Wall clock time and date at job start Mon Mar 30 2020 02:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00183 * 2 1 4 4 H 1.48502 * 109.46644 * 272.65044 * 3 2 1 5 5 H 1.48504 * 109.47006 * 32.64511 * 3 2 1 6 6 H 1.48497 * 109.47530 * 152.65043 * 3 2 1 7 7 C 1.37881 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99941 * 9.34492 * 7 2 1 9 9 C 1.50704 * 119.99712 * 189.34290 * 7 2 1 10 10 H 1.08994 * 109.47222 * 303.95491 * 9 7 2 11 11 N 1.46904 * 109.47017 * 63.95759 * 9 7 2 12 12 C 1.46903 * 110.99586 * 198.81060 * 11 9 7 13 13 C 1.52995 * 117.49397 * 137.86181 * 12 11 9 14 14 C 1.52999 * 117.49695 * 206.48307 * 12 11 9 15 15 C 1.50697 * 109.46631 * 183.95577 * 9 7 2 16 16 C 1.38671 * 120.41625 * 106.58933 * 15 9 7 17 17 C 1.38633 * 118.42163 * 180.02562 * 16 15 9 18 18 C 1.38230 * 119.15870 * 359.97438 * 17 16 15 19 19 N 1.31858 * 120.76368 * 0.02562 * 18 17 16 20 20 C 1.31885 * 121.72569 * 359.69910 * 19 18 17 21 21 H 0.96997 * 119.99949 * 0.02562 * 1 2 3 22 22 H 1.00894 * 110.99801 * 74.86004 * 11 9 7 23 23 H 1.08999 * 115.56242 * 352.16873 * 12 11 9 24 24 H 1.09001 * 117.49641 * 214.97599 * 13 12 11 25 25 H 1.08993 * 117.50609 * 359.97438 * 13 12 11 26 26 H 1.09004 * 117.49733 * 359.97438 * 14 12 11 27 27 H 1.08997 * 117.50032 * 145.01793 * 14 12 11 28 28 H 1.08000 * 120.79509 * 359.97230 * 16 15 9 29 29 H 1.08000 * 120.42566 * 180.02562 * 17 16 15 30 30 H 1.08004 * 119.62046 * 179.97438 * 18 17 16 31 31 H 1.08001 * 119.61932 * 180.31298 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4406 2.0787 -1.3986 5 1 1.4757 2.6359 0.7553 6 1 3.5737 1.4247 0.6432 7 6 2.0045 -1.1941 0.0005 8 1 1.4753 -2.1232 -0.1509 9 6 3.4966 -1.2026 0.2124 10 1 3.9728 -0.5638 -0.5313 11 7 3.8029 -0.6998 1.5583 12 6 5.2052 -0.2728 1.6541 13 6 5.4976 1.0289 2.4030 14 6 5.8640 -0.3157 3.0344 15 6 4.0157 -2.6103 0.0719 16 6 4.7348 -2.9844 -1.0532 17 6 5.1924 -4.2901 -1.1399 18 6 4.9191 -5.1694 -0.1090 19 7 4.2320 -4.7787 0.9464 20 6 3.7858 -3.5433 1.0650 21 1 -0.4850 0.8400 -0.0004 22 1 3.5867 -1.3912 2.2605 23 1 5.8285 -0.5081 0.7915 24 1 6.3134 1.6501 2.0330 25 1 4.6496 1.5687 2.8242 26 1 5.2567 -0.6603 3.8714 27 1 6.9206 -0.5793 3.0798 28 1 4.9330 -2.2756 -1.8437 29 1 5.7561 -4.6161 -2.0016 30 1 5.2716 -6.1885 -0.1690 31 1 3.2308 -3.2585 1.9466 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261111857.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:55 Heat of formation + Delta-G solvation = 67.555564 kcal Electronic energy + Delta-G solvation = -14494.562297 eV Core-core repulsion = 12162.887095 eV Total energy + Delta-G solvation = -2331.675201 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.73478 -37.31864 -34.43996 -32.05892 -31.64449 -29.71317 -26.65128 -23.39826 -23.03294 -22.01237 -20.68642 -20.18502 -17.05809 -16.66462 -15.90862 -15.19459 -14.92206 -14.51747 -13.84724 -13.46342 -13.31434 -12.57168 -12.50277 -12.28015 -11.71594 -11.47083 -11.23672 -11.07401 -10.55476 -10.36473 -9.96886 -9.58843 -9.40346 -9.21448 -8.95192 -8.54526 -8.27363 -7.37557 -6.09419 -4.17637 1.64074 1.80646 3.41745 3.51694 3.72724 4.30123 4.32695 4.58079 4.75142 4.91214 5.25128 5.35024 5.38779 5.44403 5.46894 5.56097 5.64634 5.83711 5.95359 6.05173 6.14080 6.25107 6.34050 6.52297 6.56662 6.59431 6.93227 7.21295 7.50855 8.09426 8.13716 8.44298 8.50128 8.92209 9.54844 11.00083 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.023219 B = 0.012488 C = 0.009339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.633440 B = 2241.702184 C = 2997.559976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.095 3.905 3 Si 0.874 3.126 4 H -0.295 1.295 5 H -0.296 1.296 6 H -0.218 1.218 7 C -0.517 4.517 8 H 0.071 0.929 9 C 0.227 3.773 10 H 0.047 0.953 11 N -0.641 5.641 12 C 0.026 3.974 13 C -0.176 4.176 14 C -0.204 4.204 15 C -0.111 4.111 16 C -0.083 4.083 17 C -0.176 4.176 18 C 0.069 3.931 19 N -0.488 5.488 20 C 0.101 3.899 21 H 0.265 0.735 22 H 0.332 0.668 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.145 0.855 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.870 -2.785 0.916 12.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.111 4.111 3 Si 0.701 3.299 4 H -0.222 1.222 5 H -0.222 1.222 6 H -0.140 1.140 7 C -0.555 4.555 8 H 0.089 0.911 9 C 0.119 3.881 10 H 0.065 0.935 11 N -0.272 5.272 12 C -0.085 4.085 13 C -0.214 4.214 14 C -0.242 4.242 15 C -0.115 4.115 16 C -0.110 4.110 17 C -0.196 4.196 18 C -0.088 4.088 19 N -0.196 5.196 20 C -0.056 4.056 21 H 0.074 0.926 22 H 0.153 0.847 23 H 0.105 0.895 24 H 0.101 0.899 25 H 0.113 0.887 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.146 0.854 29 H 0.143 0.857 30 H 0.162 0.838 31 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 11.287 -2.663 1.476 11.690 hybrid contribution 0.822 0.648 -0.792 1.312 sum 12.109 -2.015 0.684 12.294 Atomic orbital electron populations 1.69965 1.06906 1.27466 1.48271 1.24913 0.94378 0.99733 0.92069 0.86870 0.83806 0.82071 0.77185 1.22249 1.22243 1.13998 1.20677 0.88447 0.94998 1.51398 0.91060 1.18728 0.97237 0.84880 0.87235 0.93472 1.61375 1.14579 1.44254 1.07039 1.22443 0.91738 1.00705 0.93634 1.23059 1.02448 0.91032 1.04880 1.23198 1.00489 1.02764 0.97756 1.22084 0.94507 1.00805 0.94104 1.21513 0.95959 0.95972 0.97547 1.22019 1.02441 0.94871 1.00244 1.22522 0.96616 0.99447 0.90228 1.67612 1.09561 1.18054 1.24397 1.22517 0.96288 0.87940 0.98901 0.92594 0.84722 0.89452 0.89882 0.88688 0.88971 0.89798 0.85449 0.85740 0.83801 0.83105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.96 55.43 0.77 -25.87 16 2 C 0.09 2.63 5.45 -17.82 -0.10 2.53 16 3 Si 0.87 21.00 26.85 -169.99 -4.56 16.44 16 4 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.22 -4.83 4.34 56.52 0.25 -4.58 16 7 C -0.52 -13.79 9.18 -34.44 -0.32 -14.10 16 8 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 9 C 0.23 4.92 1.40 -70.01 -0.10 4.82 16 10 H 0.05 1.04 6.67 -51.93 -0.35 0.70 16 11 N -0.64 -12.83 4.62 -102.18 -0.47 -13.30 16 12 C 0.03 0.45 5.16 -67.71 -0.35 0.10 16 13 C -0.18 -2.79 9.63 -26.73 -0.26 -3.04 16 14 C -0.20 -2.99 10.32 -26.73 -0.28 -3.27 16 15 C -0.11 -2.17 4.60 -104.48 -0.48 -2.65 16 16 C -0.08 -1.43 9.81 -39.28 -0.39 -1.82 16 17 C -0.18 -2.63 10.11 -39.44 -0.40 -3.03 16 18 C 0.07 1.08 11.18 -17.54 -0.20 0.89 16 19 N -0.49 -8.98 10.36 -13.25 -0.14 -9.12 16 20 C 0.10 1.94 10.22 -17.55 -0.18 1.76 16 21 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 22 H 0.33 6.40 6.77 -39.30 -0.27 6.13 16 23 H 0.09 1.49 7.83 -51.93 -0.41 1.09 16 24 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 26 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.13 1.98 8.04 -52.49 -0.42 1.56 16 29 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.14 1.78 8.06 -52.48 -0.42 1.35 16 31 H 0.15 2.85 6.86 -52.49 -0.36 2.49 16 LS Contribution 262.55 15.07 3.96 3.96 Total: -1.00 -29.79 262.55 -7.52 -37.31 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -4.05 Total: 8.40 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -3.03 Total: -17.82 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 0.16 Total: -48.29 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.56 Total: 16.44 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.79 -7.52 -37.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111857.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.870 kcal (2) G-P(sol) polarization free energy of solvation -29.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds