Wall clock time and date at job start Mon Mar 30 2020 02:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31792 * 119.09359 * 2 1 4 4 C 1.32430 * 120.79972 * 179.97438 * 3 2 1 5 5 C 1.38460 * 118.99169 * 359.75758 * 4 3 2 6 6 C 1.38519 * 118.59041 * 0.48801 * 5 4 3 7 7 C 1.50700 * 120.48696 * 179.77902 * 6 5 4 8 8 N 1.31787 * 119.08902 * 179.97438 * 2 1 3 9 9 C 1.51059 * 109.86689 * 179.82830 * 5 4 3 10 10 H 1.09005 * 110.18553 * 102.22503 * 9 5 4 11 11 C 1.50697 * 110.44596 * 224.29970 * 9 5 4 12 12 H 1.08005 * 120.00051 * 31.27113 * 11 9 5 13 13 C 1.37877 * 119.99809 * 211.26434 * 11 9 5 14 14 N 1.31526 * 119.99635 * 184.57058 * 13 11 9 15 15 Si 1.86793 * 120.00449 * 4.57490 * 13 11 9 16 16 H 1.48501 * 109.47332 * 84.80754 * 15 13 11 17 17 H 1.48501 * 109.47387 * 204.81187 * 15 13 11 18 18 H 1.48507 * 109.46993 * 324.81348 * 15 13 11 19 19 C 1.54410 * 105.21220 * 343.33056 * 9 5 4 20 20 C 1.51163 * 131.30311 * 180.02562 * 4 3 2 21 21 H 1.09002 * 109.46708 * 270.02174 * 1 2 3 22 22 H 1.08998 * 109.47123 * 30.01758 * 1 2 3 23 23 H 1.09001 * 109.47160 * 150.02020 * 1 2 3 24 24 H 1.08996 * 109.47230 * 269.72262 * 7 6 5 25 25 H 1.08999 * 109.46996 * 29.72079 * 7 6 5 26 26 H 1.09001 * 109.47157 * 149.71757 * 7 6 5 27 27 H 0.96998 * 119.99802 * 180.02562 * 14 13 11 28 28 H 1.09001 * 110.81003 * 267.68184 * 19 9 5 29 29 H 1.09002 * 110.98089 * 144.24014 * 19 9 5 30 30 H 1.08993 * 110.30240 * 315.97426 * 20 4 3 31 31 H 1.09002 * 110.29760 * 78.01527 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1478 1.1516 0.0000 4 6 3.4715 1.1911 0.0005 5 6 4.1784 0.0005 0.0062 6 6 3.4709 -1.1904 0.0007 7 6 4.1970 -2.5110 0.0016 8 7 2.1477 -1.1516 0.0005 9 6 5.6620 0.2843 0.0014 10 1 6.0742 0.1482 1.0013 11 6 6.3669 -0.6152 -0.9809 12 1 5.8565 -0.9448 -1.8738 13 6 7.6635 -1.0173 -0.7397 14 7 8.3096 -1.7278 -1.6385 15 14 8.5026 -0.5534 0.8634 16 1 8.1472 -1.5425 1.9125 17 1 9.9746 -0.5464 0.6678 18 1 8.0527 0.7978 1.2845 19 6 5.7909 1.7598 -0.4351 20 6 4.4350 2.3558 0.0011 21 1 -0.3633 0.0004 1.0277 22 1 -0.3633 0.8898 -0.5141 23 1 -0.3633 -0.8902 -0.5135 24 1 4.3724 -2.8299 -1.0259 25 1 5.1518 -2.4003 0.5156 26 1 3.5921 -3.2579 0.5156 27 1 9.2217 -2.0110 -1.4687 28 1 5.9171 1.8345 -1.5152 29 1 6.6144 2.2500 0.0842 30 1 4.1099 3.1159 -0.7092 31 1 4.5120 2.7823 1.0013 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261002990.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:19 Heat of formation + Delta-G solvation = 30.162594 kcal Electronic energy + Delta-G solvation = -14635.730857 eV Core-core repulsion = 12302.434174 eV Total energy + Delta-G solvation = -2333.296682 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.79278 -36.61087 -34.03950 -32.53948 -31.03482 -29.06664 -27.90733 -26.70288 -23.76470 -21.75277 -20.85498 -19.50870 -17.42728 -16.95764 -15.11682 -14.78556 -14.45923 -14.03703 -13.30201 -12.89431 -12.69340 -12.53229 -12.36891 -12.16487 -11.97767 -11.76512 -11.41347 -11.28748 -11.03433 -10.65740 -10.37041 -10.07958 -9.70446 -9.57596 -9.43722 -8.70006 -8.53801 -8.06715 -6.20089 -4.19840 1.61522 1.69994 3.18530 3.27635 3.29054 4.23451 4.29338 4.30287 4.55449 5.04165 5.21515 5.41087 5.52618 5.68912 5.71494 5.76759 5.80212 5.96798 6.17448 6.21720 6.27179 6.40027 6.49164 6.58160 6.73155 6.81720 6.89738 7.09496 7.18819 7.56054 7.71490 8.38467 8.73469 8.83481 9.40368 10.92351 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.037928 B = 0.010306 C = 0.008894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.070030 B = 2716.230337 C = 3147.446805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.289 3.711 3 N -0.526 5.526 4 C 0.145 3.855 5 C -0.156 4.156 6 C 0.189 3.811 7 C -0.090 4.090 8 N -0.527 5.527 9 C 0.054 3.946 10 H 0.052 0.948 11 C -0.505 4.505 12 H 0.076 0.924 13 C 0.076 3.924 14 N -0.893 5.893 15 Si 0.870 3.130 16 H -0.274 1.274 17 H -0.287 1.287 18 H -0.264 1.264 19 C -0.117 4.117 20 C -0.070 4.070 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.266 0.734 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.014 3.888 4.619 10.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.021 3.979 3 N -0.242 5.242 4 C 0.000 4.000 5 C -0.161 4.161 6 C 0.044 3.956 7 C -0.147 4.147 8 N -0.243 5.243 9 C 0.034 3.966 10 H 0.070 0.930 11 C -0.543 4.543 12 H 0.094 0.906 13 C -0.126 4.126 14 N -0.530 5.530 15 Si 0.697 3.303 16 H -0.200 1.200 17 H -0.213 1.213 18 H -0.189 1.189 19 C -0.155 4.155 20 C -0.108 4.108 21 H 0.094 0.906 22 H 0.096 0.904 23 H 0.098 0.902 24 H 0.103 0.897 25 H 0.108 0.892 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.823 3.775 4.565 10.627 hybrid contribution 1.425 0.211 0.764 1.631 sum -7.398 3.987 5.328 9.951 Atomic orbital electron populations 1.20384 0.86508 1.03327 1.02974 1.22874 0.97445 0.83413 0.94164 1.67372 1.09631 1.30837 1.16348 1.22269 0.89181 0.96793 0.91795 1.22488 1.00807 0.93813 0.98947 1.21282 0.88197 0.96140 0.89952 1.20662 0.99418 0.90771 1.03860 1.68086 1.09603 1.30245 1.16380 1.18641 0.86824 0.93424 0.97737 0.92991 1.20761 0.97816 1.28903 1.06797 0.90633 1.25016 0.96882 0.94406 0.96329 1.69887 1.11941 1.37009 1.34134 0.86963 0.78922 0.79781 0.84597 1.19997 1.21305 1.18889 1.22722 0.93558 0.97187 1.02072 1.21074 0.93429 0.94247 1.02077 0.90557 0.90351 0.90229 0.89699 0.89198 0.92146 0.92418 0.90465 0.91452 0.90516 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.32 36.00 0.37 -0.62 16 2 C 0.29 5.43 7.64 -157.20 -1.20 4.23 16 3 N -0.53 -10.44 10.34 -6.86 -0.07 -10.51 16 4 C 0.15 2.94 7.37 -82.03 -0.60 2.34 16 5 C -0.16 -3.39 5.54 -104.26 -0.58 -3.97 16 6 C 0.19 3.99 6.80 -82.25 -0.56 3.43 16 7 C -0.09 -1.75 9.12 36.01 0.33 -1.42 16 8 N -0.53 -10.64 10.28 -7.00 -0.07 -10.71 16 9 C 0.05 1.19 2.15 -92.01 -0.20 1.00 16 10 H 0.05 1.16 5.48 -51.93 -0.28 0.88 16 11 C -0.51 -13.00 6.96 -34.44 -0.24 -13.23 16 12 H 0.08 2.17 8.06 -52.48 -0.42 1.75 16 13 C 0.08 2.02 5.47 -17.81 -0.10 1.93 16 14 N -0.89 -25.46 13.96 55.43 0.77 -24.69 16 15 Si 0.87 19.88 26.99 -169.99 -4.59 15.29 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.26 -5.70 6.75 56.52 0.38 -5.32 16 19 C -0.12 -2.28 6.58 -25.26 -0.17 -2.44 16 20 C -0.07 -1.22 6.76 -26.92 -0.18 -1.40 16 21 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 22 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 23 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 25 H 0.09 1.84 7.17 -51.93 -0.37 1.47 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.08 1.56 7.90 -51.93 -0.41 1.15 16 29 H 0.07 1.22 8.03 -51.93 -0.42 0.80 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 259.19 15.07 3.91 3.91 Total: -1.00 -29.08 259.19 -7.20 -36.28 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -4.02 Total: 0.60 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -3.13 Total: -10.17 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.63 Total: -45.91 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.59 Total: 15.29 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.08 -7.20 -36.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261002990.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.444 kcal (2) G-P(sol) polarization free energy of solvation -29.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds