Wall clock time and date at job start Mon Mar 30 2020 02:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99887 * 2 1 4 4 H 1.48503 * 109.46885 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46870 * 119.99897 * 3 2 1 6 6 H 1.48498 * 109.46987 * 240.00255 * 3 2 1 7 7 C 1.37880 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99832 * 175.11423 * 7 2 1 9 9 C 1.50706 * 119.99833 * 355.11578 * 7 2 1 10 10 N 1.46897 * 115.54836 * 279.59844 * 9 7 2 11 11 C 1.46894 * 111.00217 * 294.72574 * 10 9 7 12 12 C 1.50707 * 109.47087 * 176.21789 * 11 10 9 13 13 C 1.38663 * 120.41797 * 89.99989 * 12 11 10 14 14 C 1.38626 * 118.42190 * 180.02562 * 13 12 11 15 15 C 1.38227 * 119.16186 * 0.02562 * 14 13 12 16 16 N 1.31855 * 120.76117 * 359.97438 * 15 14 13 17 17 C 1.31883 * 121.72684 * 359.70853 * 16 15 14 18 18 C 1.52998 * 117.49784 * 133.89453 * 9 7 2 19 19 C 1.53001 * 117.49836 * 65.26757 * 9 7 2 20 20 H 0.96998 * 119.99987 * 359.97438 * 1 2 3 21 21 H 1.00907 * 111.00065 * 58.68227 * 10 9 7 22 22 H 1.09000 * 109.47265 * 296.21691 * 11 10 9 23 23 H 1.08999 * 109.47102 * 56.22316 * 11 10 9 24 24 H 1.08004 * 120.79303 * 359.97438 * 13 12 11 25 25 H 1.08002 * 120.42290 * 180.02562 * 14 13 12 26 26 H 1.08004 * 119.62303 * 179.97438 * 15 14 13 27 27 H 1.08001 * 119.62129 * 180.31517 * 17 16 15 28 28 H 1.08997 * 117.49747 * 359.97438 * 18 9 7 29 29 H 1.08996 * 117.50098 * 145.02206 * 18 9 7 30 30 H 1.08996 * 117.49882 * 214.97183 * 19 9 7 31 31 H 1.09000 * 117.49548 * 359.97438 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6964 1.2126 6 1 3.1028 1.6964 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0816 -1.1957 -0.0802 9 6 1.2552 -2.4969 0.1100 10 7 0.8455 -2.8788 1.4680 11 6 2.0153 -3.1438 2.3159 12 6 1.5600 -3.4410 3.7215 13 6 1.2789 -4.7427 4.1079 14 6 0.8626 -4.9689 5.4107 15 6 0.7419 -3.8969 6.2750 16 7 1.0179 -2.6719 5.8727 17 6 1.4223 -2.4204 4.6428 18 6 1.6452 -3.6201 -0.8529 19 6 0.3222 -2.8751 -1.0421 20 1 -0.4850 0.8400 0.0004 21 1 0.2534 -2.1727 1.8791 22 1 2.5627 -4.0004 1.9226 23 1 2.6653 -2.2689 2.3220 24 1 1.3810 -5.5609 3.4103 25 1 0.6354 -5.9700 5.7463 26 1 0.4178 -4.0645 7.2915 27 1 1.6440 -1.4045 4.3511 28 1 2.4435 -3.4166 -1.5666 29 1 1.5979 -4.6428 -0.4788 30 1 -0.5954 -3.4078 -0.7925 31 1 0.2501 -2.1814 -1.8797 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261128146.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:01 Heat of formation + Delta-G solvation = 37.944850 kcal Electronic energy + Delta-G solvation = -14170.122788 eV Core-core repulsion = 11837.163569 eV Total energy + Delta-G solvation = -2332.959218 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.01991 -38.64626 -35.13342 -34.03257 -32.95666 -31.30305 -27.59365 -26.23308 -24.41255 -23.08382 -22.36107 -21.15059 -18.40193 -17.93719 -17.23091 -16.82347 -16.28418 -15.82663 -15.43868 -14.88884 -14.62288 -14.12527 -13.88225 -13.77847 -13.44398 -12.95373 -12.84035 -12.58648 -12.31244 -11.98627 -11.88763 -11.16883 -10.69633 -10.54699 -10.34358 -10.03248 -9.83805 -9.07226 -8.11233 -6.32178 0.22485 0.41857 1.38553 1.40338 1.46887 2.37683 2.88985 3.11617 3.51317 3.57602 3.72514 4.00394 4.05228 4.19488 4.22083 4.62958 4.64212 4.68183 4.78335 4.92417 5.00586 5.02551 5.20947 5.24993 5.36989 5.50224 5.65291 5.67356 5.85627 6.08176 6.59396 6.71464 6.92531 7.06992 7.40479 8.89439 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.029272 B = 0.008721 C = 0.007278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.306137 B = 3209.815954 C = 3846.212886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.036 3.964 3 Si 0.945 3.055 4 H -0.284 1.284 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.049 0.951 9 C 0.171 3.829 10 N -0.650 5.650 11 C 0.116 3.884 12 C -0.131 4.131 13 C -0.065 4.065 14 C -0.163 4.163 15 C 0.079 3.921 16 N -0.512 5.512 17 C 0.083 3.917 18 C -0.176 4.176 19 C -0.149 4.149 20 H 0.262 0.738 21 H 0.328 0.672 22 H 0.076 0.924 23 H 0.025 0.975 24 H 0.149 0.851 25 H 0.171 0.829 26 H 0.184 0.816 27 H 0.139 0.861 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.065 -8.810 8.316 12.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.167 4.167 3 Si 0.771 3.229 4 H -0.210 1.210 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.577 4.577 8 H 0.067 0.933 9 C 0.081 3.919 10 N -0.279 5.279 11 C -0.013 4.013 12 C -0.133 4.133 13 C -0.091 4.091 14 C -0.183 4.183 15 C -0.078 4.078 16 N -0.221 5.221 17 C -0.073 4.073 18 C -0.214 4.214 19 C -0.187 4.187 20 H 0.071 0.929 21 H 0.145 0.855 22 H 0.095 0.905 23 H 0.043 0.957 24 H 0.167 0.833 25 H 0.189 0.811 26 H 0.201 0.799 27 H 0.156 0.844 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.089 0.911 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.718 -8.668 8.730 12.422 hybrid contribution 0.686 1.521 -0.785 1.844 sum 2.404 -7.147 7.945 10.954 Atomic orbital electron populations 1.70093 1.06850 1.27367 1.49116 1.25633 0.95504 1.01703 0.93830 0.85826 0.78623 0.79716 0.78755 1.20980 1.19829 1.19838 1.21070 0.92804 0.91192 1.52604 0.93322 1.18899 0.98068 0.90922 0.83997 1.60784 1.16944 1.47912 1.02231 1.20500 0.92898 0.99900 0.88021 1.20972 1.00689 0.95193 0.96452 1.21767 0.94358 0.96177 0.96841 1.22496 1.00071 1.02106 0.93585 1.23328 0.95645 0.87385 1.01437 1.67659 1.11978 1.25174 1.17317 1.22618 0.96200 0.99379 0.89138 1.22970 0.98114 0.96516 1.03764 1.22400 0.92806 1.01950 1.01566 0.92890 0.85509 0.90539 0.95672 0.83282 0.81146 0.79934 0.84391 0.90403 0.89111 0.91071 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.97 12.87 21.45 0.28 -49.69 16 2 C 0.04 1.92 5.44 84.65 0.46 2.38 16 3 Si 0.94 42.70 29.54 68.60 2.03 44.73 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.54 -28.61 8.17 25.60 0.21 -28.40 16 8 H 0.05 2.61 7.82 -2.91 -0.02 2.59 16 9 C 0.17 8.27 1.52 2.78 0.00 8.27 16 10 N -0.65 -28.79 6.62 -477.87 -3.16 -31.95 16 11 C 0.12 4.46 5.75 85.56 0.49 4.95 16 12 C -0.13 -4.36 5.37 -19.77 -0.11 -4.46 16 13 C -0.06 -1.74 9.86 22.46 0.22 -1.52 16 14 C -0.16 -3.55 10.11 22.36 0.23 -3.32 16 15 C 0.08 1.95 11.18 84.69 0.95 2.89 16 16 N -0.51 -16.58 10.36 -195.84 -2.03 -18.61 16 17 C 0.08 2.89 10.86 84.67 0.92 3.81 16 18 C -0.18 -7.47 10.16 30.60 0.31 -7.16 16 19 C -0.15 -7.06 9.65 30.60 0.30 -6.76 16 20 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 21 H 0.33 16.06 8.76 -89.69 -0.79 15.27 16 22 H 0.08 2.73 8.10 -2.39 -0.02 2.71 16 23 H 0.03 1.07 7.42 -2.39 -0.02 1.05 16 24 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 25 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 26 H 0.18 3.08 8.06 -2.91 -0.02 3.05 16 27 H 0.14 5.01 8.06 -2.91 -0.02 4.99 16 28 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 29 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 30 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 31 H 0.06 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -59.61 273.98 1.42 -58.18 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.33 Total: 26.66 kcal Atomic # 6 Polarization: -33.30 SS G_CDS: 3.98 Total: -29.32 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -4.92 Total: -100.25 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -59.61 1.42 -58.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261128146.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.127 kcal (2) G-P(sol) polarization free energy of solvation -59.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds