Wall clock time and date at job start Mon Mar 30 2020 02:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99803 * 2 1 4 4 H 1.48503 * 109.47072 * 240.00128 * 3 2 1 5 5 H 1.48505 * 109.47370 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47320 * 120.00090 * 3 2 1 7 7 C 1.37870 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00172 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.46945 * 180.02562 * 9 7 2 11 11 N 1.46905 * 109.46876 * 60.00408 * 9 7 2 12 12 C 1.46901 * 110.99870 * 85.00155 * 11 9 7 13 13 C 1.53003 * 117.49740 * 223.62163 * 12 11 9 14 14 C 1.52996 * 117.50109 * 154.99996 * 12 11 9 15 15 C 1.50702 * 109.47188 * 300.00416 * 9 7 2 16 16 C 1.38219 * 119.61800 * 274.99596 * 15 9 7 17 17 C 1.38630 * 119.16064 * 179.97438 * 16 15 9 18 18 C 1.38673 * 118.41919 * 0.02562 * 17 16 15 19 19 C 1.38179 * 119.16520 * 359.97438 * 18 17 16 20 20 N 1.31852 * 119.61559 * 94.72566 * 15 9 7 21 21 H 0.97003 * 120.00063 * 0.02562 * 1 2 3 22 22 H 1.00901 * 110.99869 * 321.04866 * 11 9 7 23 23 H 1.09007 * 115.55097 * 9.32618 * 12 11 9 24 24 H 1.08999 * 117.49741 * 0.02562 * 13 12 11 25 25 H 1.08998 * 117.49619 * 145.01632 * 13 12 11 26 26 H 1.08996 * 117.50348 * 214.97955 * 14 12 11 27 27 H 1.09011 * 117.49430 * 359.97438 * 14 12 11 28 28 H 1.08001 * 120.42146 * 0.02562 * 16 15 9 29 29 H 1.08005 * 120.79196 * 180.02562 * 17 16 15 30 30 H 1.07997 * 120.41565 * 180.02562 * 18 17 16 31 31 H 1.07999 * 119.61852 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 1.9594 -3.3276 -0.0005 11 7 0.4061 -2.5767 -1.1998 12 6 1.1669 -3.0884 -2.3475 13 6 0.9759 -2.3840 -3.6923 14 6 0.3812 -3.7754 -3.4663 15 6 0.3850 -2.5792 1.2302 16 6 0.9247 -3.0398 2.4164 17 6 0.1196 -3.1091 3.5429 18 6 -1.2043 -2.7112 3.4334 19 6 -1.6736 -2.2616 2.2140 20 7 -0.8773 -2.2041 1.1643 21 1 -0.4850 0.8401 -0.0004 22 1 -0.0064 -1.6802 -1.4100 23 1 2.1596 -3.4759 -2.1185 24 1 0.2862 -1.5406 -3.7252 25 1 1.8432 -2.3078 -4.3481 26 1 0.8570 -4.6146 -3.9735 27 1 -0.7003 -3.8480 -3.3504 28 1 1.9607 -3.3411 2.4653 29 1 0.5141 -3.4645 4.4834 30 1 -1.8600 -2.7514 4.2906 31 1 -2.7033 -1.9495 2.1206 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261134037.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:48 Heat of formation + Delta-G solvation = 69.310194 kcal Electronic energy + Delta-G solvation = -14614.366727 eV Core-core repulsion = 12282.767613 eV Total energy + Delta-G solvation = -2331.599115 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.98904 -36.81836 -34.08353 -31.32455 -31.11600 -29.48639 -26.12742 -23.26695 -22.34449 -21.59557 -20.40174 -20.02086 -16.60912 -15.82449 -15.35858 -14.92336 -14.60920 -14.24445 -13.76255 -13.05840 -12.40399 -12.29378 -12.01098 -11.69256 -11.48626 -10.99267 -10.82718 -10.82227 -10.69790 -10.39803 -9.73743 -9.56529 -9.48393 -8.81479 -8.61003 -7.94123 -7.78153 -6.81817 -5.95549 -4.24488 2.27073 2.43335 3.25064 3.30616 3.32927 4.33914 4.73166 5.03960 5.19952 5.33462 5.57976 5.65096 5.75669 5.85406 5.88678 6.07595 6.19721 6.30361 6.37696 6.53962 6.67638 6.77333 6.80918 6.86386 6.89989 7.12006 7.32026 7.71942 7.89797 8.03840 8.45891 8.83434 9.16029 9.44541 9.52740 10.90585 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.019407 B = 0.014164 C = 0.009593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.449207 B = 1976.336342 C = 2917.984030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.074 3.926 3 Si 0.885 3.115 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.559 4.559 8 H 0.059 0.941 9 C 0.251 3.749 10 H 0.044 0.956 11 N -0.644 5.644 12 C 0.056 3.944 13 C -0.214 4.214 14 C -0.193 4.193 15 C 0.201 3.799 16 C -0.189 4.189 17 C -0.093 4.093 18 C -0.217 4.217 19 C 0.086 3.914 20 N -0.405 5.405 21 H 0.264 0.736 22 H 0.371 0.629 23 H 0.093 0.907 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.228 -4.346 1.176 4.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.133 4.133 3 Si 0.713 3.287 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.598 4.598 8 H 0.077 0.923 9 C 0.141 3.859 10 H 0.062 0.938 11 N -0.278 5.278 12 C -0.056 4.056 13 C -0.253 4.253 14 C -0.232 4.232 15 C 0.062 3.938 16 C -0.210 4.210 17 C -0.119 4.119 18 C -0.237 4.237 19 C -0.072 4.072 20 N -0.113 5.113 21 H 0.074 0.926 22 H 0.198 0.802 23 H 0.110 0.890 24 H 0.106 0.894 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.107 0.893 28 H 0.135 0.865 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.033 -4.500 0.564 4.651 hybrid contribution 1.358 1.650 0.827 2.291 sum 0.326 -2.850 1.391 3.188 Atomic orbital electron populations 1.69949 1.04953 1.26572 1.46124 1.25103 0.95005 0.99030 0.94195 0.86771 0.79847 0.83446 0.78671 1.20140 1.21196 1.20333 1.21499 0.93234 0.90687 1.54401 0.92304 1.18102 0.88039 0.95062 0.84649 0.93792 1.60466 1.30801 1.35392 1.01139 1.22265 0.96025 1.00629 0.86701 1.23252 1.02953 0.95756 1.03322 1.23087 1.00277 0.94696 1.05116 1.21761 0.90147 0.86826 0.95020 1.21796 1.00315 1.04497 0.94356 1.21211 0.94075 0.98804 0.97796 1.21812 0.96591 1.06096 0.99188 1.22738 0.99342 0.96020 0.89120 1.67802 1.04592 1.09316 1.29594 0.92581 0.80235 0.88953 0.89394 0.90223 0.90203 0.89321 0.86453 0.86869 0.87072 0.84901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.70 9.41 55.43 0.52 -22.17 16 2 C 0.07 1.95 5.03 -17.82 -0.09 1.86 16 3 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.56 -14.64 8.74 -34.44 -0.30 -14.94 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.25 6.15 2.44 -70.01 -0.17 5.98 16 10 H 0.04 1.03 7.54 -51.93 -0.39 0.63 16 11 N -0.64 -15.37 6.07 -102.17 -0.62 -15.99 16 12 C 0.06 1.16 6.14 -67.71 -0.42 0.75 16 13 C -0.21 -3.99 10.23 -26.73 -0.27 -4.27 16 14 C -0.19 -3.43 10.46 -26.73 -0.28 -3.71 16 15 C 0.20 4.85 5.26 -82.59 -0.43 4.41 16 16 C -0.19 -4.01 9.77 -39.44 -0.39 -4.39 16 17 C -0.09 -1.73 10.18 -39.28 -0.40 -2.13 16 18 C -0.22 -4.00 10.11 -39.44 -0.40 -4.40 16 19 C 0.09 1.81 11.18 -17.55 -0.20 1.61 16 20 N -0.41 -9.87 7.98 -9.48 -0.08 -9.95 16 21 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 22 H 0.37 9.68 6.18 -39.29 -0.24 9.44 16 23 H 0.09 1.85 7.60 -51.92 -0.39 1.46 16 24 H 0.09 1.73 8.09 -51.93 -0.42 1.31 16 25 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 28 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 29 H 0.11 1.72 8.06 -52.48 -0.42 1.29 16 30 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.13 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 266.05 15.07 4.01 4.01 Total: -1.00 -27.72 266.05 -8.48 -36.20 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -3.95 Total: 11.42 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -3.35 Total: -19.23 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: -0.17 Total: -48.12 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -27.72 -8.48 -36.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261134037.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.513 kcal (2) G-P(sol) polarization free energy of solvation -27.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds