Wall clock time and date at job start Mon Mar 30 2020 02:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 120.00093 * 2 1 4 4 H 1.48491 * 109.47144 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47153 * 300.00593 * 3 2 1 6 6 H 1.48501 * 109.46881 * 60.00277 * 3 2 1 7 7 C 1.37878 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99944 * 186.76448 * 7 2 1 9 9 C 1.50695 * 120.00025 * 6.77077 * 7 2 1 10 10 C 1.53004 * 110.26133 * 300.55945 * 9 7 2 11 11 N 1.46899 * 109.47127 * 302.42723 * 10 9 7 12 12 C 1.54401 * 110.29779 * 178.50534 * 9 7 2 13 13 C 1.54416 * 102.44903 * 267.22762 * 12 9 7 14 14 C 1.51049 * 105.15307 * 333.86208 * 13 12 9 15 15 C 1.38627 * 131.51964 * 197.06970 * 14 13 12 16 16 C 1.38211 * 119.10109 * 180.24414 * 15 14 13 17 17 N 1.31890 * 120.70477 * 359.42591 * 16 15 14 18 18 C 1.31834 * 121.78784 * 0.59692 * 17 16 15 19 19 C 1.38339 * 120.75816 * 359.68526 * 18 17 16 20 20 H 0.96991 * 120.00104 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.46916 * 62.42541 * 10 9 7 22 22 H 1.08995 * 109.47332 * 182.42539 * 10 9 7 23 23 H 1.00896 * 111.00267 * 57.02829 * 11 10 9 24 24 H 1.00903 * 111.00058 * 180.98013 * 11 10 9 25 25 H 1.08997 * 110.81527 * 148.99041 * 12 9 7 26 26 H 1.08997 * 110.81039 * 25.46559 * 12 9 7 27 27 H 1.09001 * 110.31093 * 214.93637 * 13 12 9 28 28 H 1.09010 * 110.39028 * 92.82126 * 13 12 9 29 29 H 1.08000 * 120.44882 * 359.96745 * 15 14 13 30 30 H 1.07991 * 119.64642 * 179.69217 * 16 15 14 31 31 H 1.07994 * 119.62150 * 179.70459 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0789 -1.1973 0.1096 9 6 1.2590 -2.4945 -0.1550 10 6 0.2408 -2.6590 0.9752 11 7 0.9322 -2.5983 2.2699 12 6 2.2471 -3.6808 -0.1624 13 6 2.5243 -3.8739 -1.6691 14 6 1.2964 -3.3396 -2.3680 15 6 0.8251 -3.5148 -3.6599 16 6 -0.3485 -2.8901 -4.0378 17 7 -1.0209 -2.1455 -3.1817 18 6 -0.6017 -1.9575 -1.9460 19 6 0.5673 -2.5463 -1.4982 20 1 -0.4850 0.8400 0.0004 21 1 -0.4966 -1.8582 0.9193 22 1 -0.2602 -3.6218 0.8756 23 1 1.4446 -1.7345 2.3661 24 1 0.2831 -2.7205 3.0326 25 1 1.7859 -4.5718 0.2637 26 1 3.1631 -3.4252 0.3702 27 1 2.6591 -4.9313 -1.8966 28 1 3.4063 -3.3077 -1.9687 29 1 1.3699 -4.1274 -4.3629 30 1 -0.7210 -3.0164 -5.0435 31 1 -1.1776 -1.3370 -1.2756 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260956205.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:44 Heat of formation + Delta-G solvation = 29.739972 kcal Electronic energy + Delta-G solvation = -15090.021450 eV Core-core repulsion = 12756.706442 eV Total energy + Delta-G solvation = -2333.315009 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.78600 -36.48457 -33.46268 -31.92396 -30.43865 -28.73035 -27.42264 -24.71566 -22.38115 -22.34471 -20.55664 -18.99375 -16.53480 -15.56451 -15.09338 -14.71031 -14.60249 -13.98141 -13.51579 -13.24297 -12.64138 -12.59029 -12.29351 -11.80652 -11.33580 -11.08435 -11.03953 -10.71836 -10.52346 -10.22214 -10.06470 -9.44368 -9.36068 -8.65969 -8.47524 -8.37672 -7.71438 -7.41655 -6.13592 -4.24644 2.20096 2.30747 3.19492 3.29816 3.32467 4.28188 4.86530 5.07592 5.28639 5.41717 5.73256 5.85869 5.93672 5.98495 6.12983 6.23284 6.46771 6.59698 6.71424 6.72191 6.88434 6.93706 7.07226 7.15362 7.27688 7.45516 7.70876 7.83268 7.88693 8.21891 8.41059 8.60417 8.80353 9.02959 9.39270 10.82494 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.024732 B = 0.014200 C = 0.011873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.853498 B = 1971.295984 C = 2357.702278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.065 3.935 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.491 4.491 8 H 0.063 0.937 9 C 0.111 3.889 10 C 0.071 3.929 11 N -0.846 5.846 12 C -0.096 4.096 13 C -0.076 4.076 14 C -0.082 4.082 15 C -0.178 4.178 16 C 0.058 3.942 17 N -0.503 5.503 18 C 0.120 3.880 19 C -0.072 4.072 20 H 0.263 0.737 21 H 0.067 0.933 22 H 0.023 0.977 23 H 0.346 0.654 24 H 0.312 0.688 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.113 0.887 30 H 0.138 0.862 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.386 -4.595 -1.407 5.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.137 4.137 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.529 4.529 8 H 0.081 0.919 9 C 0.109 3.891 10 C -0.060 4.060 11 N -0.374 5.374 12 C -0.134 4.134 13 C -0.113 4.113 14 C -0.090 4.090 15 C -0.198 4.198 16 C -0.099 4.099 17 N -0.212 5.212 18 C -0.037 4.037 19 C -0.075 4.075 20 H 0.073 0.927 21 H 0.085 0.915 22 H 0.042 0.958 23 H 0.160 0.840 24 H 0.121 0.879 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.132 0.868 30 H 0.155 0.845 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.866 -4.699 -1.948 5.160 hybrid contribution 0.666 1.474 0.110 1.621 sum 1.531 -3.225 -1.838 4.015 Atomic orbital electron populations 1.69693 1.05869 1.26621 1.49727 1.24970 0.94897 0.99186 0.94670 0.86512 0.80247 0.83558 0.77647 1.19726 1.21026 1.20997 1.21057 0.93546 0.89306 1.48988 0.91904 1.17706 0.90923 0.93481 0.86954 1.21840 0.96806 0.98012 0.89315 1.58809 1.30972 1.44173 1.03396 1.22268 1.00188 0.98253 0.92676 1.20984 0.94941 0.98879 0.96472 1.20931 0.97054 0.97331 0.93676 1.21358 0.98759 1.03728 0.95966 1.22326 0.92911 0.95995 0.98645 1.67744 1.33564 1.15830 1.04062 1.22978 0.94549 0.95064 0.91066 1.22002 0.93489 0.92668 0.99366 0.92660 0.91493 0.95844 0.83986 0.87864 0.92944 0.91345 0.92474 0.90858 0.86848 0.84502 0.80923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.15 8.14 55.43 0.45 -21.70 16 2 C 0.06 1.61 5.18 -17.82 -0.09 1.52 16 3 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.49 -12.13 6.78 -34.44 -0.23 -12.37 16 8 H 0.06 1.58 7.59 -52.49 -0.40 1.18 16 9 C 0.11 2.52 0.36 -155.85 -0.06 2.47 16 10 C 0.07 1.58 5.30 -3.82 -0.02 1.56 16 11 N -0.85 -16.97 9.33 -10.37 -0.10 -17.06 16 12 C -0.10 -1.95 5.85 -25.25 -0.15 -2.10 16 13 C -0.08 -1.43 6.76 -26.97 -0.18 -1.61 16 14 C -0.08 -1.73 6.20 -104.22 -0.65 -2.38 16 15 C -0.18 -3.39 10.12 -39.45 -0.40 -3.79 16 16 C 0.06 1.13 11.19 -17.54 -0.20 0.94 16 17 N -0.50 -11.36 10.36 -13.22 -0.14 -11.50 16 18 C 0.12 2.86 10.01 -17.51 -0.18 2.68 16 19 C -0.07 -1.68 4.61 -104.27 -0.48 -2.16 16 20 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 21 H 0.07 1.62 5.74 -51.93 -0.30 1.32 16 22 H 0.02 0.51 8.10 -51.93 -0.42 0.09 16 23 H 0.35 7.35 7.86 -39.29 -0.31 7.04 16 24 H 0.31 5.53 9.08 -39.29 -0.36 5.17 16 25 H 0.05 1.03 7.88 -51.93 -0.41 0.62 16 26 H 0.07 1.38 7.74 -51.93 -0.40 0.98 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 29 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.14 2.18 8.06 -52.49 -0.42 1.76 16 31 H 0.17 4.32 6.05 -52.49 -0.32 4.00 16 LS Contribution 251.79 15.07 3.79 3.79 Total: -1.00 -26.06 251.79 -7.38 -33.43 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -3.74 Total: 13.15 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -2.63 Total: -15.25 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: 0.22 Total: -50.27 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -26.06 -7.38 -33.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260956205.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.173 kcal (2) G-P(sol) polarization free energy of solvation -26.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds