Wall clock time and date at job start Mon Mar 30 2020 02:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86799 * 119.99759 * 2 1 4 4 H 1.48504 * 109.46755 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47549 * 300.00240 * 3 2 1 6 6 H 1.48504 * 109.46889 * 60.00720 * 3 2 1 7 7 C 1.39946 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99836 * 205.74146 * 7 2 1 9 9 C 1.41013 * 120.00172 * 25.74190 * 7 2 1 10 10 C 1.41004 * 120.70965 * 23.49289 * 9 7 2 11 11 C 1.38008 * 118.28363 * 179.97438 * 10 9 7 12 12 C 1.38677 * 119.62858 * 0.02562 * 11 10 9 13 13 N 1.31971 * 121.44925 * 359.97102 * 12 11 10 14 14 C 1.32279 * 121.86223 * 359.74916 * 13 12 11 15 15 N 1.38081 * 119.90253 * 180.28998 * 14 13 12 16 16 C 1.48531 * 111.00157 * 292.47349 * 15 14 13 17 17 C 1.54940 * 103.23020 * 159.72123 * 16 15 14 18 18 C 1.54591 * 102.92179 * 322.58802 * 17 16 15 19 19 C 1.47895 * 111.00432 * 49.86985 * 15 14 13 20 20 H 0.97000 * 119.99679 * 186.47087 * 1 2 3 21 21 H 1.08003 * 120.85299 * 359.97438 * 10 9 7 22 22 H 1.08002 * 120.17896 * 180.02562 * 11 10 9 23 23 H 1.07993 * 119.27665 * 179.97438 * 12 11 10 24 24 H 1.09001 * 110.66640 * 278.15898 * 16 15 14 25 25 H 1.09005 * 110.66936 * 41.28806 * 16 15 14 26 26 H 1.09000 * 110.72513 * 204.22442 * 17 16 15 27 27 H 1.09005 * 110.71800 * 80.94490 * 17 16 15 28 28 H 1.08997 * 110.30954 * 263.03733 * 18 17 16 29 29 H 1.09003 * 110.31207 * 140.86889 * 18 17 16 30 30 H 1.09000 * 109.91822 * 333.50985 * 19 15 14 31 31 H 1.09002 * 109.91679 * 94.80062 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.7027 1.3464 -0.0006 5 1 1.8839 2.3965 -1.2124 6 1 1.8840 2.3964 1.2126 7 6 2.0084 -1.2120 -0.0005 8 1 3.0080 -1.2586 0.4056 9 6 1.4083 -2.3724 -0.5314 10 6 0.3685 -2.2762 -1.4790 11 6 -0.1825 -3.4440 -1.9659 12 6 0.2937 -4.6664 -1.5164 13 7 1.2677 -4.7417 -0.6290 14 6 1.8411 -3.6601 -0.1281 15 7 2.8612 -3.7861 0.7940 16 6 2.3564 -4.3481 2.0728 17 6 3.6375 -4.8983 2.7486 18 6 4.4415 -5.4646 1.5558 19 6 3.8929 -4.7324 0.3171 20 1 -0.4850 -0.8347 0.0947 21 1 0.0127 -1.3134 -1.8150 22 1 -0.9803 -3.4060 -2.6930 23 1 -0.1419 -5.5767 -1.9009 24 1 1.9039 -3.5673 2.6842 25 1 1.6447 -5.1522 1.8854 26 1 3.3906 -5.6886 3.4575 27 1 4.1891 -4.0966 3.2397 28 1 4.2770 -6.5382 1.4644 29 1 5.5035 -5.2531 1.6809 30 1 3.4482 -5.4504 -0.3719 31 1 4.6964 -4.1872 -0.1781 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261207476.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:03 Heat of formation + Delta-G solvation = 29.123774 kcal Electronic energy + Delta-G solvation = -14684.965269 eV Core-core repulsion = 12351.623540 eV Total energy + Delta-G solvation = -2333.341729 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.25289 -37.11662 -34.37095 -31.79973 -30.26231 -28.25367 -28.17874 -25.21021 -22.36182 -21.42640 -20.39362 -19.82023 -18.00246 -16.31807 -15.66116 -14.73325 -14.49928 -14.10961 -13.45551 -13.27308 -12.78521 -12.51249 -12.04868 -11.88904 -11.51388 -11.24168 -11.07995 -10.89454 -10.84528 -10.60654 -10.45149 -10.11129 -9.73681 -9.23502 -8.53296 -8.31630 -7.72942 -7.51918 -7.20444 -4.48729 2.53045 2.76522 3.12991 3.26658 3.33785 3.95312 4.51334 4.80284 5.17233 5.22586 5.44925 5.51013 5.90851 5.91588 6.01110 6.16173 6.17844 6.23547 6.42388 6.48089 6.56119 6.63329 6.67677 6.86876 6.93237 7.32949 7.55210 7.66050 7.69095 7.91282 8.03801 8.30355 8.73473 8.84297 9.49875 9.91232 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.025371 B = 0.011751 C = 0.008814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.378531 B = 2382.150761 C = 3175.895172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.033 3.967 3 Si 1.071 2.929 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.468 4.468 8 H 0.094 0.906 9 C 0.075 3.925 10 C -0.199 4.199 11 C -0.129 4.129 12 C -0.053 4.053 13 N -0.482 5.482 14 C 0.145 3.855 15 N -0.434 5.434 16 C 0.046 3.954 17 C -0.122 4.122 18 C -0.127 4.127 19 C 0.039 3.961 20 H 0.300 0.700 21 H 0.115 0.885 22 H 0.099 0.901 23 H 0.117 0.883 24 H 0.074 0.926 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.383 -3.121 2.229 5.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.190 4.190 3 Si 0.894 3.106 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.495 4.495 8 H 0.112 0.888 9 C 0.068 3.932 10 C -0.225 4.225 11 C -0.150 4.150 12 C -0.211 4.211 13 N -0.193 5.193 14 C -0.089 4.089 15 N -0.156 5.156 16 C -0.081 4.081 17 C -0.160 4.160 18 C -0.165 4.165 19 C -0.089 4.089 20 H 0.113 0.887 21 H 0.133 0.867 22 H 0.117 0.883 23 H 0.135 0.865 24 H 0.092 0.908 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.601 -1.774 2.488 5.523 hybrid contribution -0.673 -1.730 -0.511 1.925 sum 3.928 -3.504 1.977 5.623 Atomic orbital electron populations 1.70434 1.08367 1.34447 1.27903 1.27250 0.95641 1.04784 0.91284 0.83561 0.75778 0.73134 0.78100 1.19748 1.19970 1.20268 1.20641 1.03546 0.92790 1.32554 0.88843 1.18117 0.91467 0.92614 0.90997 1.21458 1.02583 0.97295 1.01179 1.21514 0.99416 0.94214 0.99815 1.21317 1.00652 0.95571 1.03530 1.66857 1.08373 1.34555 1.09475 1.19468 0.99500 0.88900 1.01073 1.62202 1.08679 1.42952 1.01770 1.23153 0.95850 0.97744 0.91385 1.22464 0.96721 0.99798 0.97015 1.22357 0.99511 0.99262 0.95358 1.22836 0.95193 0.94273 0.96615 0.88665 0.86689 0.88300 0.86549 0.90786 0.93704 0.91866 0.91126 0.92169 0.91783 0.92658 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.38 12.27 55.55 0.68 -19.69 16 2 C 0.03 0.81 4.98 -17.32 -0.09 0.73 16 3 Si 1.07 21.18 30.00 -169.99 -5.10 16.08 16 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.47 -12.23 8.65 -37.89 -0.33 -12.55 16 8 H 0.09 2.46 7.64 -52.49 -0.40 2.05 16 9 C 0.07 1.99 5.36 -106.47 -0.57 1.41 16 10 C -0.20 -5.08 8.05 -38.62 -0.31 -5.39 16 11 C -0.13 -3.01 10.08 -39.50 -0.40 -3.41 16 12 C -0.05 -1.24 11.17 -17.33 -0.19 -1.44 16 13 N -0.48 -11.98 8.73 -11.87 -0.10 -12.08 16 14 C 0.14 3.68 5.48 -155.02 -0.85 2.83 16 15 N -0.43 -9.83 4.44 -168.71 -0.75 -10.58 16 16 C 0.05 0.92 6.48 -1.90 -0.01 0.91 16 17 C -0.12 -1.92 7.06 -24.87 -0.18 -2.10 16 18 C -0.13 -1.98 6.93 -25.38 -0.18 -2.16 16 19 C 0.04 0.76 6.58 -2.76 -0.02 0.74 16 20 H 0.30 8.00 6.66 -40.82 -0.27 7.73 16 21 H 0.12 2.96 6.46 -52.48 -0.34 2.62 16 22 H 0.10 1.99 8.06 -52.49 -0.42 1.56 16 23 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 24 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 25 H 0.04 0.94 7.70 -51.93 -0.40 0.54 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 1.17 6.91 -51.93 -0.36 0.81 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 257.91 15.07 3.89 3.89 Total: -1.00 -27.77 257.91 -8.45 -36.22 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -3.95 Total: 6.59 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -3.12 Total: -20.43 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: -0.17 Total: -42.36 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.10 Total: 16.08 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.77 -8.45 -36.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261207476.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.347 kcal (2) G-P(sol) polarization free energy of solvation -27.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds