Wall clock time and date at job start Mon Mar 30 2020 02:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00513 * 2 1 4 4 H 1.48502 * 109.47625 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47238 * 300.00615 * 3 2 1 6 6 H 1.48508 * 109.47147 * 60.00234 * 3 2 1 7 7 C 1.37885 * 119.99634 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99747 * 189.58975 * 7 2 1 9 9 C 1.50699 * 120.00069 * 9.58143 * 7 2 1 10 10 H 1.08999 * 109.46834 * 176.55025 * 9 7 2 11 11 N 1.46899 * 109.47415 * 296.55560 * 9 7 2 12 12 C 1.46892 * 110.99841 * 274.99879 * 11 9 7 13 13 C 1.53004 * 117.49803 * 223.74752 * 12 11 9 14 14 C 1.52997 * 117.50075 * 155.08662 * 12 11 9 15 15 C 1.50709 * 109.46849 * 56.55640 * 9 7 2 16 16 C 1.38643 * 120.78657 * 269.15310 * 15 9 7 17 17 C 1.38204 * 119.15936 * 179.74471 * 16 15 9 18 18 N 1.31866 * 120.76657 * 0.25572 * 17 16 15 19 19 C 1.31870 * 121.72312 * 359.97438 * 18 17 16 20 20 C 1.38201 * 120.76730 * 359.97438 * 19 18 17 21 21 H 0.97004 * 119.99598 * 359.97438 * 1 2 3 22 22 H 1.00894 * 110.99767 * 38.95513 * 11 9 7 23 23 H 1.09005 * 115.55307 * 9.41618 * 12 11 9 24 24 H 1.08995 * 117.50019 * 0.02562 * 13 12 11 25 25 H 1.09003 * 117.49678 * 145.02104 * 13 12 11 26 26 H 1.08997 * 117.50611 * 214.98153 * 14 12 11 27 27 H 1.08998 * 117.49658 * 0.02562 * 14 12 11 28 28 H 1.08001 * 120.42468 * 0.02562 * 16 15 9 29 29 H 1.08002 * 119.61796 * 180.27142 * 17 16 15 30 30 H 1.08001 * 119.61717 * 180.02562 * 19 18 17 31 31 H 1.07995 * 120.41827 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0732 -1.2008 0.1553 9 6 1.2667 -2.4900 -0.2183 10 1 1.9799 -3.3138 -0.2467 11 7 0.3159 -2.7030 0.8810 12 6 0.9728 -3.3429 2.0285 13 6 0.2268 -4.4836 2.7237 14 6 0.3544 -3.1215 3.4103 15 6 0.5183 -2.4284 -1.5250 16 6 -0.7894 -1.9702 -1.5729 17 6 -1.4421 -1.9229 -2.7901 18 7 -0.8373 -2.3116 -3.8955 19 6 0.4038 -2.7572 -3.8869 20 6 1.1199 -2.8320 -2.7072 21 1 -0.4850 0.8401 0.0004 22 1 -0.1228 -1.8360 1.1527 23 1 2.0588 -3.4145 1.9688 24 1 -0.7512 -4.7595 2.3293 25 1 0.8221 -5.3054 3.1217 26 1 1.0334 -3.0477 4.2597 27 1 -0.5401 -2.5013 3.4678 28 1 -1.2901 -1.6500 -0.6711 29 1 -2.4594 -1.5630 -2.8366 30 1 0.8664 -3.0664 -4.8125 31 1 2.1362 -3.1974 -2.7067 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261137984.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:36 Heat of formation + Delta-G solvation = 47.277222 kcal Electronic energy + Delta-G solvation = -14597.229134 eV Core-core repulsion = 12264.674597 eV Total energy + Delta-G solvation = -2332.554536 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.70163 -38.53363 -36.22605 -33.44265 -31.86049 -31.54182 -28.22229 -25.10658 -23.95090 -23.10591 -22.16265 -21.62637 -18.58467 -17.45102 -17.20325 -16.54699 -16.27053 -15.89186 -15.47820 -14.86889 -14.31292 -14.21051 -13.66795 -13.52935 -13.30556 -12.93656 -12.64608 -12.29309 -12.23781 -12.13101 -11.61932 -11.26239 -11.07483 -10.71998 -10.12548 -9.92074 -9.63609 -8.80981 -8.06419 -6.36029 0.61513 0.87291 1.34091 1.40520 1.47210 2.35391 3.01557 3.18228 3.32323 3.64242 3.85883 4.20860 4.31022 4.32986 4.44526 4.60274 4.76591 4.84029 4.86929 4.92074 5.02235 5.09635 5.17697 5.38048 5.41244 5.59599 5.71307 6.00377 6.08444 6.24235 6.50167 6.88595 7.10459 7.33799 7.38816 8.76841 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.014457 C = 0.009477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.614956 B = 1936.368282 C = 2953.793239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.043 3.957 3 Si 0.941 3.059 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.562 4.562 8 H 0.049 0.951 9 C 0.240 3.760 10 H 0.037 0.963 11 N -0.661 5.661 12 C 0.015 3.985 13 C -0.166 4.166 14 C -0.192 4.192 15 C -0.003 4.003 16 C -0.111 4.111 17 C 0.053 3.947 18 N -0.522 5.522 19 C 0.067 3.933 20 C -0.193 4.193 21 H 0.268 0.732 22 H 0.356 0.644 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.106 0.894 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.138 0.862 29 H 0.157 0.843 30 H 0.172 0.828 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.159 -4.153 1.444 4.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.160 4.160 3 Si 0.768 3.232 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.601 4.601 8 H 0.067 0.933 9 C 0.131 3.869 10 H 0.055 0.945 11 N -0.295 5.295 12 C -0.096 4.096 13 C -0.205 4.205 14 C -0.230 4.230 15 C -0.012 4.012 16 C -0.131 4.131 17 C -0.102 4.102 18 N -0.232 5.232 19 C -0.089 4.089 20 C -0.213 4.213 21 H 0.078 0.922 22 H 0.180 0.820 23 H 0.098 0.902 24 H 0.105 0.895 25 H 0.125 0.875 26 H 0.121 0.879 27 H 0.101 0.899 28 H 0.156 0.844 29 H 0.175 0.825 30 H 0.189 0.811 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.710 -4.555 0.408 4.628 hybrid contribution 1.502 1.895 1.125 2.667 sum 0.792 -2.659 1.533 3.170 Atomic orbital electron populations 1.69737 1.06178 1.27456 1.48212 1.25462 0.95629 1.01253 0.93664 0.85768 0.79230 0.80725 0.77443 1.19949 1.21316 1.20388 1.21779 0.94532 0.92687 1.51066 0.93297 1.18090 0.88788 0.93783 0.86251 0.94481 1.60620 1.30733 1.31445 1.06695 1.22272 0.95389 1.02228 0.89736 1.23144 1.02322 0.91733 1.03265 1.23162 1.03125 1.00580 0.96157 1.20670 0.93542 0.90759 0.96235 1.22110 0.95372 0.96365 0.99281 1.22883 1.00409 0.98410 0.88523 1.67527 1.11558 1.12754 1.31385 1.22829 0.90552 0.97513 0.98047 1.22071 1.01585 1.04069 0.93607 0.92192 0.81985 0.90211 0.89463 0.87545 0.87938 0.89855 0.84441 0.82531 0.81086 0.84928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -43.71 8.06 21.45 0.17 -43.54 16 2 C 0.04 2.17 5.04 84.66 0.43 2.59 16 3 Si 0.94 41.23 29.55 68.60 2.03 43.26 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.56 -28.50 8.73 25.60 0.22 -28.27 16 8 H 0.05 2.53 7.83 -2.91 -0.02 2.51 16 9 C 0.24 11.27 2.42 43.43 0.11 11.38 16 10 H 0.04 1.72 7.70 -2.39 -0.02 1.70 16 11 N -0.66 -29.39 5.67 -477.18 -2.70 -32.09 16 12 C 0.02 0.59 6.01 44.92 0.27 0.86 16 13 C -0.17 -5.19 10.46 30.62 0.32 -4.87 16 14 C -0.19 -6.25 10.34 30.62 0.32 -5.94 16 15 C 0.00 -0.14 4.69 -19.67 -0.09 -0.23 16 16 C -0.11 -5.00 7.59 22.36 0.17 -4.83 16 17 C 0.05 2.20 11.18 84.68 0.95 3.15 16 18 N -0.52 -21.45 10.36 -195.85 -2.03 -23.48 16 19 C 0.07 2.57 11.18 84.68 0.95 3.51 16 20 C -0.19 -7.91 9.82 22.36 0.22 -7.69 16 21 H 0.27 12.90 8.31 -92.71 -0.77 12.13 16 22 H 0.36 17.07 5.84 -89.70 -0.52 16.55 16 23 H 0.08 3.16 7.77 -2.38 -0.02 3.14 16 24 H 0.09 2.79 8.14 -2.39 -0.02 2.78 16 25 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 26 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 27 H 0.08 2.81 8.14 -2.39 -0.02 2.80 16 28 H 0.14 6.53 5.81 -2.91 -0.02 6.51 16 29 H 0.16 5.60 8.06 -2.91 -0.02 5.58 16 30 H 0.17 5.12 8.06 -2.91 -0.02 5.09 16 31 H 0.13 4.85 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -53.47 262.42 1.92 -51.55 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: 0.60 Total: 34.65 kcal Atomic # 6 Polarization: -34.20 SS G_CDS: 3.85 Total: -30.35 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -4.56 Total: -99.11 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -53.47 1.92 -51.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137984.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.824 kcal (2) G-P(sol) polarization free energy of solvation -53.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds