Wall clock time and date at job start Mon Mar 30 2020 02:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99777 * 2 1 4 4 H 1.48495 * 109.46897 * 273.34010 * 3 2 1 5 5 H 1.48494 * 109.46892 * 33.33956 * 3 2 1 6 6 H 1.48496 * 109.46757 * 153.34070 * 3 2 1 7 7 C 1.37870 * 120.00012 * 180.27104 * 2 1 3 8 8 H 1.08001 * 120.00270 * 353.07255 * 7 2 1 9 9 C 1.50703 * 120.00196 * 173.06137 * 7 2 1 10 10 H 1.09000 * 110.25625 * 337.18659 * 9 7 2 11 11 C 1.54344 * 110.29296 * 99.33869 * 9 7 2 12 12 C 1.54347 * 102.66824 * 145.48331 * 11 9 7 13 13 C 1.51330 * 105.21923 * 333.44282 * 12 11 9 14 14 N 1.31041 * 142.35815 * 197.23452 * 13 12 11 15 15 N 1.40016 * 108.24316 * 180.02562 * 14 13 12 16 16 H 0.97005 * 126.02710 * 179.97438 * 15 14 13 17 17 C 1.34887 * 107.93810 * 359.97438 * 15 14 13 18 18 C 1.50703 * 126.10953 * 179.97438 * 17 15 14 19 19 C 1.53003 * 117.50214 * 8.75251 * 18 17 15 20 20 C 1.52990 * 117.50558 * 300.08782 * 18 17 15 21 21 C 1.35460 * 107.77516 * 0.02562 * 17 15 14 22 22 H 0.97004 * 119.99938 * 359.72314 * 1 2 3 23 23 H 1.08998 * 110.76976 * 263.76725 * 11 9 7 24 24 H 1.09002 * 110.76607 * 27.17487 * 11 9 7 25 25 H 1.09002 * 110.27375 * 214.51988 * 12 11 9 26 26 H 1.08994 * 110.31749 * 92.38890 * 12 11 9 27 27 H 1.09010 * 115.54368 * 154.41442 * 18 17 15 28 28 H 1.08999 * 117.49358 * 359.97438 * 19 18 17 29 29 H 1.09000 * 117.49687 * 145.01594 * 19 18 17 30 30 H 1.09001 * 117.50351 * 214.98234 * 20 18 17 31 31 H 1.09002 * 117.49894 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4260 2.0872 -1.3977 5 1 1.4837 2.6312 0.7695 6 1 3.5802 1.4209 0.6282 7 6 2.0045 -1.1940 -0.0056 8 1 1.4705 -2.1264 0.1027 9 6 3.5033 -1.1981 -0.1633 10 1 3.8342 -0.2800 -0.6490 11 6 4.1858 -1.3545 1.2121 12 6 5.4364 -2.1943 0.8759 13 6 5.0649 -2.9821 -0.3616 14 7 5.4216 -4.0210 -1.0762 15 7 4.5375 -4.1348 -2.1559 16 1 4.5656 -4.8149 -2.8471 17 6 3.6399 -3.1321 -2.0653 18 6 2.5034 -2.8685 -3.0193 19 6 2.2142 -3.9287 -4.0838 20 6 2.8576 -2.5984 -4.4829 21 6 3.9433 -2.4036 -0.9643 22 1 -0.4850 0.8401 0.0041 23 1 4.4701 -0.3825 1.6154 24 1 3.5372 -1.8878 1.9070 25 1 5.6698 -2.8703 1.6985 26 1 6.2853 -1.5428 0.6685 27 1 1.6526 -2.3313 -2.5998 28 1 2.8463 -4.8167 -4.0944 29 1 1.1733 -4.0887 -4.3651 30 1 2.2399 -1.8837 -5.0266 31 1 3.9128 -2.6108 -4.7559 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260957147.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:51 Heat of formation + Delta-G solvation = 97.620768 kcal Electronic energy + Delta-G solvation = -14618.416631 eV Core-core repulsion = 12288.045155 eV Total energy + Delta-G solvation = -2330.371476 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.91874 -36.87371 -35.53604 -32.36261 -30.16095 -28.65999 -27.42038 -23.40777 -22.86509 -22.18205 -20.78932 -18.86382 -18.12851 -16.97820 -16.54044 -15.26379 -14.58611 -14.21435 -13.77176 -13.34266 -12.88583 -12.47733 -12.10860 -11.86880 -11.41870 -11.14698 -11.00841 -10.84761 -10.51981 -10.35013 -10.18076 -9.99650 -9.83524 -9.29926 -9.27991 -8.51143 -8.47206 -7.37130 -6.05007 -4.01450 2.42940 3.28971 3.33996 3.39648 3.41803 3.46406 4.24021 4.45037 4.85975 4.89994 5.12186 5.27132 5.30246 5.58790 5.71931 5.82730 5.92419 6.04925 6.12655 6.24600 6.34687 6.43535 6.62132 6.74710 6.81040 7.07358 7.18123 7.26310 7.45934 7.79874 7.93329 8.38050 8.60152 9.02166 9.59091 11.08116 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.023840 B = 0.013031 C = 0.009420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.218925 B = 2148.125903 C = 2971.619770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.071 3.929 3 Si 0.871 3.129 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.261 1.261 7 C -0.497 4.497 8 H 0.073 0.927 9 C 0.082 3.918 10 H 0.042 0.958 11 C -0.117 4.117 12 C -0.031 4.031 13 C 0.041 3.959 14 N -0.296 5.296 15 N -0.488 5.488 16 H 0.428 0.572 17 C 0.117 3.883 18 C -0.072 4.072 19 C -0.186 4.186 20 C -0.173 4.173 21 C -0.193 4.193 22 H 0.262 0.738 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.146 0.854 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.891 -3.847 -5.068 9.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.699 3.301 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.186 1.186 7 C -0.535 4.535 8 H 0.091 0.909 9 C 0.062 3.938 10 H 0.060 0.940 11 C -0.155 4.155 12 C -0.070 4.070 13 C -0.126 4.126 14 N -0.119 5.119 15 N -0.198 5.198 16 H 0.271 0.729 17 C -0.008 4.008 18 C -0.092 4.092 19 C -0.223 4.223 20 C -0.211 4.211 21 C -0.204 4.204 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.163 0.837 28 H 0.102 0.898 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.552 -4.668 -5.160 10.269 hybrid contribution -0.229 1.062 -0.418 1.164 sum 7.323 -3.606 -5.578 9.887 Atomic orbital electron populations 1.69922 1.06277 1.26795 1.50952 1.25053 0.94624 0.98786 0.94559 0.86938 0.80689 0.84062 0.78431 1.20491 1.21602 1.18583 1.20917 0.88931 0.94390 1.49295 0.90912 1.18158 0.96531 0.90034 0.89083 0.94035 1.22716 0.94168 0.98233 1.00428 1.20596 0.99559 0.95883 0.91006 1.23325 0.97003 0.93840 0.98422 1.76846 1.15005 1.20600 0.99470 1.46158 1.24249 1.25648 1.23729 0.72865 1.19130 0.92930 0.91128 0.97623 1.20748 0.97955 1.02755 0.87705 1.22969 1.02017 0.92697 1.04659 1.23002 1.01201 0.99162 0.97705 1.21027 0.99116 1.03354 0.96857 0.92797 0.91820 0.90809 0.91407 0.90710 0.83654 0.89787 0.88080 0.88116 0.89281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 13.96 55.43 0.77 -25.78 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.87 20.75 27.01 -169.99 -4.59 16.16 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.26 -5.86 6.28 56.52 0.35 -5.50 16 7 C -0.50 -13.41 8.61 -34.44 -0.30 -13.71 16 8 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 9 C 0.08 1.91 2.31 -91.93 -0.21 1.70 16 10 H 0.04 0.99 5.65 -51.93 -0.29 0.70 16 11 C -0.12 -2.37 6.55 -25.32 -0.17 -2.54 16 12 C -0.03 -0.56 6.76 -26.87 -0.18 -0.74 16 13 C 0.04 0.85 8.10 -82.02 -0.66 0.18 16 14 N -0.30 -5.95 12.70 33.86 0.43 -5.52 16 15 N -0.49 -8.73 7.23 33.49 0.24 -8.49 16 16 H 0.43 6.06 7.96 -182.66 -1.45 4.60 16 17 C 0.12 2.33 6.72 -82.24 -0.55 1.78 16 18 C -0.07 -1.28 6.25 -91.77 -0.57 -1.85 16 19 C -0.19 -2.53 10.15 -26.69 -0.27 -2.80 16 20 C -0.17 -2.47 10.24 -26.70 -0.27 -2.74 16 21 C -0.19 -4.28 6.08 -104.73 -0.64 -4.92 16 22 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 23 H 0.06 1.21 7.54 -51.93 -0.39 0.82 16 24 H 0.07 1.54 7.91 -51.93 -0.41 1.12 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.15 3.01 7.94 -51.92 -0.41 2.60 16 28 H 0.08 1.00 7.16 -51.93 -0.37 0.63 16 29 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 259.85 15.07 3.92 3.92 Total: -1.00 -30.38 259.85 -8.21 -38.58 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -5.05 Total: 4.90 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -3.92 Total: -23.77 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 1.45 Total: -39.79 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.59 Total: 16.16 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.38 -8.21 -38.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260957147.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.202 kcal (2) G-P(sol) polarization free energy of solvation -30.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds