Wall clock time and date at job start Mon Mar 30 2020 02:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46953 * 179.97438 * 10 9 7 12 12 C 1.38619 * 120.44980 * 124.99745 * 11 10 9 13 13 C 1.38574 * 118.39946 * 180.02562 * 12 11 10 14 14 C 1.50700 * 120.44397 * 179.97438 * 13 12 11 15 15 C 1.53004 * 117.50225 * 343.62823 * 14 13 12 16 16 C 1.52999 * 117.50026 * 275.00325 * 14 13 12 17 17 N 1.32343 * 119.10471 * 0.02562 * 13 12 11 18 18 C 1.31777 * 120.82504 * 359.97438 * 17 13 12 19 19 N 1.31813 * 121.75245 * 359.72163 * 18 17 13 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 22 22 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 23 23 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 24 24 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 25 25 H 1.07997 * 120.79729 * 359.97438 * 12 11 10 26 26 H 1.09001 * 115.54503 * 129.33565 * 14 13 12 27 27 H 1.08995 * 117.49788 * 359.97438 * 15 14 13 28 28 H 1.08996 * 117.49673 * 145.02117 * 15 14 13 29 29 H 1.09004 * 117.49963 * 214.98384 * 16 14 13 30 30 H 1.08995 * 117.50040 * 359.97438 * 16 14 13 31 31 H 1.07999 * 119.12645 * 179.97438 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4918 -4.9672 -0.0033 12 6 1.7338 -5.9177 -0.9828 13 6 1.0164 -7.1026 -0.9430 14 6 1.2422 -8.1673 -1.9853 15 6 1.9732 -7.7588 -3.2658 16 6 0.4703 -8.0435 -3.3005 17 7 0.1296 -7.2861 0.0221 18 6 -0.0741 -6.3598 0.9370 19 7 0.5937 -5.2233 0.9342 20 1 -0.4849 0.8400 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6247 -2.5562 -0.8920 23 1 2.8720 -3.6035 -0.8927 24 1 2.8719 -3.6051 0.8873 25 1 2.4633 -5.7386 -1.7588 26 1 1.4231 -9.1709 -1.6005 27 1 2.2904 -6.7198 -3.3546 28 1 2.6353 -8.4937 -3.7236 29 1 0.1436 -8.9657 -3.7811 30 1 -0.2012 -7.1921 -3.4117 31 1 -0.8048 -6.5381 1.7120 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261236798.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:07 Heat of formation + Delta-G solvation = 54.703355 kcal Electronic energy + Delta-G solvation = -13736.920061 eV Core-core repulsion = 11404.687546 eV Total energy + Delta-G solvation = -2332.232515 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.81270 -37.38007 -34.70958 -32.82901 -31.82752 -29.95259 -25.94538 -24.83372 -23.34771 -22.34506 -21.53335 -19.87635 -17.34494 -16.55404 -16.03817 -15.39862 -15.14946 -14.55982 -14.28002 -14.09562 -12.99390 -12.85406 -12.28493 -11.98518 -11.68593 -11.31173 -11.07055 -10.92130 -10.73271 -10.66761 -10.37958 -10.18148 -9.82619 -9.51120 -9.16744 -9.00570 -8.72639 -8.33921 -5.99598 -4.03219 1.23798 1.41934 3.33577 3.38131 3.40144 3.55939 4.00344 4.20307 4.44712 4.53370 4.64164 4.75313 4.96161 4.99952 5.28639 5.36088 5.47598 5.53581 5.63057 5.75680 5.89389 5.96646 6.07134 6.35838 6.46602 6.70189 6.95870 7.41596 7.65551 7.82499 8.00904 8.37763 8.49933 9.03378 9.60522 11.11569 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.042613 B = 0.005861 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.922211 B = 4775.943477 C = 5089.632173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.033 3.967 10 C -0.072 4.072 11 C 0.202 3.798 12 C -0.231 4.231 13 C 0.197 3.803 14 C -0.109 4.109 15 C -0.172 4.172 16 C -0.160 4.160 17 N -0.535 5.535 18 C 0.294 3.706 19 N -0.512 5.512 20 H 0.261 0.739 21 H 0.032 0.968 22 H 0.012 0.988 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.143 0.857 26 H 0.123 0.877 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.957 -14.827 -4.491 15.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.005 4.005 10 C -0.110 4.110 11 C 0.057 3.943 12 C -0.253 4.253 13 C 0.052 3.948 14 C -0.128 4.128 15 C -0.209 4.209 16 C -0.197 4.197 17 N -0.250 5.250 18 C 0.006 3.994 19 N -0.227 5.227 20 H 0.071 0.929 21 H 0.050 0.950 22 H 0.031 0.969 23 H 0.089 0.911 24 H 0.096 0.904 25 H 0.161 0.839 26 H 0.141 0.859 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 2.136 -14.863 -3.762 15.479 hybrid contribution 0.903 1.061 -0.574 1.507 sum 3.039 -13.801 -4.335 14.782 Atomic orbital electron populations 1.69968 1.06094 1.26760 1.50371 1.25013 0.94830 0.99245 0.95221 0.86637 0.79555 0.83063 0.78613 1.20241 1.21280 1.20178 1.21176 0.92980 0.90884 1.51251 0.92566 1.19025 0.93488 0.89854 0.98089 1.20922 0.98445 0.89545 1.02058 1.22358 0.89429 0.95453 0.87093 1.22628 1.04134 0.95721 1.02796 1.20634 0.89741 0.92349 0.92109 1.20752 1.06756 0.98044 0.87276 1.23113 0.95160 1.03334 0.99285 1.22966 0.94791 1.03766 0.98213 1.68060 1.18387 1.34109 1.04443 1.24939 0.95303 0.84620 0.94512 1.68338 1.07508 1.20855 1.25950 0.92892 0.94982 0.96923 0.91127 0.90361 0.83930 0.85936 0.87930 0.87927 0.88062 0.88535 0.79120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.16 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.87 4.84 -27.88 -0.14 0.73 16 10 C -0.07 -1.49 5.58 -27.88 -0.16 -1.65 16 11 C 0.20 3.88 6.20 -82.23 -0.51 3.37 16 12 C -0.23 -3.73 9.07 -39.32 -0.36 -4.08 16 13 C 0.20 3.01 6.50 -82.25 -0.53 2.48 16 14 C -0.11 -1.27 6.25 -91.77 -0.57 -1.84 16 15 C -0.17 -1.62 9.83 -26.73 -0.26 -1.89 16 16 C -0.16 -1.62 10.23 -26.73 -0.27 -1.89 16 17 N -0.53 -8.80 10.38 -10.80 -0.11 -8.91 16 18 C 0.29 4.95 12.29 -92.15 -1.13 3.82 16 19 N -0.51 -10.11 10.05 -10.79 -0.11 -10.22 16 20 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 21 H 0.03 0.92 7.99 -51.93 -0.41 0.50 16 22 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.07 1.33 7.94 -51.93 -0.41 0.92 16 24 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 25 H 0.14 1.94 6.35 -52.49 -0.33 1.61 16 26 H 0.12 1.28 8.14 -51.93 -0.42 0.85 16 27 H 0.10 1.01 6.47 -51.93 -0.34 0.67 16 28 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.19 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 271.63 15.07 4.09 4.09 Total: -1.00 -31.94 271.63 -8.75 -40.69 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -4.00 Total: -1.33 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -4.34 Total: -14.48 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.52 Total: -45.56 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.94 -8.75 -40.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261236798.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.397 kcal (2) G-P(sol) polarization free energy of solvation -31.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds