Wall clock time and date at job start Mon Mar 30 2020 02:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31792 * 119.09359 * 2 1 4 4 C 1.32430 * 120.79972 * 179.97438 * 3 2 1 5 5 C 1.38460 * 118.99169 * 359.75758 * 4 3 2 6 6 C 1.38519 * 118.59041 * 0.48801 * 5 4 3 7 7 C 1.50700 * 120.48696 * 179.77902 * 6 5 4 8 8 N 1.31787 * 119.08902 * 179.97438 * 2 1 3 9 9 C 1.51059 * 109.86689 * 179.82830 * 5 4 3 10 10 H 1.09005 * 110.18553 * 102.22503 * 9 5 4 11 11 C 1.50697 * 110.44596 * 224.29970 * 9 5 4 12 12 H 1.08005 * 120.00051 * 31.27113 * 11 9 5 13 13 C 1.37877 * 119.99809 * 211.26434 * 11 9 5 14 14 N 1.31526 * 119.99635 * 184.57058 * 13 11 9 15 15 Si 1.86793 * 120.00449 * 4.57490 * 13 11 9 16 16 H 1.48501 * 109.47332 * 84.80754 * 15 13 11 17 17 H 1.48501 * 109.47387 * 204.81187 * 15 13 11 18 18 H 1.48507 * 109.46993 * 324.81348 * 15 13 11 19 19 C 1.54410 * 105.21220 * 343.33056 * 9 5 4 20 20 C 1.51163 * 131.30311 * 180.02562 * 4 3 2 21 21 H 1.09002 * 109.46708 * 270.02174 * 1 2 3 22 22 H 1.08998 * 109.47123 * 30.01758 * 1 2 3 23 23 H 1.09001 * 109.47160 * 150.02020 * 1 2 3 24 24 H 1.08996 * 109.47230 * 269.72262 * 7 6 5 25 25 H 1.08999 * 109.46996 * 29.72079 * 7 6 5 26 26 H 1.09001 * 109.47157 * 149.71757 * 7 6 5 27 27 H 0.96998 * 119.99802 * 180.02562 * 14 13 11 28 28 H 1.09001 * 110.81003 * 267.68184 * 19 9 5 29 29 H 1.09002 * 110.98089 * 144.24014 * 19 9 5 30 30 H 1.08993 * 110.30240 * 315.97426 * 20 4 3 31 31 H 1.09002 * 110.29760 * 78.01527 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1478 1.1516 0.0000 4 6 3.4715 1.1911 0.0005 5 6 4.1784 0.0005 0.0062 6 6 3.4709 -1.1904 0.0007 7 6 4.1970 -2.5110 0.0016 8 7 2.1477 -1.1516 0.0005 9 6 5.6620 0.2843 0.0014 10 1 6.0742 0.1482 1.0013 11 6 6.3669 -0.6152 -0.9809 12 1 5.8565 -0.9448 -1.8738 13 6 7.6635 -1.0173 -0.7397 14 7 8.3096 -1.7278 -1.6385 15 14 8.5026 -0.5534 0.8634 16 1 8.1472 -1.5425 1.9125 17 1 9.9746 -0.5464 0.6678 18 1 8.0527 0.7978 1.2845 19 6 5.7909 1.7598 -0.4351 20 6 4.4350 2.3558 0.0011 21 1 -0.3633 0.0004 1.0277 22 1 -0.3633 0.8898 -0.5141 23 1 -0.3633 -0.8902 -0.5135 24 1 4.3724 -2.8299 -1.0259 25 1 5.1518 -2.4003 0.5156 26 1 3.5921 -3.2579 0.5156 27 1 9.2217 -2.0110 -1.4687 28 1 5.9171 1.8345 -1.5152 29 1 6.6144 2.2500 0.0842 30 1 4.1099 3.1159 -0.7092 31 1 4.5120 2.7823 1.0013 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261002990.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:19 Heat of formation + Delta-G solvation = 12.579139 kcal Electronic energy + Delta-G solvation = -14636.493332 eV Core-core repulsion = 12302.434174 eV Total energy + Delta-G solvation = -2334.059158 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.32589 -38.18335 -35.61495 -34.45909 -32.50559 -30.64362 -29.46176 -28.23844 -25.53527 -23.30633 -22.35226 -21.14695 -19.26963 -18.62180 -16.66088 -16.49683 -16.07730 -15.54672 -14.98778 -14.39190 -14.23693 -14.09359 -13.88127 -13.74913 -13.25774 -13.14853 -12.94846 -12.86267 -12.69670 -12.35667 -11.93668 -11.84348 -11.43988 -11.32454 -11.08805 -10.70263 -10.09383 -9.68720 -8.25054 -6.28459 0.07454 0.11734 1.38958 1.41121 1.50302 2.37395 2.75155 2.85592 3.08474 3.11149 3.66202 3.87063 4.04534 4.25560 4.30880 4.54889 4.64649 4.69770 4.72717 4.77215 4.83832 4.84721 5.01146 5.07319 5.17506 5.24242 5.33613 5.46488 5.62932 5.67149 6.13096 6.34727 6.73263 7.20354 7.34511 8.91110 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.037928 B = 0.010306 C = 0.008894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.070030 B = 2716.230337 C = 3147.446805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.284 3.716 3 N -0.533 5.533 4 C 0.144 3.856 5 C -0.192 4.192 6 C 0.174 3.826 7 C -0.082 4.082 8 N -0.538 5.538 9 C 0.052 3.948 10 H 0.055 0.945 11 C -0.495 4.495 12 H 0.028 0.972 13 C 0.023 3.977 14 N -0.944 5.944 15 Si 0.930 3.070 16 H -0.269 1.269 17 H -0.290 1.290 18 H -0.236 1.236 19 C -0.114 4.114 20 C -0.061 4.061 21 H 0.098 0.902 22 H 0.094 0.906 23 H 0.091 0.909 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.266 0.734 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.273 5.644 6.384 12.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.017 3.983 3 N -0.249 5.249 4 C -0.001 4.001 5 C -0.196 4.196 6 C 0.029 3.971 7 C -0.139 4.139 8 N -0.254 5.254 9 C 0.032 3.968 10 H 0.073 0.927 11 C -0.533 4.533 12 H 0.046 0.954 13 C -0.175 4.175 14 N -0.584 5.584 15 Si 0.754 3.246 16 H -0.194 1.194 17 H -0.216 1.216 18 H -0.159 1.159 19 C -0.152 4.152 20 C -0.098 4.098 21 H 0.117 0.883 22 H 0.112 0.888 23 H 0.110 0.890 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.111 5.545 6.336 13.157 hybrid contribution 1.680 -0.375 0.135 1.726 sum -8.431 5.170 6.471 11.819 Atomic orbital electron populations 1.20578 0.82767 1.04720 1.04794 1.23962 0.99656 0.82803 0.91880 1.67549 1.09234 1.31104 1.16987 1.22780 0.89746 0.97276 0.90343 1.22535 1.00615 0.94881 1.01557 1.21506 0.89019 0.96491 0.90042 1.20546 0.99110 0.91294 1.02935 1.68180 1.08979 1.31071 1.17202 1.18619 0.87038 0.94451 0.96683 0.92746 1.20788 0.97695 1.28956 1.05815 0.95363 1.25786 0.97584 0.94430 0.99686 1.70039 1.12445 1.39269 1.36619 0.85991 0.77403 0.80951 0.80271 1.19425 1.21641 1.15945 1.22604 0.95869 0.95330 1.01419 1.21108 0.90959 0.93501 1.04261 0.88320 0.88752 0.89028 0.91259 0.90682 0.89712 0.92510 0.91999 0.89473 0.88328 0.87106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.67 10.32 71.23 0.73 -0.94 16 2 C 0.28 10.08 7.64 138.75 1.06 11.14 16 3 N -0.53 -19.88 10.34 -175.62 -1.82 -21.70 16 4 C 0.14 5.57 7.37 42.67 0.31 5.89 16 5 C -0.19 -8.22 5.54 -19.63 -0.11 -8.33 16 6 C 0.17 7.34 6.80 42.54 0.29 7.63 16 7 C -0.08 -3.25 9.12 71.24 0.65 -2.60 16 8 N -0.54 -21.14 10.28 -176.06 -1.81 -22.95 16 9 C 0.05 2.28 2.15 -11.69 -0.03 2.25 16 10 H 0.05 2.34 5.48 -2.38 -0.01 2.33 16 11 C -0.49 -26.18 6.96 25.60 0.18 -26.01 16 12 H 0.03 1.72 8.06 -2.91 -0.02 1.69 16 13 C 0.02 1.24 5.47 84.65 0.46 1.70 16 14 N -0.94 -55.82 13.96 21.45 0.30 -55.52 16 15 Si 0.93 40.56 26.99 68.60 1.85 42.41 16 16 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 17 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.24 -9.17 6.75 99.48 0.67 -8.50 16 19 C -0.11 -4.20 6.58 31.55 0.21 -3.99 16 20 C -0.06 -1.90 6.76 30.47 0.21 -1.70 16 21 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 22 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 25 H 0.07 3.17 7.17 -2.39 -0.02 3.15 16 26 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 27 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 28 H 0.06 2.45 7.90 -2.39 -0.02 2.43 16 29 H 0.09 2.86 8.03 -2.39 -0.02 2.84 16 30 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -63.92 259.19 3.58 -60.34 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 1.09 Total: 12.37 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: 3.97 Total: -14.96 kcal Atomic # 7 Polarization: -96.84 SS G_CDS: -3.33 Total: -100.17 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 1.85 Total: 42.41 kcal Total: -63.92 3.58 -60.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261002990.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.916 kcal (2) G-P(sol) polarization free energy of solvation -63.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds