Wall clock time and date at job start Mon Mar 30 2020 02:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86799 * 119.99759 * 2 1 4 4 H 1.48504 * 109.46755 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47549 * 300.00240 * 3 2 1 6 6 H 1.48504 * 109.46889 * 60.00720 * 3 2 1 7 7 C 1.39946 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99836 * 205.74146 * 7 2 1 9 9 C 1.41013 * 120.00172 * 25.74190 * 7 2 1 10 10 C 1.41004 * 120.70965 * 23.49289 * 9 7 2 11 11 C 1.38008 * 118.28363 * 179.97438 * 10 9 7 12 12 C 1.38677 * 119.62858 * 0.02562 * 11 10 9 13 13 N 1.31971 * 121.44925 * 359.97102 * 12 11 10 14 14 C 1.32279 * 121.86223 * 359.74916 * 13 12 11 15 15 N 1.38081 * 119.90253 * 180.28998 * 14 13 12 16 16 C 1.48531 * 111.00157 * 292.47349 * 15 14 13 17 17 C 1.54940 * 103.23020 * 159.72123 * 16 15 14 18 18 C 1.54591 * 102.92179 * 322.58802 * 17 16 15 19 19 C 1.47895 * 111.00432 * 49.86985 * 15 14 13 20 20 H 0.97000 * 119.99679 * 186.47087 * 1 2 3 21 21 H 1.08003 * 120.85299 * 359.97438 * 10 9 7 22 22 H 1.08002 * 120.17896 * 180.02562 * 11 10 9 23 23 H 1.07993 * 119.27665 * 179.97438 * 12 11 10 24 24 H 1.09001 * 110.66640 * 278.15898 * 16 15 14 25 25 H 1.09005 * 110.66936 * 41.28806 * 16 15 14 26 26 H 1.09000 * 110.72513 * 204.22442 * 17 16 15 27 27 H 1.09005 * 110.71800 * 80.94490 * 17 16 15 28 28 H 1.08997 * 110.30954 * 263.03733 * 18 17 16 29 29 H 1.09003 * 110.31207 * 140.86889 * 18 17 16 30 30 H 1.09000 * 109.91822 * 333.50985 * 19 15 14 31 31 H 1.09002 * 109.91679 * 94.80062 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.7027 1.3464 -0.0006 5 1 1.8839 2.3965 -1.2124 6 1 1.8840 2.3964 1.2126 7 6 2.0084 -1.2120 -0.0005 8 1 3.0080 -1.2586 0.4056 9 6 1.4083 -2.3724 -0.5314 10 6 0.3685 -2.2762 -1.4790 11 6 -0.1825 -3.4440 -1.9659 12 6 0.2937 -4.6664 -1.5164 13 7 1.2677 -4.7417 -0.6290 14 6 1.8411 -3.6601 -0.1281 15 7 2.8612 -3.7861 0.7940 16 6 2.3564 -4.3481 2.0728 17 6 3.6375 -4.8983 2.7486 18 6 4.4415 -5.4646 1.5558 19 6 3.8929 -4.7324 0.3171 20 1 -0.4850 -0.8347 0.0947 21 1 0.0127 -1.3134 -1.8150 22 1 -0.9803 -3.4060 -2.6930 23 1 -0.1419 -5.5767 -1.9009 24 1 1.9039 -3.5673 2.6842 25 1 1.6447 -5.1522 1.8854 26 1 3.3906 -5.6886 3.4575 27 1 4.1891 -4.0966 3.2397 28 1 4.2770 -6.5382 1.4644 29 1 5.5035 -5.2531 1.6809 30 1 3.4482 -5.4504 -0.3719 31 1 4.6964 -4.1872 -0.1781 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261207476.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:03 Heat of formation + Delta-G solvation = 13.532373 kcal Electronic energy + Delta-G solvation = -14685.641362 eV Core-core repulsion = 12351.623540 eV Total energy + Delta-G solvation = -2334.017823 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.04275 -38.80096 -36.27996 -33.43719 -32.18957 -29.94665 -29.75282 -27.13404 -24.11292 -23.30791 -21.82709 -21.50519 -19.90938 -18.04452 -17.40380 -16.37050 -16.31881 -15.73655 -15.13415 -14.97329 -14.51416 -14.24615 -13.75321 -13.64932 -13.23035 -12.90738 -12.77494 -12.56695 -12.21865 -12.04559 -11.96948 -11.57418 -11.42099 -11.08570 -10.42436 -10.25217 -9.64578 -9.35391 -9.10157 -6.47707 0.62779 0.83767 1.51529 1.65625 1.82037 2.30238 2.63610 3.16610 3.42200 3.77393 3.96236 4.11533 4.18051 4.35183 4.42748 4.61295 4.63715 4.72933 4.89260 4.94509 4.97303 5.03120 5.08894 5.16728 5.34646 5.38690 5.64800 5.70681 5.96235 6.04681 6.07918 6.38832 6.78268 6.95118 7.56591 7.92981 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.025371 B = 0.011751 C = 0.008814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.378531 B = 2382.150761 C = 3175.895172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.002 3.998 3 Si 1.121 2.879 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.492 4.492 8 H 0.084 0.916 9 C 0.044 3.956 10 C -0.217 4.217 11 C -0.129 4.129 12 C -0.055 4.055 13 N -0.494 5.494 14 C 0.138 3.862 15 N -0.453 5.453 16 C 0.043 3.957 17 C -0.109 4.109 18 C -0.116 4.116 19 C 0.035 3.965 20 H 0.284 0.716 21 H 0.105 0.895 22 H 0.133 0.867 23 H 0.149 0.851 24 H 0.060 0.940 25 H 0.029 0.971 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.036 0.964 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.364 -3.625 2.637 6.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.215 4.215 3 Si 0.938 3.062 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.520 4.520 8 H 0.102 0.898 9 C 0.038 3.962 10 C -0.243 4.243 11 C -0.148 4.148 12 C -0.213 4.213 13 N -0.205 5.205 14 C -0.096 4.096 15 N -0.176 5.176 16 C -0.084 4.084 17 C -0.147 4.147 18 C -0.154 4.154 19 C -0.092 4.092 20 H 0.096 0.904 21 H 0.123 0.877 22 H 0.151 0.849 23 H 0.166 0.834 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.111 0.889 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.054 0.946 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.579 -2.307 2.900 6.698 hybrid contribution -1.029 -1.713 -0.682 2.112 sum 4.550 -4.020 2.218 6.464 Atomic orbital electron populations 1.70550 1.08974 1.33320 1.29875 1.28606 0.95616 1.07649 0.89652 0.82955 0.75018 0.69428 0.78818 1.18690 1.19031 1.18987 1.20694 1.03391 0.93794 1.34120 0.89826 1.18523 0.92355 0.93602 0.91742 1.21514 1.03197 0.97823 1.01744 1.21841 0.99752 0.93341 0.99915 1.21960 0.99837 0.96951 1.02513 1.66975 1.08997 1.34412 1.10096 1.19772 0.99915 0.88692 1.01261 1.62168 1.08644 1.44560 1.02205 1.23179 0.97835 0.96831 0.90601 1.22453 0.94192 1.00801 0.97260 1.22341 1.00735 0.99525 0.92817 1.22895 0.94286 0.93665 0.98371 0.90387 0.87652 0.84928 0.83356 0.92179 0.95238 0.88930 0.90167 0.90633 0.89128 0.94571 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.46 12.27 21.83 0.27 -42.19 16 2 C 0.00 0.10 4.98 85.25 0.42 0.52 16 3 Si 1.12 42.42 30.00 68.60 2.06 44.48 16 4 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 5 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 6 H -0.27 -9.47 7.11 99.48 0.71 -8.77 16 7 C -0.49 -26.43 8.65 23.36 0.20 -26.23 16 8 H 0.08 4.52 7.64 -2.91 -0.02 4.50 16 9 C 0.04 2.41 5.36 -21.06 -0.11 2.30 16 10 C -0.22 -11.26 8.05 22.89 0.18 -11.07 16 11 C -0.13 -5.89 10.08 22.32 0.22 -5.67 16 12 C -0.06 -2.53 11.17 84.78 0.95 -1.58 16 13 N -0.49 -24.50 8.73 -191.46 -1.67 -26.17 16 14 C 0.14 7.10 5.48 134.05 0.74 7.83 16 15 N -0.45 -20.65 4.44 -687.69 -3.06 -23.70 16 16 C 0.04 1.69 6.48 86.65 0.56 2.25 16 17 C -0.11 -3.15 7.06 31.80 0.22 -2.92 16 18 C -0.12 -3.30 6.93 31.47 0.22 -3.09 16 19 C 0.04 1.37 6.58 86.45 0.57 1.93 16 20 H 0.28 15.70 6.66 -92.71 -0.62 15.09 16 21 H 0.11 5.58 6.46 -2.91 -0.02 5.56 16 22 H 0.13 5.07 8.06 -2.91 -0.02 5.05 16 23 H 0.15 5.75 8.06 -2.91 -0.02 5.73 16 24 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 25 H 0.03 1.24 7.70 -2.38 -0.02 1.22 16 26 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 28 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.09 2.13 8.14 -2.39 -0.02 2.12 16 30 H 0.04 1.52 6.91 -2.39 -0.02 1.50 16 31 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -60.85 257.91 3.04 -57.81 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 1.26 Total: 25.49 kcal Atomic # 6 Polarization: -39.89 SS G_CDS: 4.18 Total: -35.72 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -4.46 Total: -92.06 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.06 Total: 44.48 kcal Total: -60.85 3.04 -57.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261207476.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.339 kcal (2) G-P(sol) polarization free energy of solvation -60.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds