Wall clock time and date at job start Mon Mar 30 2020 02:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00031 * 2 1 4 4 H 1.48506 * 109.47099 * 90.00385 * 3 2 1 5 5 H 1.48503 * 109.47056 * 210.00144 * 3 2 1 6 6 H 1.48496 * 109.47173 * 329.99900 * 3 2 1 7 7 C 1.37884 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99821 * 175.15558 * 7 2 1 9 9 C 1.50691 * 119.99879 * 355.15602 * 7 2 1 10 10 N 1.46910 * 115.54956 * 275.22615 * 9 7 2 11 11 C 1.46900 * 110.99707 * 294.70685 * 10 9 7 12 12 C 1.50706 * 109.46320 * 175.68268 * 11 10 9 13 13 C 1.38649 * 120.79140 * 269.71382 * 12 11 10 14 14 C 1.38196 * 119.16334 * 179.80213 * 13 12 11 15 15 N 1.31870 * 120.76278 * 0.49257 * 14 13 12 16 16 C 1.31873 * 121.72579 * 359.74050 * 15 14 13 17 17 C 1.38201 * 120.76465 * 0.02562 * 16 15 14 18 18 C 1.53001 * 117.49988 * 129.56013 * 9 7 2 19 19 C 1.52998 * 117.50354 * 60.90030 * 9 7 2 20 20 H 0.96996 * 119.99826 * 359.97438 * 1 2 3 21 21 H 1.00899 * 110.99620 * 170.75355 * 10 9 7 22 22 H 1.08997 * 109.47362 * 295.68386 * 11 10 9 23 23 H 1.08993 * 109.46975 * 55.68648 * 11 10 9 24 24 H 1.08004 * 120.41580 * 0.02562 * 13 12 11 25 25 H 1.08001 * 119.62409 * 180.21169 * 14 13 12 26 26 H 1.08004 * 119.61616 * 180.02562 * 16 15 14 27 27 H 1.07994 * 120.41665 * 179.97438 * 17 16 15 28 28 H 1.09005 * 117.49773 * 359.97438 * 18 9 7 29 29 H 1.09004 * 117.50059 * 145.01496 * 18 9 7 30 30 H 1.09000 * 117.50104 * 214.98023 * 19 9 7 31 31 H 1.09003 * 117.49927 * 359.97111 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4401 -0.7001 6 1 1.4466 2.6526 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0816 -1.1958 -0.0795 9 6 1.2550 -2.4968 0.1091 10 7 0.9320 -2.9290 1.4755 11 6 2.1529 -3.2319 2.2342 12 6 1.7892 -3.5682 3.6576 13 6 1.7242 -2.5784 4.6263 14 6 1.3832 -2.9238 5.9202 15 7 1.1312 -4.1782 6.2393 16 6 1.1881 -5.1460 5.3453 17 6 1.5177 -4.8756 4.0307 18 6 1.5743 -3.5842 -0.9188 19 6 0.2464 -2.8266 -0.9931 20 1 -0.4850 0.8400 0.0004 21 1 0.3064 -3.7205 1.4660 22 1 2.6623 -4.0812 1.7790 23 1 2.8123 -2.3641 2.2230 24 1 1.9337 -1.5498 4.3720 25 1 1.3270 -2.1583 6.6799 26 1 0.9747 -6.1618 5.6440 27 1 1.5631 -5.6725 3.3033 28 1 2.3262 -3.3572 -1.6746 29 1 1.5444 -4.6203 -0.5813 30 1 -0.6567 -3.3644 -0.7044 31 1 0.1245 -2.1009 -1.7973 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261165348.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:45 Heat of formation + Delta-G solvation = 41.991186 kcal Electronic energy + Delta-G solvation = -14138.682193 eV Core-core repulsion = 11805.898437 eV Total energy + Delta-G solvation = -2332.783756 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.00304 -38.86352 -35.34484 -33.98863 -32.05608 -31.86947 -27.62193 -26.53480 -24.29877 -23.08344 -22.41026 -21.42657 -18.14058 -17.59885 -17.22379 -16.65345 -16.45068 -15.98760 -15.80971 -14.90472 -14.55253 -14.37812 -13.97372 -13.86978 -13.08816 -13.06458 -12.82999 -12.43029 -12.33163 -12.07597 -11.69761 -11.12808 -10.69116 -10.59837 -10.40957 -10.14966 -10.01094 -8.74275 -8.06889 -6.23255 0.27573 0.34128 1.42585 1.44502 1.52712 2.43201 2.88905 3.18623 3.49232 3.61674 3.68473 3.90120 4.03808 4.27449 4.29157 4.49029 4.51227 4.60296 4.73216 4.81764 4.93040 4.96190 5.06474 5.13280 5.29485 5.55436 5.60603 5.69658 5.84545 6.10707 6.68886 6.75855 7.02349 7.06104 7.48072 9.00066 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.029613 B = 0.008531 C = 0.007159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.313747 B = 3281.359426 C = 3910.091390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.039 3.961 3 Si 0.947 3.053 4 H -0.276 1.276 5 H -0.269 1.269 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.051 0.949 9 C 0.198 3.802 10 N -0.649 5.649 11 C 0.114 3.886 12 C -0.038 4.038 13 C -0.165 4.165 14 C 0.090 3.910 15 N -0.512 5.512 16 C 0.091 3.909 17 C -0.170 4.170 18 C -0.230 4.230 19 C -0.155 4.155 20 H 0.258 0.742 21 H 0.319 0.681 22 H 0.039 0.961 23 H 0.067 0.933 24 H 0.128 0.872 25 H 0.175 0.825 26 H 0.184 0.816 27 H 0.151 0.849 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.104 -7.694 6.904 10.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.164 4.164 3 Si 0.773 3.227 4 H -0.202 1.202 5 H -0.193 1.193 6 H -0.211 1.211 7 C -0.548 4.548 8 H 0.069 0.931 9 C 0.108 3.892 10 N -0.277 5.277 11 C -0.015 4.015 12 C -0.047 4.047 13 C -0.186 4.186 14 C -0.066 4.066 15 N -0.222 5.222 16 C -0.065 4.065 17 C -0.190 4.190 18 C -0.270 4.270 19 C -0.193 4.193 20 H 0.067 0.933 21 H 0.137 0.863 22 H 0.057 0.943 23 H 0.085 0.915 24 H 0.146 0.854 25 H 0.192 0.808 26 H 0.201 0.799 27 H 0.168 0.832 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.671 -7.128 8.018 11.056 hybrid contribution 0.637 0.506 -1.594 1.789 sum 3.308 -6.623 6.424 9.802 Atomic orbital electron populations 1.70152 1.07113 1.26837 1.48472 1.25623 0.95424 1.01714 0.93638 0.85747 0.78866 0.79904 0.78189 1.20206 1.19347 1.21079 1.20428 0.92212 0.89886 1.52318 0.93061 1.19063 0.97199 0.91666 0.81245 1.60459 1.13749 1.38574 1.14931 1.20572 0.92808 0.99509 0.88576 1.20497 0.94608 0.93972 0.95608 1.22181 1.01294 1.00634 0.94461 1.23025 0.94605 0.93789 0.95175 1.67698 1.14821 1.01468 1.38185 1.23176 0.94782 0.99529 0.89021 1.22264 1.01383 0.96689 0.98631 1.23602 0.99464 0.97084 1.06896 1.22493 0.91881 1.01683 1.03289 0.93298 0.86339 0.94301 0.91491 0.85405 0.80831 0.79928 0.83172 0.90584 0.89449 0.90896 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.55 12.66 21.45 0.27 -50.28 16 2 C 0.04 2.12 5.43 84.66 0.46 2.58 16 3 Si 0.95 42.71 29.54 68.60 2.03 44.73 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.51 -27.24 8.18 25.60 0.21 -27.03 16 8 H 0.05 2.73 7.82 -2.91 -0.02 2.71 16 9 C 0.20 9.47 1.70 2.78 0.00 9.47 16 10 N -0.65 -28.01 6.62 -477.87 -3.17 -31.18 16 11 C 0.11 4.23 5.75 85.56 0.49 4.72 16 12 C -0.04 -1.24 5.47 -19.67 -0.11 -1.35 16 13 C -0.17 -5.29 9.82 22.36 0.22 -5.07 16 14 C 0.09 2.55 11.18 84.68 0.95 3.50 16 15 N -0.51 -14.74 10.36 -195.85 -2.03 -16.77 16 16 C 0.09 2.28 11.18 84.68 0.95 3.23 16 17 C -0.17 -4.49 9.82 22.36 0.22 -4.27 16 18 C -0.23 -9.57 10.13 30.62 0.31 -9.26 16 19 C -0.16 -7.23 9.22 30.62 0.28 -6.95 16 20 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 21 H 0.32 12.65 8.65 -89.69 -0.78 11.88 16 22 H 0.04 1.33 8.10 -2.39 -0.02 1.31 16 23 H 0.07 2.79 7.41 -2.39 -0.02 2.77 16 24 H 0.13 4.22 8.06 -2.91 -0.02 4.19 16 25 H 0.17 3.91 8.06 -2.91 -0.02 3.88 16 26 H 0.18 3.19 8.06 -2.91 -0.02 3.16 16 27 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 28 H 0.08 3.18 8.14 -2.38 -0.02 3.16 16 29 H 0.09 3.13 8.14 -2.38 -0.02 3.11 16 30 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 31 H 0.06 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -60.87 273.47 1.43 -59.44 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.34 Total: 24.47 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 3.98 Total: -30.42 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -4.92 Total: -98.23 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -60.87 1.43 -59.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261165348.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.435 kcal (2) G-P(sol) polarization free energy of solvation -60.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds