26 8.04 -2.38 -0.02 -0.28 16 11 C -0.21 -10.48 5.06 -20.06 -0.10 -10.58 16 12 C 0.07 3.11 10.41 83.33 0.87 3.98 16 13 N -0.50 -20.94 7.37 -57.95 -0.43 -21.37 16 14 H 0.44 14.63 8.96 -213.23 -1.91 12.71 16 15 N -0.35 -15.29 12.69 -47.07 -0.60 -15.89 16 16 C 0.06 2.50 7.06 43.36 0.31 2.81 16 17 C -0.02 -0.86 6.30 29.99 0.19 -0.67 16 18 C -0.06 -2.22 5.55 30.73 0.17 -2.05 16 19 C -0.12 -4.53 1.22 -52.13 -0.06 -4.60 16 20 C -0.17 -5.76 9.93 30.54 0.30 -5.46 16 21 C -0.17 -5.75 9.88 30.53 0.30 -5.45 16 22 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 23 H 0.20 9.73 5.59 -2.91 -0.02 9.71 16 24 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 25 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 26 H 0.05 1.96 7.99 -2.38 -0.02 1.94 16 27 H 0.09 2.46 8.09 -2.39 -0.02 2.44 16 28 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.11 3.04 8.14 -2.38 -0.02 3.02 16 31 H 0.07 2.78 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -60.40 254.86 3.03 -57.37 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: -0.77 Total: 22.82 kcal Atomic # 6 Polarization: -42.19 SS G_CDS: 2.61 Total: -39.59 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -0.83 Total: -85.63 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -60.40 3.03 -57.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260898886.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.963 kcal (2) G-P(sol) polarization free energy of solvation -60.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds