Wall clock time and date at job start Mon Mar 30 2020 02:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00183 * 2 1 4 4 H 1.48502 * 109.46644 * 272.65044 * 3 2 1 5 5 H 1.48504 * 109.47006 * 32.64511 * 3 2 1 6 6 H 1.48497 * 109.47530 * 152.65043 * 3 2 1 7 7 C 1.37881 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99941 * 9.34492 * 7 2 1 9 9 C 1.50704 * 119.99712 * 189.34290 * 7 2 1 10 10 H 1.08994 * 109.47222 * 303.95491 * 9 7 2 11 11 N 1.46904 * 109.47017 * 63.95759 * 9 7 2 12 12 C 1.46903 * 110.99586 * 198.81060 * 11 9 7 13 13 C 1.52995 * 117.49397 * 137.86181 * 12 11 9 14 14 C 1.52999 * 117.49695 * 206.48307 * 12 11 9 15 15 C 1.50697 * 109.46631 * 183.95577 * 9 7 2 16 16 C 1.38671 * 120.41625 * 106.58933 * 15 9 7 17 17 C 1.38633 * 118.42163 * 180.02562 * 16 15 9 18 18 C 1.38230 * 119.15870 * 359.97438 * 17 16 15 19 19 N 1.31858 * 120.76368 * 0.02562 * 18 17 16 20 20 C 1.31885 * 121.72569 * 359.69910 * 19 18 17 21 21 H 0.96997 * 119.99949 * 0.02562 * 1 2 3 22 22 H 1.00894 * 110.99801 * 74.86004 * 11 9 7 23 23 H 1.08999 * 115.56242 * 352.16873 * 12 11 9 24 24 H 1.09001 * 117.49641 * 214.97599 * 13 12 11 25 25 H 1.08993 * 117.50609 * 359.97438 * 13 12 11 26 26 H 1.09004 * 117.49733 * 359.97438 * 14 12 11 27 27 H 1.08997 * 117.50032 * 145.01793 * 14 12 11 28 28 H 1.08000 * 120.79509 * 359.97230 * 16 15 9 29 29 H 1.08000 * 120.42566 * 180.02562 * 17 16 15 30 30 H 1.08004 * 119.62046 * 179.97438 * 18 17 16 31 31 H 1.08001 * 119.61932 * 180.31298 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4406 2.0787 -1.3986 5 1 1.4757 2.6359 0.7553 6 1 3.5737 1.4247 0.6432 7 6 2.0045 -1.1941 0.0005 8 1 1.4753 -2.1232 -0.1509 9 6 3.4966 -1.2026 0.2124 10 1 3.9728 -0.5638 -0.5313 11 7 3.8029 -0.6998 1.5583 12 6 5.2052 -0.2728 1.6541 13 6 5.4976 1.0289 2.4030 14 6 5.8640 -0.3157 3.0344 15 6 4.0157 -2.6103 0.0719 16 6 4.7348 -2.9844 -1.0532 17 6 5.1924 -4.2901 -1.1399 18 6 4.9191 -5.1694 -0.1090 19 7 4.2320 -4.7787 0.9464 20 6 3.7858 -3.5433 1.0650 21 1 -0.4850 0.8400 -0.0004 22 1 3.5867 -1.3912 2.2605 23 1 5.8285 -0.5081 0.7915 24 1 6.3134 1.6501 2.0330 25 1 4.6496 1.5687 2.8242 26 1 5.2567 -0.6603 3.8714 27 1 6.9206 -0.5793 3.0798 28 1 4.9330 -2.2756 -1.8437 29 1 5.7561 -4.6161 -2.0016 30 1 5.2716 -6.1885 -0.1690 31 1 3.2308 -3.2585 1.9466 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261111857.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:54 Heat of formation + Delta-G solvation = 47.612789 kcal Electronic energy + Delta-G solvation = -14495.427081 eV Core-core repulsion = 12162.887095 eV Total energy + Delta-G solvation = -2332.539985 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.10743 -38.68924 -36.01303 -33.99989 -33.02902 -31.10663 -28.50780 -24.99531 -24.40000 -23.20753 -22.16465 -21.65624 -19.00287 -18.04073 -17.28746 -16.62958 -16.51627 -16.11809 -15.34281 -14.87411 -14.72382 -14.39110 -13.86908 -13.73404 -13.25947 -13.06959 -12.94647 -12.38799 -12.31283 -11.98917 -11.53105 -11.19524 -11.05993 -10.67908 -10.55678 -10.30187 -9.73859 -8.88829 -8.24332 -6.35290 0.31405 0.45768 1.47628 1.53644 1.80848 2.55368 2.94760 3.03017 3.08031 3.57920 3.66699 4.06510 4.07799 4.12554 4.22507 4.26966 4.29193 4.47035 4.68261 4.82239 4.84270 4.93129 5.02313 5.12803 5.27057 5.35902 5.50319 5.56675 5.88998 6.16915 6.45100 6.75424 6.80688 7.11131 7.40823 8.89072 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.023219 B = 0.012488 C = 0.009339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.633440 B = 2241.702184 C = 2997.559976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.295 1.295 5 H -0.307 1.307 6 H -0.190 1.190 7 C -0.513 4.513 8 H 0.024 0.976 9 C 0.240 3.760 10 H 0.048 0.952 11 N -0.654 5.654 12 C 0.003 3.997 13 C -0.175 4.175 14 C -0.181 4.181 15 C -0.135 4.135 16 C -0.091 4.091 17 C -0.162 4.162 18 C 0.069 3.931 19 N -0.508 5.508 20 C 0.085 3.915 21 H 0.263 0.737 22 H 0.332 0.668 23 H 0.093 0.907 24 H 0.105 0.895 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.107 0.893 28 H 0.143 0.857 29 H 0.168 0.832 30 H 0.183 0.817 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.156 -3.054 0.556 15.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.162 4.162 3 Si 0.765 3.235 4 H -0.222 1.222 5 H -0.235 1.235 6 H -0.110 1.110 7 C -0.551 4.551 8 H 0.042 0.958 9 C 0.131 3.869 10 H 0.066 0.934 11 N -0.284 5.284 12 C -0.107 4.107 13 C -0.213 4.213 14 C -0.219 4.219 15 C -0.139 4.139 16 C -0.118 4.118 17 C -0.181 4.181 18 C -0.088 4.088 19 N -0.217 5.217 20 C -0.071 4.071 21 H 0.072 0.928 22 H 0.153 0.847 23 H 0.111 0.889 24 H 0.124 0.876 25 H 0.100 0.900 26 H 0.110 0.890 27 H 0.126 0.874 28 H 0.161 0.839 29 H 0.186 0.814 30 H 0.200 0.800 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 14.599 -2.940 1.126 14.934 hybrid contribution -0.153 0.547 -0.697 0.899 sum 14.446 -2.393 0.429 14.649 Atomic orbital electron populations 1.70113 1.08852 1.28133 1.51311 1.25777 0.94923 1.03443 0.92061 0.85888 0.83460 0.77199 0.76993 1.22232 1.23484 1.11044 1.20901 0.91367 0.92843 1.49967 0.95792 1.18338 0.93706 0.86762 0.88084 0.93383 1.61043 1.17204 1.44256 1.05934 1.22467 0.90250 1.02479 0.95536 1.23137 1.02720 0.91137 1.04337 1.23235 1.01507 1.01323 0.95855 1.21885 0.96589 0.99693 0.95690 1.21817 0.95458 0.97598 0.96894 1.22443 1.01162 0.93405 1.01080 1.23254 0.94999 1.01274 0.89310 1.67625 1.10529 1.17440 1.26066 1.22366 0.97145 0.88671 0.98911 0.92803 0.84744 0.88915 0.87631 0.90004 0.88998 0.87442 0.83896 0.81402 0.80017 0.84365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.11 13.96 21.45 0.30 -58.82 16 2 C 0.04 2.15 5.45 84.66 0.46 2.61 16 3 Si 0.94 44.17 26.85 68.60 1.84 46.01 16 4 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 5 H -0.31 -14.96 7.11 99.48 0.71 -14.25 16 6 H -0.19 -7.92 4.34 99.48 0.43 -7.49 16 7 C -0.51 -28.33 9.18 25.60 0.24 -28.09 16 8 H 0.02 1.51 7.99 -2.91 -0.02 1.48 16 9 C 0.24 10.38 1.40 43.42 0.06 10.44 16 10 H 0.05 2.07 6.67 -2.39 -0.02 2.05 16 11 N -0.65 -25.77 4.62 -477.18 -2.21 -27.97 16 12 C 0.00 0.11 5.16 44.91 0.23 0.34 16 13 C -0.17 -5.01 9.63 30.59 0.29 -4.71 16 14 C -0.18 -4.77 10.32 30.59 0.32 -4.45 16 15 C -0.13 -5.20 4.60 -19.78 -0.09 -5.29 16 16 C -0.09 -2.93 9.81 22.47 0.22 -2.71 16 17 C -0.16 -4.21 10.11 22.36 0.23 -3.98 16 18 C 0.07 1.94 11.18 84.69 0.95 2.88 16 19 N -0.51 -18.07 10.36 -195.83 -2.03 -20.10 16 20 C 0.09 3.30 10.22 84.67 0.87 4.16 16 21 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 22 H 0.33 12.94 6.77 -89.70 -0.61 12.33 16 23 H 0.09 2.91 7.83 -2.39 -0.02 2.89 16 24 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 25 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 27 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.14 4.06 8.04 -2.91 -0.02 4.03 16 29 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 30 H 0.18 3.64 8.06 -2.91 -0.02 3.61 16 31 H 0.14 5.48 6.86 -2.91 -0.02 5.46 16 Total: -1.00 -66.97 262.55 1.92 -65.05 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.24 Total: 24.62 kcal Atomic # 6 Polarization: -32.57 SS G_CDS: 3.77 Total: -28.80 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -3.94 Total: -106.89 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.84 Total: 46.01 kcal Total: -66.97 1.92 -65.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111857.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.663 kcal (2) G-P(sol) polarization free energy of solvation -66.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds