Wall clock time and date at job start Mon Mar 30 2020 02:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 120.00093 * 2 1 4 4 H 1.48491 * 109.47144 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47153 * 300.00593 * 3 2 1 6 6 H 1.48501 * 109.46881 * 60.00277 * 3 2 1 7 7 C 1.37878 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99944 * 186.76448 * 7 2 1 9 9 C 1.50695 * 120.00025 * 6.77077 * 7 2 1 10 10 C 1.53004 * 110.26133 * 300.55945 * 9 7 2 11 11 N 1.46899 * 109.47127 * 302.42723 * 10 9 7 12 12 C 1.54401 * 110.29779 * 178.50534 * 9 7 2 13 13 C 1.54416 * 102.44903 * 267.22762 * 12 9 7 14 14 C 1.51049 * 105.15307 * 333.86208 * 13 12 9 15 15 C 1.38627 * 131.51964 * 197.06970 * 14 13 12 16 16 C 1.38211 * 119.10109 * 180.24414 * 15 14 13 17 17 N 1.31890 * 120.70477 * 359.42591 * 16 15 14 18 18 C 1.31834 * 121.78784 * 0.59692 * 17 16 15 19 19 C 1.38339 * 120.75816 * 359.68526 * 18 17 16 20 20 H 0.96991 * 120.00104 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.46916 * 62.42541 * 10 9 7 22 22 H 1.08995 * 109.47332 * 182.42539 * 10 9 7 23 23 H 1.00896 * 111.00267 * 57.02829 * 11 10 9 24 24 H 1.00903 * 111.00058 * 180.98013 * 11 10 9 25 25 H 1.08997 * 110.81527 * 148.99041 * 12 9 7 26 26 H 1.08997 * 110.81039 * 25.46559 * 12 9 7 27 27 H 1.09001 * 110.31093 * 214.93637 * 13 12 9 28 28 H 1.09010 * 110.39028 * 92.82126 * 13 12 9 29 29 H 1.08000 * 120.44882 * 359.96745 * 15 14 13 30 30 H 1.07991 * 119.64642 * 179.69217 * 16 15 14 31 31 H 1.07994 * 119.62150 * 179.70459 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0789 -1.1973 0.1096 9 6 1.2590 -2.4945 -0.1550 10 6 0.2408 -2.6590 0.9752 11 7 0.9322 -2.5983 2.2699 12 6 2.2471 -3.6808 -0.1624 13 6 2.5243 -3.8739 -1.6691 14 6 1.2964 -3.3396 -2.3680 15 6 0.8251 -3.5148 -3.6599 16 6 -0.3485 -2.8901 -4.0378 17 7 -1.0209 -2.1455 -3.1817 18 6 -0.6017 -1.9575 -1.9460 19 6 0.5673 -2.5463 -1.4982 20 1 -0.4850 0.8400 0.0004 21 1 -0.4966 -1.8582 0.9193 22 1 -0.2602 -3.6218 0.8756 23 1 1.4446 -1.7345 2.3661 24 1 0.2831 -2.7205 3.0326 25 1 1.7859 -4.5718 0.2637 26 1 3.1631 -3.4252 0.3702 27 1 2.6591 -4.9313 -1.8966 28 1 3.4063 -3.3077 -1.9687 29 1 1.3699 -4.1274 -4.3629 30 1 -0.7210 -3.0164 -5.0435 31 1 -1.1776 -1.3370 -1.2756 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260956205.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:43 Heat of formation + Delta-G solvation = 13.365458 kcal Electronic energy + Delta-G solvation = -15090.731503 eV Core-core repulsion = 12756.706442 eV Total energy + Delta-G solvation = -2334.025061 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.41289 -38.15257 -35.15564 -33.73252 -32.05787 -30.35581 -29.10486 -26.54559 -24.04464 -23.97892 -22.13581 -20.73844 -18.31239 -17.25046 -16.71181 -16.43648 -16.33952 -15.60381 -15.11571 -14.93860 -14.35585 -14.23300 -13.89654 -13.44024 -13.09102 -12.90236 -12.80838 -12.37723 -12.22290 -11.89398 -11.74951 -11.17906 -11.07489 -10.51090 -10.12796 -9.98463 -9.40967 -9.12176 -8.00364 -6.16830 0.58643 0.68526 1.37553 1.44443 1.51016 2.41760 3.15418 3.24324 3.77309 3.86418 4.14690 4.25190 4.45542 4.50219 4.57049 4.64819 4.88973 5.00244 5.07935 5.10612 5.28624 5.32417 5.41946 5.45774 5.65329 5.67726 5.97152 6.02422 6.21085 6.38945 6.69467 6.81596 7.07237 7.37971 7.48367 8.91611 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.024732 B = 0.014200 C = 0.011873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.853498 B = 1971.295984 C = 2357.702278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.031 3.969 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.296 1.296 6 H -0.281 1.281 7 C -0.497 4.497 8 H 0.054 0.946 9 C 0.103 3.897 10 C 0.079 3.921 11 N -0.837 5.837 12 C -0.092 4.092 13 C -0.069 4.069 14 C -0.091 4.091 15 C -0.169 4.169 16 C 0.056 3.944 17 N -0.525 5.525 18 C 0.097 3.903 19 C -0.100 4.100 20 H 0.258 0.742 21 H 0.042 0.958 22 H 0.022 0.978 23 H 0.341 0.659 24 H 0.326 0.674 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.157 0.843 30 H 0.177 0.823 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.479 -5.855 -2.555 6.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.169 4.169 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.223 1.223 6 H -0.207 1.207 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.101 3.899 10 C -0.052 4.052 11 N -0.365 5.365 12 C -0.130 4.130 13 C -0.106 4.106 14 C -0.099 4.099 15 C -0.189 4.189 16 C -0.101 4.101 17 N -0.235 5.235 18 C -0.059 4.059 19 C -0.103 4.103 20 H 0.068 0.932 21 H 0.060 0.940 22 H 0.041 0.959 23 H 0.154 0.846 24 H 0.137 0.863 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.174 0.826 30 H 0.194 0.806 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.957 -5.966 -3.069 6.988 hybrid contribution 0.293 1.821 0.414 1.890 sum 2.250 -4.144 -2.654 5.411 Atomic orbital electron populations 1.69836 1.06436 1.26459 1.50186 1.25452 0.95419 1.01105 0.94961 0.85805 0.79449 0.81183 0.76951 1.19479 1.22302 1.20711 1.21178 0.93146 0.90416 1.48789 0.92788 1.17770 0.91342 0.93665 0.87083 1.21665 0.96384 0.96872 0.90268 1.58767 1.31028 1.43556 1.03181 1.22190 0.99324 0.97283 0.94192 1.20980 0.93970 1.00886 0.94759 1.21352 0.97425 0.96742 0.94376 1.21788 0.98317 1.03008 0.95770 1.23037 0.92869 0.94530 0.99636 1.67702 1.34650 1.17097 1.04014 1.22690 0.95298 0.96193 0.91698 1.22078 0.94031 0.94077 1.00132 0.93209 0.94027 0.95927 0.84643 0.86350 0.92502 0.91583 0.89135 0.90421 0.82557 0.80589 0.83329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.94 8.14 21.45 0.17 -45.76 16 2 C 0.03 1.56 5.18 84.65 0.44 2.00 16 3 Si 0.94 41.66 29.54 68.60 2.03 43.69 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.50 -24.57 6.78 25.60 0.17 -24.40 16 8 H 0.05 2.70 7.59 -2.91 -0.02 2.68 16 9 C 0.10 4.66 0.36 -53.05 -0.02 4.64 16 10 C 0.08 3.55 5.30 86.30 0.46 4.01 16 11 N -0.84 -33.35 9.33 -186.72 -1.74 -35.09 16 12 C -0.09 -3.60 5.85 31.55 0.18 -3.41 16 13 C -0.07 -2.40 6.76 30.44 0.21 -2.19 16 14 C -0.09 -3.61 6.20 -19.60 -0.12 -3.74 16 15 C -0.17 -5.82 10.12 22.36 0.23 -5.59 16 16 C 0.06 2.04 11.19 84.68 0.95 2.99 16 17 N -0.52 -23.39 10.36 -195.75 -2.03 -25.42 16 18 C 0.10 4.67 10.01 84.72 0.85 5.52 16 19 C -0.10 -4.63 4.61 -19.63 -0.09 -4.72 16 20 H 0.26 13.12 8.31 -92.72 -0.77 12.35 16 21 H 0.04 2.08 5.74 -2.39 -0.01 2.07 16 22 H 0.02 0.99 8.10 -2.39 -0.02 0.97 16 23 H 0.34 14.43 7.86 -89.70 -0.71 13.73 16 24 H 0.33 11.39 9.08 -89.69 -0.81 10.57 16 25 H 0.06 2.13 7.88 -2.39 -0.02 2.11 16 26 H 0.07 2.57 7.74 -2.39 -0.02 2.55 16 27 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 29 H 0.16 4.00 8.06 -2.91 -0.02 3.98 16 30 H 0.18 4.87 8.06 -2.92 -0.02 4.85 16 31 H 0.15 7.79 6.05 -2.91 -0.02 7.77 16 Total: -1.00 -55.61 251.79 1.32 -54.29 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: -0.37 Total: 33.19 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 3.25 Total: -24.90 kcal Atomic # 7 Polarization: -102.68 SS G_CDS: -3.60 Total: -106.27 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -55.61 1.32 -54.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260956205.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.655 kcal (2) G-P(sol) polarization free energy of solvation -55.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds