Wall clock time and date at job start Mon Mar 30 2020 02:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31585 * 1 3 3 Si 1.86795 * 120.00389 * 2 1 4 4 H 1.48499 * 109.47284 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47024 * 300.00065 * 3 2 1 6 6 H 1.48502 * 109.47285 * 60.00142 * 3 2 1 7 7 C 1.38803 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99935 * 209.42769 * 7 2 1 9 9 N 1.36845 * 119.99905 * 29.42546 * 7 2 1 10 10 C 1.39324 * 119.99587 * 146.89894 * 9 7 2 11 11 C 1.39487 * 120.50590 * 298.53951 * 10 9 7 12 12 C 1.38438 * 118.34330 * 180.02562 * 11 10 9 13 13 C 1.38320 * 119.25925 * 0.02562 * 12 11 10 14 14 N 1.31886 * 120.95864 * 359.97438 * 13 12 11 15 15 C 1.31779 * 121.81724 * 359.71267 * 14 13 12 16 16 C 1.46492 * 120.00030 * 326.89630 * 9 7 2 17 17 C 1.53785 * 113.61337 * 213.30580 * 16 9 7 18 18 C 1.53777 * 87.08021 * 89.11736 * 17 16 9 19 19 C 1.53781 * 87.08294 * 25.43463 * 18 17 16 20 20 H 0.96999 * 120.00011 * 6.80180 * 1 2 3 21 21 H 1.08002 * 120.82893 * 359.97438 * 11 10 9 22 22 H 1.07999 * 120.37374 * 180.02562 * 12 11 10 23 23 H 1.07993 * 119.52283 * 179.97438 * 13 12 11 24 24 H 1.08004 * 119.68477 * 180.28619 * 15 14 13 25 25 H 1.08997 * 112.90954 * 82.05708 * 16 9 7 26 26 H 1.08998 * 113.61402 * 334.56622 * 17 16 9 27 27 H 1.09007 * 113.69036 * 203.67654 * 17 16 9 28 28 H 1.09002 * 113.61217 * 139.98076 * 18 17 16 29 29 H 1.08997 * 113.61703 * 270.88108 * 18 17 16 30 30 H 1.08992 * 113.61756 * 89.11383 * 19 18 17 31 31 H 1.09002 * 113.60957 * 220.01950 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 3.7099 1.3462 -0.0006 5 1 1.8912 2.3963 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0098 -1.2021 -0.0005 8 1 2.9853 -1.2627 0.4590 9 7 1.4579 -2.3105 -0.5833 10 6 2.2763 -3.2507 -1.2057 11 6 3.0635 -2.8906 -2.2995 12 6 3.8595 -3.8608 -2.8841 13 6 3.8484 -5.1447 -2.3696 14 7 3.0928 -5.4540 -1.3339 15 6 2.3246 -4.5611 -0.7429 16 6 0.0068 -2.5084 -0.5526 17 6 -0.4117 -3.9856 -0.4648 18 6 -0.3468 -3.8316 1.0639 19 6 -0.6096 -2.3323 0.8453 20 1 -0.4850 0.8341 -0.0995 21 1 3.0516 -1.8805 -2.6814 22 1 4.4822 -3.6179 -3.7324 23 1 4.4674 -5.9049 -2.8226 24 1 1.7231 -4.8510 0.1059 25 1 -0.5138 -1.9527 -1.3324 26 1 0.3314 -4.6745 -0.8662 27 1 -1.4160 -4.1794 -0.8419 28 1 -1.1529 -4.3441 1.5889 29 1 0.6362 -4.0461 1.4830 30 1 -1.6680 -2.0727 0.8262 31 1 -0.0261 -1.6866 1.5016 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261170929.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:47 Heat of formation + Delta-G solvation = 91.529031 kcal Electronic energy + Delta-G solvation = -14953.300486 eV Core-core repulsion = 12622.664852 eV Total energy + Delta-G solvation = -2330.635634 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.61347 -37.77899 -34.12642 -32.14411 -31.04725 -28.66280 -25.25449 -24.43749 -23.52299 -22.44183 -21.13633 -18.67343 -16.91416 -16.20202 -15.74969 -15.42994 -14.49363 -14.25275 -13.94127 -13.15056 -12.95518 -12.63657 -12.10023 -11.86246 -11.55317 -11.17486 -11.02085 -10.72322 -10.64205 -10.33807 -9.82441 -9.70598 -9.14950 -8.89730 -8.76026 -8.45801 -8.16263 -6.91268 -6.39802 -3.62716 2.02473 2.24733 3.18961 3.29636 3.33528 4.17793 4.64886 4.88498 5.04635 5.38009 5.63537 5.68136 5.73431 5.89998 5.97346 6.00687 6.19292 6.38616 6.45448 6.53188 6.66129 6.71169 7.00949 7.09217 7.19501 7.29892 7.44019 7.51646 7.58199 7.70260 8.10775 8.79982 8.87055 9.43753 9.87131 10.65870 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.026329 B = 0.013163 C = 0.009413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.209709 B = 2126.736979 C = 2973.806240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.046 3.954 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.286 1.286 7 C -0.290 4.290 8 H 0.081 0.919 9 N -0.497 5.497 10 C 0.167 3.833 11 C -0.128 4.128 12 C -0.150 4.150 13 C 0.015 3.985 14 N -0.472 5.472 15 C 0.028 3.972 16 C 0.182 3.818 17 C -0.185 4.185 18 C -0.151 4.151 19 C -0.089 4.089 20 H 0.264 0.736 21 H 0.123 0.877 22 H 0.116 0.884 23 H 0.136 0.864 24 H 0.149 0.851 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.925 -3.841 -2.169 4.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.212 1.212 7 C -0.416 4.416 8 H 0.099 0.901 9 N -0.201 5.201 10 C 0.061 3.939 11 C -0.158 4.158 12 C -0.171 4.171 13 C -0.144 4.144 14 N -0.181 5.181 15 C -0.135 4.135 16 C 0.078 3.922 17 C -0.224 4.224 18 C -0.189 4.189 19 C -0.128 4.128 20 H 0.074 0.926 21 H 0.141 0.859 22 H 0.134 0.866 23 H 0.153 0.847 24 H 0.166 0.834 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.635 -4.398 -1.664 4.745 hybrid contribution 0.357 1.925 -0.459 2.011 sum 0.992 -2.473 -2.123 3.407 Atomic orbital electron populations 1.70379 1.05976 1.27656 1.43921 1.25329 0.95153 0.98560 0.96904 0.86624 0.81044 0.84029 0.77772 1.19524 1.20784 1.21214 1.19074 1.03050 0.86510 1.32921 0.90085 1.41641 1.01564 1.21073 1.55855 1.18646 0.93717 0.90293 0.91281 1.21709 1.00001 0.99951 0.94151 1.21819 0.99904 0.94520 1.00882 1.22110 1.00590 0.95067 0.96611 1.67389 1.05392 1.36616 1.08739 1.23055 0.99275 0.91065 1.00101 1.21535 0.82387 0.90600 0.97680 1.23838 1.00999 1.00118 0.97400 1.22995 1.00269 1.00170 0.95467 1.22656 0.99211 0.92228 0.98670 0.92577 0.85867 0.86623 0.84702 0.83438 0.92610 0.90842 0.91156 0.93485 0.91059 0.92161 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.29 8.97 55.49 0.50 -20.79 16 2 C 0.05 1.14 5.15 -17.45 -0.09 1.05 16 3 Si 0.88 19.54 29.65 -169.99 -5.04 14.50 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.29 -7.37 8.43 -15.11 -0.13 -7.49 16 8 H 0.08 2.11 7.98 -52.49 -0.42 1.69 16 9 N -0.50 -11.85 2.80 -105.09 -0.29 -12.15 16 10 C 0.17 3.73 5.18 -83.69 -0.43 3.29 16 11 C -0.13 -2.64 9.85 -39.04 -0.38 -3.03 16 12 C -0.15 -2.67 10.10 -39.48 -0.40 -3.07 16 13 C 0.01 0.27 11.18 -17.50 -0.20 0.07 16 14 N -0.47 -9.59 10.35 -13.03 -0.13 -9.73 16 15 C 0.03 0.59 8.60 -17.27 -0.15 0.44 16 16 C 0.18 4.13 3.22 -67.12 -0.22 3.92 16 17 C -0.19 -3.61 7.04 -25.92 -0.18 -3.79 16 18 C -0.15 -2.90 7.59 -25.92 -0.20 -3.09 16 19 C -0.09 -1.94 5.91 -25.92 -0.15 -2.09 16 20 H 0.26 6.41 8.33 -40.82 -0.34 6.07 16 21 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 22 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 23 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 24 H 0.15 3.05 4.89 -52.48 -0.26 2.79 16 25 H 0.06 1.38 7.72 -51.93 -0.40 0.98 16 26 H 0.07 1.46 4.39 -51.93 -0.23 1.23 16 27 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.42 6.89 -51.93 -0.36 1.06 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.08 2.08 6.35 -51.93 -0.33 1.75 16 LS Contribution 250.50 15.07 3.78 3.78 Total: -1.00 -25.81 250.50 -7.39 -33.20 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -3.66 Total: 4.98 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -2.53 Total: -13.79 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.07 Total: -42.66 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.04 Total: 14.50 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -25.81 -7.39 -33.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261170929.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.730 kcal (2) G-P(sol) polarization free energy of solvation -25.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds