Wall clock time and date at job start Mon Mar 30 2020 02:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31585 * 1 3 3 Si 1.86795 * 120.00389 * 2 1 4 4 H 1.48499 * 109.47284 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47024 * 300.00065 * 3 2 1 6 6 H 1.48502 * 109.47285 * 60.00142 * 3 2 1 7 7 C 1.38803 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99935 * 209.42769 * 7 2 1 9 9 N 1.36845 * 119.99905 * 29.42546 * 7 2 1 10 10 C 1.39324 * 119.99587 * 146.89894 * 9 7 2 11 11 C 1.39487 * 120.50590 * 298.53951 * 10 9 7 12 12 C 1.38438 * 118.34330 * 180.02562 * 11 10 9 13 13 C 1.38320 * 119.25925 * 0.02562 * 12 11 10 14 14 N 1.31886 * 120.95864 * 359.97438 * 13 12 11 15 15 C 1.31779 * 121.81724 * 359.71267 * 14 13 12 16 16 C 1.46492 * 120.00030 * 326.89630 * 9 7 2 17 17 C 1.53785 * 113.61337 * 213.30580 * 16 9 7 18 18 C 1.53777 * 87.08021 * 89.11736 * 17 16 9 19 19 C 1.53781 * 87.08294 * 25.43463 * 18 17 16 20 20 H 0.96999 * 120.00011 * 6.80180 * 1 2 3 21 21 H 1.08002 * 120.82893 * 359.97438 * 11 10 9 22 22 H 1.07999 * 120.37374 * 180.02562 * 12 11 10 23 23 H 1.07993 * 119.52283 * 179.97438 * 13 12 11 24 24 H 1.08004 * 119.68477 * 180.28619 * 15 14 13 25 25 H 1.08997 * 112.90954 * 82.05708 * 16 9 7 26 26 H 1.08998 * 113.61402 * 334.56622 * 17 16 9 27 27 H 1.09007 * 113.69036 * 203.67654 * 17 16 9 28 28 H 1.09002 * 113.61217 * 139.98076 * 18 17 16 29 29 H 1.08997 * 113.61703 * 270.88108 * 18 17 16 30 30 H 1.08992 * 113.61756 * 89.11383 * 19 18 17 31 31 H 1.09002 * 113.60957 * 220.01950 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 3.7099 1.3462 -0.0006 5 1 1.8912 2.3963 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0098 -1.2021 -0.0005 8 1 2.9853 -1.2627 0.4590 9 7 1.4579 -2.3105 -0.5833 10 6 2.2763 -3.2507 -1.2057 11 6 3.0635 -2.8906 -2.2995 12 6 3.8595 -3.8608 -2.8841 13 6 3.8484 -5.1447 -2.3696 14 7 3.0928 -5.4540 -1.3339 15 6 2.3246 -4.5611 -0.7429 16 6 0.0068 -2.5084 -0.5526 17 6 -0.4117 -3.9856 -0.4648 18 6 -0.3468 -3.8316 1.0639 19 6 -0.6096 -2.3323 0.8453 20 1 -0.4850 0.8341 -0.0995 21 1 3.0516 -1.8805 -2.6814 22 1 4.4822 -3.6179 -3.7324 23 1 4.4674 -5.9049 -2.8226 24 1 1.7231 -4.8510 0.1059 25 1 -0.5138 -1.9527 -1.3324 26 1 0.3314 -4.6745 -0.8662 27 1 -1.4160 -4.1794 -0.8419 28 1 -1.1529 -4.3441 1.5889 29 1 0.6362 -4.0461 1.4830 30 1 -1.6680 -2.0727 0.8262 31 1 -0.0261 -1.6866 1.5016 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261170929.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:47 Heat of formation + Delta-G solvation = 78.036955 kcal Electronic energy + Delta-G solvation = -14953.885546 eV Core-core repulsion = 12622.664852 eV Total energy + Delta-G solvation = -2331.220694 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.24521 -39.41014 -35.83843 -33.92443 -32.61448 -30.34203 -27.02621 -26.11234 -25.18250 -24.03099 -22.77476 -20.39743 -18.63889 -17.77664 -17.44089 -17.13948 -16.13223 -15.97075 -15.67672 -14.71960 -14.59986 -14.26264 -13.78142 -13.55408 -13.28759 -12.84254 -12.69925 -12.36895 -12.35672 -12.09984 -11.49169 -11.40404 -10.85583 -10.51152 -10.34301 -10.29592 -9.76559 -8.67650 -8.25077 -5.52720 0.47740 0.64293 1.40308 1.46476 1.55180 2.36819 2.93529 3.18429 3.31529 3.86101 4.02748 4.07860 4.28590 4.31568 4.37486 4.49374 4.54634 4.84851 4.89964 4.96140 5.06255 5.15507 5.36950 5.45487 5.50423 5.55431 5.68800 5.80670 5.85638 6.02371 6.25575 6.96580 7.28864 7.66865 8.07195 8.80557 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.026329 B = 0.013163 C = 0.009413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.209709 B = 2126.736979 C = 2973.806240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.010 3.990 3 Si 0.937 3.063 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.287 1.287 7 C -0.304 4.304 8 H 0.064 0.936 9 N -0.517 5.517 10 C 0.144 3.856 11 C -0.139 4.139 12 C -0.139 4.139 13 C 0.030 3.970 14 N -0.487 5.487 15 C 0.026 3.974 16 C 0.176 3.824 17 C -0.169 4.169 18 C -0.135 4.135 19 C -0.086 4.086 20 H 0.261 0.739 21 H 0.116 0.884 22 H 0.158 0.842 23 H 0.178 0.822 24 H 0.148 0.852 25 H 0.023 0.977 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.960 -5.388 -3.235 6.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.193 4.193 3 Si 0.763 3.237 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.214 1.214 7 C -0.431 4.431 8 H 0.082 0.918 9 N -0.224 5.224 10 C 0.041 3.959 11 C -0.169 4.169 12 C -0.160 4.160 13 C -0.129 4.129 14 N -0.196 5.196 15 C -0.135 4.135 16 C 0.071 3.929 17 C -0.207 4.207 18 C -0.172 4.172 19 C -0.124 4.124 20 H 0.071 0.929 21 H 0.135 0.865 22 H 0.176 0.824 23 H 0.195 0.805 24 H 0.165 0.835 25 H 0.041 0.959 26 H 0.090 0.910 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.696 -5.978 -2.737 6.790 hybrid contribution 0.181 2.236 -0.249 2.257 sum 1.877 -3.742 -2.986 5.142 Atomic orbital electron populations 1.70461 1.06569 1.27775 1.45377 1.25797 0.95767 1.00524 0.97242 0.85751 0.79723 0.80969 0.77290 1.19664 1.20912 1.21406 1.18998 1.02459 0.87621 1.34039 0.91794 1.41569 1.01854 1.21507 1.57501 1.18933 0.94166 0.90765 0.92082 1.21917 1.00254 1.00546 0.94224 1.22223 0.98926 0.93539 1.01270 1.22910 0.98963 0.96136 0.94871 1.67481 1.05881 1.36481 1.09738 1.23046 0.99468 0.90726 1.00238 1.21416 0.82033 0.92456 0.96978 1.23737 1.01854 0.97583 0.97527 1.22837 1.00718 0.98086 0.95584 1.22520 0.98653 0.93555 0.97710 0.92867 0.86548 0.82440 0.80452 0.83513 0.95918 0.91005 0.89119 0.90551 0.92034 0.91857 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -45.26 8.97 21.65 0.19 -45.07 16 2 C 0.01 0.50 5.15 84.86 0.44 0.94 16 3 Si 0.94 41.37 29.65 68.60 2.03 43.41 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 7 C -0.30 -16.03 8.43 84.05 0.71 -15.32 16 8 H 0.06 3.48 7.98 -2.91 -0.02 3.45 16 9 N -0.52 -25.25 2.80 -486.39 -1.36 -26.61 16 10 C 0.14 6.40 5.18 38.45 0.20 6.60 16 11 C -0.14 -5.58 9.85 22.62 0.22 -5.36 16 12 C -0.14 -4.42 10.10 22.34 0.23 -4.19 16 13 C 0.03 0.95 11.18 84.70 0.95 1.89 16 14 N -0.49 -18.41 10.35 -195.13 -2.02 -20.43 16 15 C 0.03 1.08 8.60 84.90 0.73 1.81 16 16 C 0.18 8.15 3.22 45.52 0.15 8.30 16 17 C -0.17 -6.44 7.04 31.12 0.22 -6.22 16 18 C -0.13 -5.05 7.59 31.12 0.24 -4.81 16 19 C -0.09 -3.81 5.91 31.12 0.18 -3.62 16 20 H 0.26 13.15 8.33 -92.71 -0.77 12.38 16 21 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 22 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 23 H 0.18 4.14 8.06 -2.91 -0.02 4.12 16 24 H 0.15 5.97 4.89 -2.91 -0.01 5.96 16 25 H 0.02 1.18 7.72 -2.39 -0.02 1.17 16 26 H 0.07 2.78 4.39 -2.39 -0.01 2.77 16 27 H 0.09 3.06 8.14 -2.38 -0.02 3.04 16 28 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.06 2.43 6.89 -2.39 -0.02 2.41 16 30 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.05 2.60 6.35 -2.39 -0.02 2.58 16 Total: -1.00 -56.44 250.50 4.23 -52.22 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 1.12 Total: 16.48 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 4.26 Total: -19.99 kcal Atomic # 7 Polarization: -88.93 SS G_CDS: -3.19 Total: -92.12 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.41 kcal Total: -56.44 4.23 -52.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261170929.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.255 kcal (2) G-P(sol) polarization free energy of solvation -56.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds