Wall clock time and date at job start Mon Mar 30 2020 02:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00513 * 2 1 4 4 H 1.48502 * 109.47625 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47238 * 300.00615 * 3 2 1 6 6 H 1.48508 * 109.47147 * 60.00234 * 3 2 1 7 7 C 1.37885 * 119.99634 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99747 * 189.58975 * 7 2 1 9 9 C 1.50699 * 120.00069 * 9.58143 * 7 2 1 10 10 H 1.08999 * 109.46834 * 176.55025 * 9 7 2 11 11 N 1.46899 * 109.47415 * 296.55560 * 9 7 2 12 12 C 1.46892 * 110.99841 * 274.99879 * 11 9 7 13 13 C 1.53004 * 117.49803 * 223.74752 * 12 11 9 14 14 C 1.52997 * 117.50075 * 155.08662 * 12 11 9 15 15 C 1.50709 * 109.46849 * 56.55640 * 9 7 2 16 16 C 1.38643 * 120.78657 * 269.15310 * 15 9 7 17 17 C 1.38204 * 119.15936 * 179.74471 * 16 15 9 18 18 N 1.31866 * 120.76657 * 0.25572 * 17 16 15 19 19 C 1.31870 * 121.72312 * 359.97438 * 18 17 16 20 20 C 1.38201 * 120.76730 * 359.97438 * 19 18 17 21 21 H 0.97004 * 119.99598 * 359.97438 * 1 2 3 22 22 H 1.00894 * 110.99767 * 38.95513 * 11 9 7 23 23 H 1.09005 * 115.55307 * 9.41618 * 12 11 9 24 24 H 1.08995 * 117.50019 * 0.02562 * 13 12 11 25 25 H 1.09003 * 117.49678 * 145.02104 * 13 12 11 26 26 H 1.08997 * 117.50611 * 214.98153 * 14 12 11 27 27 H 1.08998 * 117.49658 * 0.02562 * 14 12 11 28 28 H 1.08001 * 120.42468 * 0.02562 * 16 15 9 29 29 H 1.08002 * 119.61796 * 180.27142 * 17 16 15 30 30 H 1.08001 * 119.61717 * 180.02562 * 19 18 17 31 31 H 1.07995 * 120.41827 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0732 -1.2008 0.1553 9 6 1.2667 -2.4900 -0.2183 10 1 1.9799 -3.3138 -0.2467 11 7 0.3159 -2.7030 0.8810 12 6 0.9728 -3.3429 2.0285 13 6 0.2268 -4.4836 2.7237 14 6 0.3544 -3.1215 3.4103 15 6 0.5183 -2.4284 -1.5250 16 6 -0.7894 -1.9702 -1.5729 17 6 -1.4421 -1.9229 -2.7901 18 7 -0.8373 -2.3116 -3.8955 19 6 0.4038 -2.7572 -3.8869 20 6 1.1199 -2.8320 -2.7072 21 1 -0.4850 0.8401 0.0004 22 1 -0.1228 -1.8360 1.1527 23 1 2.0588 -3.4145 1.9688 24 1 -0.7512 -4.7595 2.3293 25 1 0.8221 -5.3054 3.1217 26 1 1.0334 -3.0477 4.2597 27 1 -0.5401 -2.5013 3.4678 28 1 -1.2901 -1.6500 -0.6711 29 1 -2.4594 -1.5630 -2.8366 30 1 0.8664 -3.0664 -4.8125 31 1 2.1362 -3.1974 -2.7067 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261137984.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:36 Heat of formation + Delta-G solvation = 61.595325 kcal Electronic energy + Delta-G solvation = -14596.608254 eV Core-core repulsion = 12264.674597 eV Total energy + Delta-G solvation = -2331.933657 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.03936 -36.99351 -34.55332 -31.61705 -30.21690 -29.87962 -26.40970 -23.33652 -22.30362 -21.75376 -20.47657 -20.06751 -16.73393 -15.79538 -15.56974 -14.76591 -14.69304 -14.26552 -13.87464 -13.18333 -12.63401 -12.61365 -11.97336 -11.87240 -11.58495 -11.13050 -10.95393 -10.87651 -10.52906 -10.41834 -9.83838 -9.72034 -9.53953 -8.88760 -8.45442 -8.22329 -7.94292 -7.10919 -6.21310 -4.43088 2.27558 2.56831 3.14405 3.24506 3.27119 4.21432 4.58221 4.90302 5.01645 5.20030 5.39593 5.63319 5.70731 5.84439 6.06260 6.17484 6.21532 6.31898 6.44223 6.55515 6.63267 6.67971 6.73715 6.75552 7.05890 7.35628 7.59434 7.77276 7.84890 7.94706 8.30917 8.69113 8.91578 8.99348 9.29622 10.67346 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.014457 C = 0.009477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.614956 B = 1936.368282 C = 2953.793239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.075 3.925 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.238 3.762 10 H 0.042 0.958 11 N -0.660 5.660 12 C 0.051 3.949 13 C -0.189 4.189 14 C -0.202 4.202 15 C 0.018 3.982 16 C -0.099 4.099 17 C 0.057 3.943 18 N -0.512 5.512 19 C 0.064 3.936 20 C -0.184 4.184 21 H 0.268 0.732 22 H 0.368 0.632 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.151 0.849 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.092 -3.789 1.558 4.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.129 4.129 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.584 4.584 8 H 0.080 0.920 9 C 0.130 3.870 10 H 0.060 0.940 11 N -0.296 5.296 12 C -0.061 4.061 13 C -0.228 4.228 14 C -0.241 4.241 15 C 0.009 3.991 16 C -0.119 4.119 17 C -0.099 4.099 18 N -0.223 5.223 19 C -0.093 4.093 20 C -0.205 4.205 21 H 0.079 0.921 22 H 0.194 0.806 23 H 0.106 0.894 24 H 0.108 0.892 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.168 0.832 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.776 -4.171 0.511 4.273 hybrid contribution 1.513 1.826 1.091 2.611 sum 0.738 -2.345 1.602 2.934 Atomic orbital electron populations 1.69638 1.05839 1.27240 1.48463 1.24995 0.94927 0.99420 0.93606 0.86509 0.80324 0.83297 0.77807 1.19697 1.20705 1.20831 1.21670 0.94992 0.91434 1.50255 0.92044 1.18161 0.88650 0.94818 0.85375 0.93960 1.60588 1.30804 1.32206 1.05954 1.22154 0.95469 0.99465 0.89001 1.23119 1.02818 0.91593 1.05270 1.23114 1.03463 1.00415 0.97081 1.20499 0.93047 0.89820 0.95700 1.22189 0.95198 0.95401 0.99126 1.22547 0.99414 0.98904 0.89011 1.67422 1.10888 1.12409 1.31548 1.22244 0.91074 0.99000 0.96944 1.21801 1.00632 1.04184 0.93840 0.92110 0.80581 0.89413 0.89152 0.90146 0.89973 0.89248 0.83168 0.84781 0.84778 0.86640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.68 8.06 55.43 0.45 -21.23 16 2 C 0.07 1.87 5.04 -17.82 -0.09 1.78 16 3 Si 0.89 20.12 29.55 -169.99 -5.02 15.10 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.54 -13.68 8.73 -34.44 -0.30 -13.98 16 8 H 0.06 1.56 7.83 -52.48 -0.41 1.15 16 9 C 0.24 5.55 2.42 -70.01 -0.17 5.38 16 10 H 0.04 0.96 7.70 -51.93 -0.40 0.56 16 11 N -0.66 -14.55 5.67 -102.18 -0.58 -15.12 16 12 C 0.05 0.99 6.01 -67.72 -0.41 0.59 16 13 C -0.19 -3.13 10.46 -26.69 -0.28 -3.41 16 14 C -0.20 -3.44 10.34 -26.69 -0.28 -3.72 16 15 C 0.02 0.42 4.69 -104.32 -0.49 -0.07 16 16 C -0.10 -2.24 7.59 -39.44 -0.30 -2.54 16 17 C 0.06 1.21 11.18 -17.55 -0.20 1.01 16 18 N -0.51 -11.01 10.36 -13.25 -0.14 -11.15 16 19 C 0.06 1.30 11.18 -17.55 -0.20 1.10 16 20 C -0.18 -3.88 9.82 -39.44 -0.39 -4.27 16 21 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 22 H 0.37 8.70 5.84 -39.29 -0.23 8.47 16 23 H 0.09 1.73 7.77 -51.93 -0.40 1.33 16 24 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 25 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 26 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 28 H 0.15 3.52 5.81 -52.49 -0.30 3.22 16 29 H 0.13 2.49 8.06 -52.49 -0.42 2.07 16 30 H 0.13 2.24 8.06 -52.49 -0.42 1.81 16 31 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 262.42 15.07 3.95 3.95 Total: -1.00 -25.75 262.42 -8.27 -34.02 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -3.84 Total: 12.55 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -3.09 Total: -18.12 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -0.27 Total: -47.51 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -25.75 -8.27 -34.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137984.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.617 kcal (2) G-P(sol) polarization free energy of solvation -25.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds