Wall clock time and date at job start Mon Mar 30 2020 02:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99818 * 2 1 4 4 H 1.48501 * 109.46996 * 239.99467 * 3 2 1 5 5 H 1.48494 * 109.47460 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46944 * 120.00283 * 3 2 1 7 7 C 1.37874 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99997 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00117 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.29794 * 59.30317 * 9 7 2 11 11 C 1.54458 * 110.33398 * 181.46128 * 9 7 2 12 12 C 1.54486 * 101.89035 * 144.54268 * 11 9 7 13 13 C 1.51184 * 104.93887 * 334.46147 * 12 11 9 14 14 C 1.34429 * 110.52589 * 16.84414 * 13 12 11 15 15 N 1.34493 * 107.85731 * 180.02562 * 14 13 12 16 16 C 1.30407 * 109.30123 * 359.97438 * 15 14 13 17 17 N 1.34986 * 108.70795 * 359.97438 * 16 15 14 18 18 C 1.46495 * 126.42368 * 180.02562 * 17 16 15 19 19 C 1.52999 * 117.49675 * 8.75206 * 18 17 16 20 20 C 1.53002 * 117.49711 * 300.09731 * 18 17 16 21 21 H 0.97000 * 119.99676 * 0.02562 * 1 2 3 22 22 H 1.08998 * 110.94467 * 262.68364 * 11 9 7 23 23 H 1.08999 * 110.94825 * 26.35361 * 11 9 7 24 24 H 1.08995 * 110.35234 * 93.33435 * 12 11 9 25 25 H 1.09004 * 110.34553 * 215.60256 * 12 11 9 26 26 H 1.08005 * 125.64644 * 180.02562 * 16 15 14 27 27 H 1.08997 * 115.55315 * 154.42183 * 18 17 16 28 28 H 1.09008 * 117.50137 * 0.02562 * 19 18 17 29 29 H 1.09003 * 117.50002 * 145.01947 * 19 18 17 30 30 H 1.09005 * 117.49778 * 214.97789 * 20 18 17 31 31 H 1.09002 * 117.49922 * 359.97304 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6097 -2.5654 -0.8794 11 6 2.2365 -3.6879 0.0358 12 6 1.4728 -4.7079 0.9092 13 6 0.5536 -3.8722 1.7708 14 6 0.4280 -2.6340 1.2628 15 7 -0.3964 -1.9398 2.0673 16 6 -0.7832 -2.7039 3.0507 17 7 -0.2146 -3.9194 2.9042 18 6 -0.3859 -5.0725 3.7913 19 6 -1.4484 -4.9689 4.8873 20 6 0.0368 -4.9086 5.2526 21 1 -0.4850 0.8401 -0.0004 22 1 2.4073 -4.0832 -0.9656 23 1 3.1775 -3.3999 0.5046 24 1 0.8929 -5.3849 0.2820 25 1 2.1690 -5.2698 1.5320 26 1 -1.4491 -2.4128 3.8497 27 1 -0.2328 -6.0478 3.3294 28 1 -2.0203 -4.0429 4.9480 29 1 -1.9941 -5.8762 5.1467 30 1 0.4678 -5.7762 5.7522 31 1 0.4428 -3.9429 5.5538 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261024406.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:08 Heat of formation + Delta-G solvation = 105.484918 kcal Electronic energy + Delta-G solvation = -14573.633874 eV Core-core repulsion = 12243.603412 eV Total energy + Delta-G solvation = -2330.030461 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.26984 -37.26855 -35.22631 -32.24231 -30.85965 -27.45720 -26.58616 -23.40196 -22.90795 -22.52093 -20.70064 -18.77625 -18.41309 -16.61758 -16.13824 -15.02755 -14.60864 -14.26225 -13.60474 -13.22913 -13.06393 -12.33183 -11.93227 -11.73617 -11.64730 -11.35965 -10.88140 -10.85009 -10.68121 -10.60209 -10.40724 -9.94120 -9.39650 -9.00740 -8.34860 -8.26164 -8.11559 -6.92358 -5.70872 -3.78529 2.85808 3.28804 3.47054 3.51326 3.53201 3.82125 4.49926 4.58083 4.66962 4.77176 4.84207 5.16396 5.34540 5.50192 5.59531 5.69130 5.81828 5.84627 5.95235 5.97694 6.19433 6.40850 6.73662 6.84611 7.09444 7.15806 7.44275 7.82212 7.91462 8.13081 8.37066 8.56558 9.18627 9.46087 9.84217 11.34934 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.038845 B = 0.009088 C = 0.008027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.638719 B = 3080.400976 C = 3487.388989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.074 3.926 3 Si 0.884 3.116 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.531 4.531 8 H 0.054 0.946 9 C 0.114 3.886 10 H 0.041 0.959 11 C -0.108 4.108 12 C -0.018 4.018 13 C -0.122 4.122 14 C 0.088 3.912 15 N -0.426 5.426 16 C 0.143 3.857 17 N -0.427 5.427 18 C 0.069 3.931 19 C -0.179 4.179 20 C -0.186 4.186 21 H 0.257 0.743 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.050 0.950 26 H 0.187 0.813 27 H 0.129 0.871 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.066 -11.165 7.628 13.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.132 4.132 3 Si 0.712 3.288 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.569 4.569 8 H 0.072 0.928 9 C 0.095 3.905 10 H 0.058 0.942 11 C -0.146 4.146 12 C -0.057 4.057 13 C -0.233 4.233 14 C -0.043 4.043 15 N -0.142 5.142 16 C -0.136 4.136 17 N -0.113 5.113 18 C -0.037 4.037 19 C -0.217 4.217 20 C -0.224 4.224 21 H 0.067 0.933 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.204 0.796 27 H 0.147 0.853 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.516 -10.292 7.570 12.866 hybrid contribution 0.459 0.122 0.600 0.765 sum -1.057 -10.170 8.171 13.088 Atomic orbital electron populations 1.70008 1.05471 1.25961 1.46461 1.24941 0.94691 0.98567 0.95002 0.86821 0.79679 0.84096 0.78219 1.20509 1.21493 1.20648 1.20868 0.92287 0.90003 1.53759 0.92792 1.17812 0.90638 0.92935 0.89118 0.94157 1.22456 0.98953 0.95569 0.97656 1.20342 0.94460 0.96231 0.94623 1.21721 1.06303 1.02251 0.92987 1.22178 0.95953 0.87681 0.98455 1.69985 1.12135 1.30269 1.01858 1.24950 1.04838 0.81098 1.02711 1.44080 1.37403 1.10257 1.19606 1.21757 1.05080 0.90560 0.86291 1.23333 0.92367 1.04343 1.01620 1.23454 0.97307 1.04190 0.97446 0.93296 0.91822 0.91614 0.92046 0.93100 0.79621 0.85290 0.87923 0.87627 0.87875 0.88093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.91 11.87 55.43 0.66 -25.25 16 2 C 0.07 2.18 5.33 -17.82 -0.09 2.08 16 3 Si 0.88 22.50 29.54 -169.99 -5.02 17.48 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 6 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.53 -15.37 8.52 -34.44 -0.29 -15.66 16 8 H 0.05 1.52 7.61 -52.49 -0.40 1.12 16 9 C 0.11 3.02 2.80 -91.83 -0.26 2.77 16 10 H 0.04 1.15 8.14 -51.93 -0.42 0.72 16 11 C -0.11 -2.24 6.63 -25.19 -0.17 -2.41 16 12 C -0.02 -0.33 6.79 -26.87 -0.18 -0.52 16 13 C -0.12 -2.70 7.64 -81.39 -0.62 -3.33 16 14 C 0.09 2.32 6.55 -82.44 -0.54 1.78 16 15 N -0.43 -11.41 10.39 -10.67 -0.11 -11.52 16 16 C 0.14 3.04 11.88 -90.50 -1.08 1.97 16 17 N -0.43 -8.26 3.09 -106.81 -0.33 -8.59 16 18 C 0.07 0.95 6.89 -67.93 -0.47 0.49 16 19 C -0.18 -1.91 9.99 -26.70 -0.27 -2.17 16 20 C -0.19 -2.10 10.40 -26.70 -0.28 -2.38 16 21 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 22 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 23 H 0.07 1.37 7.78 -51.93 -0.40 0.96 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.19 3.16 7.03 -52.48 -0.37 2.79 16 27 H 0.13 1.58 8.14 -51.93 -0.42 1.16 16 28 H 0.10 1.12 6.85 -51.92 -0.36 0.76 16 29 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 262.33 15.07 3.95 3.95 Total: -1.00 -33.99 262.33 -9.14 -43.13 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -4.05 Total: -1.81 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -4.24 Total: -17.39 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.22 Total: -45.36 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.99 -9.14 -43.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261024406.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.611 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds