Wall clock time and date at job start Mon Mar 30 2020 02:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00094 * 2 1 4 4 H 1.48506 * 109.47273 * 264.37761 * 3 2 1 5 5 H 1.48504 * 109.47125 * 24.37577 * 3 2 1 6 6 H 1.48497 * 109.47239 * 144.37780 * 3 2 1 7 7 C 1.37875 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99884 * 0.90500 * 7 2 1 9 9 C 1.50695 * 120.00509 * 180.91290 * 7 2 1 10 10 N 1.46905 * 115.55861 * 299.26642 * 9 7 2 11 11 C 1.46903 * 110.99760 * 319.78892 * 10 9 7 12 12 C 1.50695 * 109.47248 * 187.18571 * 11 10 9 13 13 C 1.38226 * 119.62067 * 94.72714 * 12 11 10 14 14 C 1.38636 * 119.16103 * 179.75582 * 13 12 11 15 15 C 1.38675 * 118.42007 * 0.50719 * 14 13 12 16 16 C 1.38184 * 119.16121 * 359.73172 * 15 14 13 17 17 N 1.31856 * 119.61836 * 275.00174 * 12 11 10 18 18 C 1.52993 * 117.50325 * 153.57490 * 9 7 2 19 19 C 1.52998 * 60.00192 * 252.50683 * 18 9 7 20 20 H 0.97005 * 120.00045 * 359.97438 * 1 2 3 21 21 H 1.00890 * 111.00734 * 83.74297 * 10 9 7 22 22 H 1.09004 * 109.46901 * 307.18464 * 11 10 9 23 23 H 1.08998 * 109.47356 * 67.17733 * 11 10 9 24 24 H 1.07998 * 120.42121 * 359.97438 * 13 12 11 25 25 H 1.08000 * 120.79229 * 180.26384 * 14 13 12 26 26 H 1.08000 * 120.42056 * 179.70738 * 15 14 13 27 27 H 1.08005 * 119.61440 * 179.97438 * 16 15 14 28 28 H 1.09000 * 117.50035 * 359.97438 * 18 9 7 29 29 H 1.09005 * 117.49841 * 145.02094 * 18 9 7 30 30 H 1.09003 * 117.49896 * 252.51352 * 19 18 9 31 31 H 1.08999 * 117.49730 * 107.48600 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6155 1.9778 -1.3934 5 1 1.3922 2.6841 0.5778 6 1 3.4822 1.4774 0.8154 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0157 9 6 3.5114 -1.1941 0.0203 10 7 4.1610 -0.5366 -1.1215 11 6 3.4605 -0.8454 -2.3753 12 6 4.2505 -0.3039 -3.5387 13 6 5.1359 -1.1290 -4.2064 14 6 5.8540 -0.6224 -5.2787 15 6 5.6616 0.7042 -5.6340 16 6 4.7628 1.4700 -4.9163 17 7 4.0931 0.9531 -3.9045 18 6 4.2095 -2.4145 0.6236 19 6 4.1992 -1.0861 1.3827 20 1 -0.4850 0.8401 0.0004 21 1 4.2226 0.4601 -0.9778 22 1 3.3576 -1.9258 -2.4774 23 1 2.4721 -0.3861 -2.3619 24 1 5.2640 -2.1564 -3.8991 25 1 6.5496 -1.2448 -5.8218 26 1 6.2077 1.1335 -6.4610 27 1 4.6076 2.5042 -5.1864 28 1 3.5789 -3.2172 1.0060 29 1 5.1509 -2.7295 0.1734 30 1 5.1337 -0.5272 1.4317 31 1 3.5618 -1.0150 2.2640 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261159134.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:00 Heat of formation + Delta-G solvation = 43.189932 kcal Electronic energy + Delta-G solvation = -14398.235112 eV Core-core repulsion = 12065.503337 eV Total energy + Delta-G solvation = -2332.731775 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.06215 -38.96762 -34.88333 -34.36792 -33.26030 -31.55454 -27.78318 -26.55474 -24.34627 -23.26318 -22.51548 -21.13999 -18.67821 -17.82100 -17.24466 -16.95501 -16.44993 -16.03891 -15.70534 -15.03256 -14.82108 -14.41191 -14.11849 -13.64261 -13.44172 -12.97911 -12.87830 -12.56635 -12.34378 -12.11289 -11.79664 -11.14359 -10.93429 -10.77457 -10.43680 -10.28063 -9.89847 -9.25508 -8.40687 -6.45523 0.21994 0.44761 1.27207 1.33792 1.36475 2.24561 2.80803 2.90265 3.27676 3.39094 3.63471 3.91951 4.07646 4.27138 4.32012 4.42810 4.49134 4.59904 4.72757 4.88482 4.91971 4.96510 5.04272 5.16364 5.30234 5.33068 5.45646 5.52858 5.85013 5.89557 6.38265 6.49695 6.64194 7.16686 7.22388 8.74313 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.030261 B = 0.010330 C = 0.008800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.069627 B = 2709.884882 C = 3181.052427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.036 3.964 3 Si 0.912 3.088 4 H -0.258 1.258 5 H -0.296 1.296 6 H -0.239 1.239 7 C -0.502 4.502 8 H 0.039 0.961 9 C 0.121 3.879 10 N -0.643 5.643 11 C 0.126 3.874 12 C 0.113 3.887 13 C -0.159 4.159 14 C -0.072 4.072 15 C -0.169 4.169 16 C 0.078 3.922 17 N -0.528 5.528 18 C -0.146 4.146 19 C -0.182 4.182 20 H 0.266 0.734 21 H 0.317 0.683 22 H 0.085 0.915 23 H 0.021 0.979 24 H 0.148 0.852 25 H 0.172 0.828 26 H 0.172 0.828 27 H 0.171 0.829 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.122 0.609 -10.194 17.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.164 4.164 3 Si 0.737 3.263 4 H -0.183 1.183 5 H -0.223 1.223 6 H -0.163 1.163 7 C -0.541 4.541 8 H 0.057 0.943 9 C 0.031 3.969 10 N -0.275 5.275 11 C -0.003 4.003 12 C -0.024 4.024 13 C -0.180 4.180 14 C -0.098 4.098 15 C -0.188 4.188 16 C -0.079 4.079 17 N -0.238 5.238 18 C -0.184 4.184 19 C -0.221 4.221 20 H 0.075 0.925 21 H 0.136 0.864 22 H 0.103 0.897 23 H 0.039 0.961 24 H 0.165 0.835 25 H 0.189 0.811 26 H 0.189 0.811 27 H 0.188 0.812 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.848 0.733 -9.809 16.986 hybrid contribution -0.793 0.871 -0.039 1.178 sum 13.055 1.604 -9.849 16.432 Atomic orbital electron populations 1.70010 1.07960 1.28006 1.51670 1.25601 0.95116 1.02167 0.93476 0.86324 0.79954 0.79841 0.80175 1.18336 1.22288 1.16288 1.20867 0.89809 0.92948 1.50507 0.94274 1.19364 0.89284 1.00200 0.88039 1.60807 1.51972 1.13355 1.01335 1.20435 0.93658 0.99935 0.86316 1.21296 0.95399 0.89866 0.95812 1.22151 0.96722 1.01970 0.97108 1.22030 0.97213 0.95913 0.94668 1.22501 0.99470 0.94972 1.01880 1.23230 0.92628 1.01326 0.90712 1.67452 1.25512 1.14398 1.16482 1.22851 1.01596 0.90798 1.03151 1.23094 1.01627 1.01575 0.95794 0.92481 0.86384 0.89666 0.96108 0.83455 0.81063 0.81078 0.81177 0.89998 0.87836 0.88971 0.90269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.16 13.96 21.45 0.30 -58.86 16 2 C 0.04 2.12 4.92 84.65 0.42 2.54 16 3 Si 0.91 45.74 24.03 68.60 1.65 47.39 16 4 H -0.26 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.30 -14.87 7.11 99.48 0.71 -14.17 16 6 H -0.24 -11.14 6.43 99.48 0.64 -10.51 16 7 C -0.50 -28.66 8.15 25.60 0.21 -28.45 16 8 H 0.04 2.48 8.06 -2.91 -0.02 2.45 16 9 C 0.12 5.70 1.26 2.78 0.00 5.70 16 10 N -0.64 -28.39 6.27 -477.88 -3.00 -31.39 16 11 C 0.13 5.51 5.01 85.55 0.43 5.94 16 12 C 0.11 4.20 6.35 42.55 0.27 4.47 16 13 C -0.16 -4.48 9.72 22.36 0.22 -4.27 16 14 C -0.07 -1.50 10.18 22.47 0.23 -1.27 16 15 C -0.17 -3.42 10.11 22.36 0.23 -3.19 16 16 C 0.08 2.15 11.18 84.67 0.95 3.10 16 17 N -0.53 -19.98 10.27 -183.89 -1.89 -21.87 16 18 C -0.15 -5.81 10.16 30.59 0.31 -5.50 16 19 C -0.18 -7.61 9.27 30.59 0.28 -7.33 16 20 H 0.27 15.92 8.31 -92.70 -0.77 15.15 16 21 H 0.32 14.58 5.69 -89.70 -0.51 14.07 16 22 H 0.09 3.57 8.01 -2.38 -0.02 3.55 16 23 H 0.02 1.08 6.35 -2.39 -0.02 1.06 16 24 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 25 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16 26 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 27 H 0.17 3.68 8.06 -2.91 -0.02 3.65 16 28 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 29 H 0.10 3.59 8.14 -2.38 -0.02 3.57 16 30 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 31 H 0.08 3.39 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -69.90 262.70 1.15 -68.76 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.54 Total: 24.23 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: 3.54 Total: -28.26 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -4.59 Total: -112.12 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.65 Total: 47.39 kcal Total: -69.90 1.15 -68.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261159134.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.945 kcal (2) G-P(sol) polarization free energy of solvation -69.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds