Wall clock time and date at job start Mon Mar 30 2020 02:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99777 * 2 1 4 4 H 1.48495 * 109.46897 * 273.34010 * 3 2 1 5 5 H 1.48494 * 109.46892 * 33.33956 * 3 2 1 6 6 H 1.48496 * 109.46757 * 153.34070 * 3 2 1 7 7 C 1.37870 * 120.00012 * 180.27104 * 2 1 3 8 8 H 1.08001 * 120.00270 * 353.07255 * 7 2 1 9 9 C 1.50703 * 120.00196 * 173.06137 * 7 2 1 10 10 H 1.09000 * 110.25625 * 337.18659 * 9 7 2 11 11 C 1.54344 * 110.29296 * 99.33869 * 9 7 2 12 12 C 1.54347 * 102.66824 * 145.48331 * 11 9 7 13 13 C 1.51330 * 105.21923 * 333.44282 * 12 11 9 14 14 N 1.31041 * 142.35815 * 197.23452 * 13 12 11 15 15 N 1.40016 * 108.24316 * 180.02562 * 14 13 12 16 16 H 0.97005 * 126.02710 * 179.97438 * 15 14 13 17 17 C 1.34887 * 107.93810 * 359.97438 * 15 14 13 18 18 C 1.50703 * 126.10953 * 179.97438 * 17 15 14 19 19 C 1.53003 * 117.50214 * 8.75251 * 18 17 15 20 20 C 1.52990 * 117.50558 * 300.08782 * 18 17 15 21 21 C 1.35460 * 107.77516 * 0.02562 * 17 15 14 22 22 H 0.97004 * 119.99938 * 359.72314 * 1 2 3 23 23 H 1.08998 * 110.76976 * 263.76725 * 11 9 7 24 24 H 1.09002 * 110.76607 * 27.17487 * 11 9 7 25 25 H 1.09002 * 110.27375 * 214.51988 * 12 11 9 26 26 H 1.08994 * 110.31749 * 92.38890 * 12 11 9 27 27 H 1.09010 * 115.54368 * 154.41442 * 18 17 15 28 28 H 1.08999 * 117.49358 * 359.97438 * 19 18 17 29 29 H 1.09000 * 117.49687 * 145.01594 * 19 18 17 30 30 H 1.09001 * 117.50351 * 214.98234 * 20 18 17 31 31 H 1.09002 * 117.49894 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4260 2.0872 -1.3977 5 1 1.4837 2.6312 0.7695 6 1 3.5802 1.4209 0.6282 7 6 2.0045 -1.1940 -0.0056 8 1 1.4705 -2.1264 0.1027 9 6 3.5033 -1.1981 -0.1633 10 1 3.8342 -0.2800 -0.6490 11 6 4.1858 -1.3545 1.2121 12 6 5.4364 -2.1943 0.8759 13 6 5.0649 -2.9821 -0.3616 14 7 5.4216 -4.0210 -1.0762 15 7 4.5375 -4.1348 -2.1559 16 1 4.5656 -4.8149 -2.8471 17 6 3.6399 -3.1321 -2.0653 18 6 2.5034 -2.8685 -3.0193 19 6 2.2142 -3.9287 -4.0838 20 6 2.8576 -2.5984 -4.4829 21 6 3.9433 -2.4036 -0.9643 22 1 -0.4850 0.8401 0.0041 23 1 4.4701 -0.3825 1.6154 24 1 3.5372 -1.8878 1.9070 25 1 5.6698 -2.8703 1.6985 26 1 6.2853 -1.5428 0.6685 27 1 1.6526 -2.3313 -2.5998 28 1 2.8463 -4.8167 -4.0944 29 1 1.1733 -4.0887 -4.3651 30 1 2.2399 -1.8837 -5.0266 31 1 3.9128 -2.6108 -4.7559 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260957147.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:51 Heat of formation + Delta-G solvation = 78.565955 kcal Electronic energy + Delta-G solvation = -14619.242910 eV Core-core repulsion = 12288.045155 eV Total energy + Delta-G solvation = -2331.197755 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.45030 -38.22006 -37.11931 -34.39513 -31.78282 -30.19402 -29.19146 -25.20430 -24.37722 -23.31939 -22.37969 -20.39142 -19.75666 -19.00816 -17.98795 -16.67656 -16.23296 -15.99456 -15.17173 -14.91370 -14.73023 -13.98677 -13.80163 -13.57229 -12.84516 -12.57878 -12.50529 -12.48859 -12.16450 -11.80750 -11.70928 -11.64790 -11.37717 -11.32703 -10.95732 -10.57357 -9.97679 -8.98621 -8.19273 -6.19431 0.91454 1.41476 1.43932 1.55326 1.87246 1.91634 2.43895 2.97318 3.16927 3.35906 3.57650 3.85681 4.10761 4.16944 4.38817 4.45339 4.64479 4.65926 4.81908 4.88496 4.96142 5.02883 5.13637 5.15853 5.28170 5.46506 5.51660 5.61162 5.75969 5.84242 6.45732 6.53458 6.83205 6.85314 7.43681 8.97666 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.023840 B = 0.013031 C = 0.009420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.218925 B = 2148.125903 C = 2971.619770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.014 3.986 3 Si 0.935 3.065 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.233 1.233 7 C -0.490 4.490 8 H 0.022 0.978 9 C 0.079 3.921 10 H 0.038 0.962 11 C -0.114 4.114 12 C -0.023 4.023 13 C 0.036 3.964 14 N -0.306 5.306 15 N -0.471 5.471 16 H 0.445 0.555 17 C 0.127 3.873 18 C -0.115 4.115 19 C -0.158 4.158 20 C -0.153 4.153 21 C -0.246 4.246 22 H 0.263 0.737 23 H 0.081 0.919 24 H 0.058 0.942 25 H 0.091 0.909 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.185 -3.921 -5.982 11.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.183 4.183 3 Si 0.759 3.241 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.156 1.156 7 C -0.528 4.528 8 H 0.041 0.959 9 C 0.059 3.941 10 H 0.056 0.944 11 C -0.153 4.153 12 C -0.062 4.062 13 C -0.131 4.131 14 N -0.130 5.130 15 N -0.183 5.183 16 H 0.292 0.708 17 C 0.000 4.000 18 C -0.136 4.136 19 C -0.195 4.195 20 C -0.191 4.191 21 C -0.257 4.257 22 H 0.072 0.928 23 H 0.099 0.901 24 H 0.077 0.923 25 H 0.109 0.891 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.126 0.874 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.880 -4.780 -6.082 12.548 hybrid contribution -1.043 0.955 -0.213 1.430 sum 8.837 -3.825 -6.295 11.504 Atomic orbital electron populations 1.70078 1.08237 1.27735 1.53176 1.25874 0.95319 1.02653 0.94418 0.85911 0.80458 0.79007 0.78709 1.20110 1.21634 1.15637 1.21001 0.91195 0.92372 1.48216 0.95930 1.18125 0.93854 0.90840 0.91263 0.94396 1.22593 0.94949 0.99610 0.98099 1.20626 0.98901 0.96023 0.90684 1.23741 0.96481 0.93703 0.99135 1.76786 1.15714 1.20480 0.99998 1.46086 1.23216 1.25321 1.23637 0.70783 1.19379 0.92867 0.90619 0.97139 1.20528 0.96880 1.06809 0.89358 1.23129 1.03338 0.92814 1.00180 1.23103 1.02300 0.99787 0.93900 1.21156 1.01189 1.04457 0.98908 0.92832 0.90053 0.92309 0.89066 0.87951 0.87930 0.87393 0.86817 0.87139 0.87956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.55 13.96 21.45 0.30 -58.25 16 2 C 0.01 0.78 5.47 84.65 0.46 1.24 16 3 Si 0.93 42.95 27.01 68.60 1.85 44.80 16 4 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 6 H -0.23 -9.58 6.28 99.48 0.62 -8.96 16 7 C -0.49 -27.56 8.61 25.60 0.22 -27.34 16 8 H 0.02 1.45 8.06 -2.91 -0.02 1.42 16 9 C 0.08 3.71 2.31 -11.64 -0.03 3.68 16 10 H 0.04 1.78 5.65 -2.39 -0.01 1.76 16 11 C -0.11 -4.48 6.55 31.51 0.21 -4.28 16 12 C -0.02 -0.77 6.76 30.51 0.21 -0.57 16 13 C 0.04 1.43 8.10 43.27 0.35 1.78 16 14 N -0.31 -11.73 12.70 -46.80 -0.59 -12.32 16 15 N -0.47 -16.00 7.23 -47.95 -0.35 -16.34 16 16 H 0.45 11.38 7.96 -213.37 -1.70 9.68 16 17 C 0.13 5.00 6.72 41.45 0.28 5.27 16 18 C -0.12 -4.12 6.25 -11.54 -0.07 -4.19 16 19 C -0.16 -3.92 10.15 30.62 0.31 -3.61 16 20 C -0.15 -4.06 10.24 30.62 0.31 -3.75 16 21 C -0.25 -10.92 6.08 -19.93 -0.12 -11.04 16 22 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 23 H 0.08 2.87 7.54 -2.39 -0.02 2.85 16 24 H 0.06 2.44 7.91 -2.39 -0.02 2.43 16 25 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 26 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 27 H 0.10 4.56 7.94 -2.38 -0.02 4.54 16 28 H 0.11 2.17 7.16 -2.39 -0.02 2.16 16 29 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -68.45 259.85 2.70 -65.75 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -0.64 Total: 19.16 kcal Atomic # 6 Polarization: -44.93 SS G_CDS: 2.13 Total: -42.80 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -0.64 Total: -86.91 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.85 Total: 44.80 kcal Total: -68.45 2.70 -65.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260957147.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.316 kcal (2) G-P(sol) polarization free energy of solvation -68.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds