Wall clock time and date at job start Mon Mar 30 2020 02:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00031 * 2 1 4 4 H 1.48506 * 109.47099 * 90.00385 * 3 2 1 5 5 H 1.48503 * 109.47056 * 210.00144 * 3 2 1 6 6 H 1.48496 * 109.47173 * 329.99900 * 3 2 1 7 7 C 1.37884 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99821 * 175.15558 * 7 2 1 9 9 C 1.50691 * 119.99879 * 355.15602 * 7 2 1 10 10 N 1.46910 * 115.54956 * 275.22615 * 9 7 2 11 11 C 1.46900 * 110.99707 * 294.70685 * 10 9 7 12 12 C 1.50706 * 109.46320 * 175.68268 * 11 10 9 13 13 C 1.38649 * 120.79140 * 269.71382 * 12 11 10 14 14 C 1.38196 * 119.16334 * 179.80213 * 13 12 11 15 15 N 1.31870 * 120.76278 * 0.49257 * 14 13 12 16 16 C 1.31873 * 121.72579 * 359.74050 * 15 14 13 17 17 C 1.38201 * 120.76465 * 0.02562 * 16 15 14 18 18 C 1.53001 * 117.49988 * 129.56013 * 9 7 2 19 19 C 1.52998 * 117.50354 * 60.90030 * 9 7 2 20 20 H 0.96996 * 119.99826 * 359.97438 * 1 2 3 21 21 H 1.00899 * 110.99620 * 170.75355 * 10 9 7 22 22 H 1.08997 * 109.47362 * 295.68386 * 11 10 9 23 23 H 1.08993 * 109.46975 * 55.68648 * 11 10 9 24 24 H 1.08004 * 120.41580 * 0.02562 * 13 12 11 25 25 H 1.08001 * 119.62409 * 180.21169 * 14 13 12 26 26 H 1.08004 * 119.61616 * 180.02562 * 16 15 14 27 27 H 1.07994 * 120.41665 * 179.97438 * 17 16 15 28 28 H 1.09005 * 117.49773 * 359.97438 * 18 9 7 29 29 H 1.09004 * 117.50059 * 145.01496 * 18 9 7 30 30 H 1.09000 * 117.50104 * 214.98023 * 19 9 7 31 31 H 1.09003 * 117.49927 * 359.97111 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4401 -0.7001 6 1 1.4466 2.6526 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0816 -1.1958 -0.0795 9 6 1.2550 -2.4968 0.1091 10 7 0.9320 -2.9290 1.4755 11 6 2.1529 -3.2319 2.2342 12 6 1.7892 -3.5682 3.6576 13 6 1.7242 -2.5784 4.6263 14 6 1.3832 -2.9238 5.9202 15 7 1.1312 -4.1782 6.2393 16 6 1.1881 -5.1460 5.3453 17 6 1.5177 -4.8756 4.0307 18 6 1.5743 -3.5842 -0.9188 19 6 0.2464 -2.8266 -0.9931 20 1 -0.4850 0.8400 0.0004 21 1 0.3064 -3.7205 1.4660 22 1 2.6623 -4.0812 1.7790 23 1 2.8123 -2.3641 2.2230 24 1 1.9337 -1.5498 4.3720 25 1 1.3270 -2.1583 6.6799 26 1 0.9747 -6.1618 5.6440 27 1 1.5631 -5.6725 3.3033 28 1 2.3262 -3.3572 -1.6746 29 1 1.5444 -4.6203 -0.5813 30 1 -0.6567 -3.3644 -0.7044 31 1 0.1245 -2.1009 -1.7973 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261165348.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:45 Heat of formation + Delta-G solvation = 60.247425 kcal Electronic energy + Delta-G solvation = -14137.890543 eV Core-core repulsion = 11805.898437 eV Total energy + Delta-G solvation = -2331.992106 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.81421 -37.11320 -33.88363 -31.99376 -30.91060 -30.38245 -25.61305 -25.06610 -23.14233 -21.50766 -20.89486 -19.54664 -16.34929 -16.19723 -16.00794 -15.29963 -14.68205 -14.27000 -14.21821 -13.54497 -13.41665 -12.73566 -12.51765 -12.15773 -11.55918 -11.16984 -11.02770 -10.96364 -10.55684 -10.26841 -9.91724 -9.33555 -9.26623 -9.17555 -8.87327 -8.71704 -8.28673 -7.04701 -6.03818 -4.15004 1.41761 1.57260 3.27465 3.34909 3.36565 4.08872 4.36936 4.68352 4.96123 5.07262 5.20692 5.33250 5.39871 5.49403 5.62082 5.87990 5.92124 6.13327 6.23840 6.27833 6.37551 6.46472 6.65326 6.71404 6.87640 7.00743 7.11190 7.45056 7.72633 7.94054 8.20566 8.49220 8.62250 8.91157 9.53487 11.03903 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.029613 B = 0.008531 C = 0.007159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.313747 B = 3281.359426 C = 3910.091390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.084 3.916 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.274 1.274 6 H -0.286 1.286 7 C -0.496 4.496 8 H 0.059 0.941 9 C 0.219 3.781 10 N -0.637 5.637 11 C 0.104 3.896 12 C -0.021 4.021 13 C -0.148 4.148 14 C 0.090 3.910 15 N -0.498 5.498 16 C 0.089 3.911 17 C -0.174 4.174 18 C -0.256 4.256 19 C -0.147 4.147 20 H 0.259 0.741 21 H 0.310 0.690 22 H 0.026 0.974 23 H 0.091 0.909 24 H 0.137 0.863 25 H 0.151 0.849 26 H 0.149 0.851 27 H 0.127 0.873 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.712 -6.456 6.035 9.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.122 4.122 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.199 1.199 6 H -0.212 1.212 7 C -0.535 4.535 8 H 0.077 0.923 9 C 0.130 3.870 10 N -0.264 5.264 11 C -0.024 4.024 12 C -0.030 4.030 13 C -0.169 4.169 14 C -0.066 4.066 15 N -0.207 5.207 16 C -0.068 4.068 17 C -0.194 4.194 18 C -0.296 4.296 19 C -0.185 4.185 20 H 0.069 0.931 21 H 0.127 0.873 22 H 0.044 0.956 23 H 0.110 0.890 24 H 0.155 0.845 25 H 0.168 0.832 26 H 0.166 0.834 27 H 0.145 0.855 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.264 -5.883 7.146 9.529 hybrid contribution 0.742 0.195 -1.348 1.551 sum 3.006 -5.689 5.798 8.661 Atomic orbital electron populations 1.70044 1.05902 1.26344 1.46998 1.24959 0.94716 0.98766 0.93764 0.86675 0.79945 0.83561 0.78241 1.20474 1.19898 1.21206 1.20144 0.92291 0.88290 1.52750 0.92329 1.19083 0.96663 0.91321 0.79939 1.60702 1.12190 1.37674 1.15870 1.20718 0.94229 1.00151 0.87346 1.20592 0.92972 0.92586 0.96820 1.22134 1.00204 1.00939 0.93585 1.22695 0.95479 0.93189 0.95258 1.67606 1.14477 1.01095 1.37552 1.22597 0.96318 0.98312 0.89539 1.22049 1.02386 0.97247 0.97742 1.23644 1.01179 0.96304 1.08522 1.22597 0.90613 1.01377 1.03916 0.93067 0.87326 0.95567 0.89025 0.84483 0.83162 0.83387 0.85455 0.90336 0.92253 0.91934 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.03 12.66 55.43 0.70 -23.33 16 2 C 0.08 2.26 5.43 -17.82 -0.10 2.17 16 3 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.50 -13.15 8.18 -34.44 -0.28 -13.43 16 8 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 9 C 0.22 5.27 1.70 -132.75 -0.23 5.04 16 10 N -0.64 -13.94 6.62 -102.39 -0.68 -14.62 16 11 C 0.10 1.97 5.75 -4.97 -0.03 1.94 16 12 C -0.02 -0.35 5.47 -104.32 -0.57 -0.92 16 13 C -0.15 -2.41 9.82 -39.45 -0.39 -2.80 16 14 C 0.09 1.35 11.18 -17.55 -0.20 1.15 16 15 N -0.50 -7.77 10.36 -13.25 -0.14 -7.90 16 16 C 0.09 1.25 11.18 -17.55 -0.20 1.06 16 17 C -0.17 -2.54 9.82 -39.44 -0.39 -2.92 16 18 C -0.26 -5.51 10.13 -26.69 -0.27 -5.78 16 19 C -0.15 -3.43 9.22 -26.70 -0.25 -3.68 16 20 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 21 H 0.31 6.36 8.65 -39.29 -0.34 6.02 16 22 H 0.03 0.47 8.10 -51.93 -0.42 0.05 16 23 H 0.09 1.88 7.41 -51.93 -0.39 1.50 16 24 H 0.14 2.21 8.06 -52.48 -0.42 1.79 16 25 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 26 H 0.15 1.61 8.06 -52.48 -0.42 1.19 16 27 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.09 2.23 8.14 -51.93 -0.42 1.81 16 LS Contribution 273.47 15.07 4.12 4.12 Total: -1.00 -28.85 273.47 -7.97 -36.82 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -4.07 Total: 7.52 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -2.89 Total: -18.18 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: -0.11 Total: -45.86 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.85 -7.97 -36.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261165348.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.067 kcal (2) G-P(sol) polarization free energy of solvation -28.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds