Wall clock time and date at job start Mon Mar 30 2020 02:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00012 * 2 1 4 4 H 1.48503 * 109.47093 * 95.31297 * 3 2 1 5 5 H 1.48506 * 109.47184 * 215.31009 * 3 2 1 6 6 H 1.48497 * 109.47126 * 335.31122 * 3 2 1 7 7 C 1.37883 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99907 * 355.20299 * 7 2 1 9 9 C 1.50699 * 120.00159 * 175.21155 * 7 2 1 10 10 H 1.09003 * 109.81464 * 5.08431 * 9 7 2 11 11 C 1.51020 * 109.82771 * 125.95790 * 9 7 2 12 12 N 1.34403 * 127.51570 * 287.08043 * 11 9 7 13 13 H 0.96992 * 126.11222 * 359.73557 * 12 11 9 14 14 N 1.40256 * 107.77473 * 179.70914 * 12 11 9 15 15 C 1.30975 * 108.24907 * 0.15295 * 14 12 11 16 16 C 1.35580 * 124.46339 * 107.02377 * 11 9 7 17 17 C 1.50774 * 125.24963 * 0.54618 * 16 11 9 18 18 C 1.53295 * 109.18230 * 341.61851 * 17 16 11 19 19 C 1.53310 * 109.22701 * 46.92853 * 18 17 16 20 20 C 1.52734 * 117.94946 * 80.89733 * 19 18 17 21 21 C 1.52755 * 117.94146 * 149.99728 * 19 18 17 22 22 H 0.96999 * 120.00111 * 0.02562 * 1 2 3 23 23 H 1.08000 * 125.91073 * 180.02562 * 15 14 12 24 24 H 1.08996 * 109.52462 * 101.53249 * 17 16 11 25 25 H 1.08997 * 109.52224 * 221.70826 * 17 16 11 26 26 H 1.09004 * 109.51471 * 166.81825 * 18 17 16 27 27 H 1.08993 * 109.51589 * 286.97911 * 18 17 16 28 28 H 1.09008 * 117.50469 * 215.34514 * 20 19 18 29 29 H 1.09000 * 117.50916 * 0.40121 * 20 19 18 30 30 H 1.09000 * 117.50393 * 359.57315 * 21 19 18 31 31 H 1.09001 * 117.50894 * 144.60728 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6088 1.9815 1.3941 5 1 3.4861 1.4751 -0.8093 6 1 1.3949 2.6824 -0.5848 7 6 2.0045 -1.1941 -0.0005 8 1 1.4674 -2.1278 0.0773 9 6 3.5076 -1.1963 -0.1095 10 1 3.8811 -0.1725 -0.0878 11 6 4.1029 -1.9831 1.0339 12 7 4.1801 -1.6190 2.3254 13 1 3.8612 -0.7849 2.7042 14 7 4.8035 -2.6609 3.0275 15 6 5.0910 -3.6143 2.1767 16 6 4.6617 -3.2122 0.9106 17 6 4.7905 -3.9842 -0.3781 18 6 3.8158 -3.4067 -1.4108 19 6 3.9335 -1.8781 -1.4164 20 6 5.0835 -1.2516 -2.2023 21 6 3.6492 -1.1432 -2.7251 22 1 -0.4850 0.8400 -0.0004 23 1 5.5757 -4.5498 2.4137 24 1 5.8104 -3.8998 -0.7530 25 1 4.5528 -5.0329 -0.1998 26 1 4.0614 -3.7938 -2.3997 27 1 2.7970 -3.6927 -1.1497 28 1 5.5399 -0.3498 -1.7939 29 1 5.7610 -1.9255 -2.7267 30 1 3.3831 -1.7459 -3.5934 31 1 3.1615 -0.1705 -2.6605 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260980971.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:18 Heat of formation + Delta-G solvation = 84.307793 kcal Electronic energy + Delta-G solvation = -14974.875916 eV Core-core repulsion = 12643.927146 eV Total energy + Delta-G solvation = -2330.948770 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.71269 -37.75493 -33.07865 -32.69516 -31.23126 -28.97058 -27.19655 -24.09654 -22.30453 -21.45963 -20.86134 -19.68768 -17.42961 -16.80231 -16.58123 -14.84570 -14.38948 -14.01553 -13.69667 -13.22201 -13.07426 -12.85594 -12.35649 -12.03376 -11.63422 -11.30852 -11.06621 -10.83351 -10.67392 -10.38524 -9.85683 -9.84360 -9.59230 -9.30163 -8.91852 -8.74135 -8.52802 -7.45664 -6.26865 -4.27703 2.75301 3.08264 3.17525 3.21015 3.52004 3.65096 4.19590 4.56873 5.02702 5.32329 5.46551 5.53242 5.63550 5.81922 5.86961 6.02601 6.15166 6.22362 6.30500 6.37244 6.46302 6.54452 6.60359 6.70340 6.82054 6.90351 7.09631 7.19045 7.41367 7.47642 8.06778 8.33547 8.43833 8.81581 9.32384 10.85709 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.025288 B = 0.014478 C = 0.011217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.996112 B = 1933.564112 C = 2495.607079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.078 3.922 3 Si 0.863 3.137 4 H -0.275 1.275 5 H -0.261 1.261 6 H -0.283 1.283 7 C -0.499 4.499 8 H 0.080 0.920 9 C 0.097 3.903 10 H 0.055 0.945 11 C 0.149 3.851 12 N -0.471 5.471 13 H 0.434 0.566 14 N -0.328 5.328 15 C 0.049 3.951 16 C -0.271 4.271 17 C -0.025 4.025 18 C -0.075 4.075 19 C -0.084 4.084 20 C -0.196 4.196 21 C -0.162 4.162 22 H 0.267 0.733 23 H 0.171 0.829 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.866 -3.155 -2.428 9.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.125 4.125 3 Si 0.690 3.310 4 H -0.201 1.201 5 H -0.186 1.186 6 H -0.209 1.209 7 C -0.537 4.537 8 H 0.098 0.902 9 C 0.076 3.924 10 H 0.072 0.928 11 C 0.017 3.983 12 N -0.176 5.176 13 H 0.276 0.724 14 N -0.150 5.150 15 C -0.137 4.137 16 C -0.282 4.282 17 C -0.064 4.064 18 C -0.112 4.112 19 C -0.085 4.085 20 C -0.233 4.233 21 C -0.199 4.199 22 H 0.077 0.923 23 H 0.188 0.812 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.748 -2.690 -1.180 9.228 hybrid contribution 0.071 1.132 -0.555 1.262 sum 8.819 -1.558 -1.735 9.122 Atomic orbital electron populations 1.69861 1.06138 1.27206 1.49191 1.25062 0.94727 0.98501 0.94252 0.87090 0.80528 0.84332 0.79034 1.20073 1.18594 1.20894 1.20692 0.87272 0.94994 1.50709 0.90197 1.17832 0.96278 0.93116 0.85147 0.92764 1.21809 0.93584 0.95962 0.86908 1.45930 1.48442 1.17196 1.06056 0.72364 1.77233 1.19334 0.97912 1.20545 1.23457 1.00313 0.98328 0.91554 1.19702 1.14796 0.97899 0.95842 1.19716 0.98452 0.96995 0.91217 1.21066 1.00192 0.92552 0.97428 1.21480 0.99413 0.94151 0.93473 1.23029 0.91673 1.02737 1.05865 1.22759 0.97315 1.02423 0.97445 0.92271 0.81236 0.92670 0.92324 0.92850 0.90835 0.90049 0.89824 0.89679 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 13.96 55.43 0.77 -24.76 16 2 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.86 19.76 27.25 -169.99 -4.63 15.13 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.26 -5.69 6.39 56.52 0.36 -5.33 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.50 -12.97 8.63 -34.44 -0.30 -13.27 16 8 H 0.08 2.34 8.03 -52.48 -0.42 1.91 16 9 C 0.10 2.15 2.22 -92.54 -0.21 1.95 16 10 H 0.05 1.22 4.44 -51.93 -0.23 0.99 16 11 C 0.15 3.17 6.35 -82.26 -0.52 2.65 16 12 N -0.47 -9.71 7.35 33.51 0.25 -9.47 16 13 H 0.43 8.24 8.96 -182.49 -1.64 6.61 16 14 N -0.33 -6.58 12.71 30.59 0.39 -6.19 16 15 C 0.05 0.89 11.98 -17.41 -0.21 0.68 16 16 C -0.27 -5.25 5.89 -105.02 -0.62 -5.87 16 17 C -0.03 -0.42 6.25 -27.69 -0.17 -0.59 16 18 C -0.07 -1.33 5.59 -26.42 -0.15 -1.47 16 19 C -0.08 -1.64 1.29 -154.38 -0.20 -1.84 16 20 C -0.20 -3.36 9.94 -26.84 -0.27 -3.62 16 21 C -0.16 -3.01 9.87 -26.83 -0.26 -3.27 16 22 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 23 H 0.17 2.41 8.06 -52.49 -0.42 1.99 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.81 8.11 -51.93 -0.42 0.39 16 27 H 0.07 1.44 8.01 -51.93 -0.42 1.03 16 28 H 0.08 1.40 8.13 -51.92 -0.42 0.98 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 LS Contribution 258.11 15.07 3.89 3.89 Total: -1.00 -28.86 258.11 -7.59 -36.45 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.26 Total: 7.62 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -3.00 Total: -22.67 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 1.41 Total: -40.41 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.63 Total: 15.13 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.86 -7.59 -36.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260980971.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.759 kcal (2) G-P(sol) polarization free energy of solvation -28.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds