Wall clock time and date at job start Mon Mar 30 2020 02:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.80982 * 60.84943 * 9 7 2 11 11 C 1.51034 * 109.80987 * 299.99793 * 9 7 2 12 12 N 1.34396 * 127.52087 * 72.76387 * 11 9 7 13 13 H 0.97006 * 126.10619 * 0.31412 * 12 11 9 14 14 N 1.40240 * 107.78700 * 180.35307 * 12 11 9 15 15 C 1.30989 * 108.24621 * 359.80320 * 14 12 11 16 16 C 1.35581 * 124.46768 * 252.83115 * 11 9 7 17 17 C 1.50780 * 125.22366 * 359.43027 * 16 11 9 18 18 C 1.53300 * 109.16571 * 18.52882 * 17 16 11 19 19 C 1.53147 * 109.21044 * 312.97325 * 18 17 16 20 20 C 1.52771 * 117.80507 * 209.89354 * 19 18 17 21 21 C 1.52721 * 117.89627 * 278.92551 * 19 18 17 22 22 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 23 23 H 1.07994 * 125.91402 * 179.97438 * 15 14 12 24 24 H 1.08997 * 109.52160 * 138.43069 * 17 16 11 25 25 H 1.08998 * 109.52446 * 258.61757 * 17 16 11 26 26 H 1.08996 * 109.51555 * 72.87979 * 18 17 16 27 27 H 1.08996 * 109.51508 * 192.99590 * 18 17 16 28 28 H 1.09006 * 117.50928 * 215.34766 * 20 19 18 29 29 H 1.08998 * 117.51448 * 0.42577 * 20 19 18 30 30 H 1.09000 * 117.50192 * 359.74317 * 21 19 18 31 31 H 1.09003 * 117.50266 * 144.75661 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6341 -2.5687 -0.8976 11 6 0.3794 -2.5881 1.2285 12 7 -0.7542 -1.9110 1.4792 13 1 -1.1760 -1.2648 0.8913 14 7 -1.2180 -2.3049 2.7427 15 6 -0.3859 -3.1934 3.2264 16 6 0.6306 -3.3928 2.2904 17 6 1.8040 -4.3318 2.4116 18 6 2.8866 -3.9164 1.4088 19 6 2.2403 -3.6709 0.0423 20 6 3.0856 -3.9323 -1.2031 21 6 1.9447 -4.8844 -0.8366 22 1 -0.4849 0.8401 0.0004 23 1 -0.4710 -3.6858 4.1837 24 1 2.2067 -4.2829 3.4233 25 1 1.4796 -5.3499 2.1965 26 1 3.3696 -3.0017 1.7525 27 1 3.6286 -4.7104 1.3243 28 1 2.9370 -3.2746 -2.0596 29 1 4.1052 -4.2876 -1.0542 30 1 2.2138 -5.8660 -0.4466 31 1 1.0453 -4.8533 -1.4517 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260980969.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:17 Heat of formation + Delta-G solvation = 82.123087 kcal Electronic energy + Delta-G solvation = -15079.068030 eV Core-core repulsion = 12748.024524 eV Total energy + Delta-G solvation = -2331.043506 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.21850 -37.58023 -33.40220 -32.44238 -30.27744 -28.54293 -26.85823 -24.06505 -22.30365 -21.60384 -20.34553 -19.34834 -17.33359 -16.22568 -15.83471 -14.99860 -14.36928 -13.80301 -13.48203 -12.94968 -12.76892 -12.38573 -12.04484 -11.76811 -11.43127 -11.19342 -10.91798 -10.83561 -10.69180 -10.40263 -10.01043 -9.57159 -9.39777 -9.23206 -8.75092 -8.72599 -8.10605 -7.00837 -6.43664 -4.41455 3.17788 3.23550 3.25297 3.38914 3.95388 4.16362 4.46141 4.63064 4.98444 5.42957 5.61999 5.67726 5.84117 5.97592 6.03040 6.24956 6.31554 6.41369 6.51092 6.52306 6.61435 6.77255 6.82629 6.94537 7.01589 7.13507 7.28307 7.59709 7.67360 7.91068 8.04492 8.61929 8.88332 9.13526 9.34019 10.70057 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.023235 B = 0.015204 C = 0.010836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.814744 B = 1841.238641 C = 2583.349414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.057 3.943 3 Si 0.915 3.085 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.483 4.483 8 H 0.070 0.930 9 C 0.129 3.871 10 H 0.042 0.958 11 C 0.165 3.835 12 N -0.423 5.423 13 H 0.445 0.555 14 N -0.352 5.352 15 C 0.031 3.969 16 C -0.298 4.298 17 C -0.020 4.020 18 C -0.075 4.075 19 C -0.087 4.087 20 C -0.171 4.171 21 C -0.188 4.188 22 H 0.271 0.729 23 H 0.158 0.842 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.634 -5.982 0.332 7.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.141 4.141 3 Si 0.742 3.258 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.521 4.521 8 H 0.088 0.912 9 C 0.109 3.891 10 H 0.060 0.940 11 C 0.030 3.970 12 N -0.141 5.141 13 H 0.304 0.696 14 N -0.176 5.176 15 C -0.153 4.153 16 C -0.310 4.310 17 C -0.059 4.059 18 C -0.112 4.112 19 C -0.088 4.088 20 C -0.209 4.209 21 C -0.225 4.225 22 H 0.081 0.919 23 H 0.176 0.824 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.111 0.889 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.358 -5.142 0.541 5.682 hybrid contribution 0.878 0.784 -0.251 1.203 sum 3.235 -4.358 0.290 5.435 Atomic orbital electron populations 1.68733 1.06692 1.27588 1.52303 1.24935 0.94782 1.00059 0.94344 0.86253 0.79322 0.81402 0.78818 1.19910 1.21115 1.20056 1.21156 0.93617 0.89142 1.48173 0.91202 1.17287 0.89975 0.91912 0.89890 0.93996 1.21587 0.87489 0.89946 0.98003 1.47425 1.19293 1.33616 1.13730 0.69584 1.77111 1.24911 1.18598 0.97028 1.23193 0.94479 0.98132 0.99462 1.19625 1.03243 1.10394 0.97731 1.19614 0.92496 0.96170 0.97585 1.21048 0.96403 1.00503 0.93271 1.21394 1.00334 0.96034 0.91023 1.22822 0.94878 1.02820 1.00336 1.22952 0.99966 0.94628 1.04987 0.91886 0.82442 0.92922 0.93272 0.91181 0.93250 0.88936 0.89989 0.89940 0.89672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -23.73 9.46 55.43 0.52 -23.21 16 2 C 0.06 1.47 5.31 -17.82 -0.09 1.38 16 3 Si 0.91 20.48 29.54 -169.99 -5.02 15.45 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.48 -12.24 8.32 -34.44 -0.29 -12.53 16 8 H 0.07 1.74 7.75 -52.49 -0.41 1.34 16 9 C 0.13 3.06 2.28 -92.54 -0.21 2.85 16 10 H 0.04 1.07 8.03 -51.93 -0.42 0.65 16 11 C 0.17 4.03 5.95 -82.26 -0.49 3.54 16 12 N -0.42 -10.66 6.61 33.51 0.22 -10.44 16 13 H 0.44 11.33 6.15 -182.49 -1.12 10.21 16 14 N -0.35 -8.50 12.71 30.59 0.39 -8.11 16 15 C 0.03 0.68 11.98 -17.40 -0.21 0.47 16 16 C -0.30 -6.62 5.89 -105.02 -0.62 -7.24 16 17 C -0.02 -0.37 6.25 -27.69 -0.17 -0.54 16 18 C -0.07 -1.37 5.58 -26.50 -0.15 -1.52 16 19 C -0.09 -1.72 1.25 -154.48 -0.19 -1.91 16 20 C -0.17 -2.98 9.86 -26.82 -0.26 -3.25 16 21 C -0.19 -3.24 9.94 -26.85 -0.27 -3.50 16 22 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 23 H 0.16 2.79 8.06 -52.49 -0.42 2.37 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.07 1.38 8.05 -51.93 -0.42 0.97 16 27 H 0.05 0.77 8.11 -51.93 -0.42 0.35 16 28 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.08 1.48 8.13 -51.93 -0.42 1.05 16 LS Contribution 255.54 15.07 3.85 3.85 Total: -1.00 -27.09 255.54 -7.87 -34.96 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -4.88 Total: 9.74 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -2.95 Total: -22.25 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 1.13 Total: -41.75 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.09 -7.87 -34.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260980969.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.079 kcal (2) G-P(sol) polarization free energy of solvation -27.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds