Wall clock time and date at job start Mon Mar 30 2020 02:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46953 * 179.97438 * 10 9 7 12 12 C 1.38619 * 120.44980 * 124.99745 * 11 10 9 13 13 C 1.38574 * 118.39946 * 180.02562 * 12 11 10 14 14 C 1.50700 * 120.44397 * 179.97438 * 13 12 11 15 15 C 1.53004 * 117.50225 * 343.62823 * 14 13 12 16 16 C 1.52999 * 117.50026 * 275.00325 * 14 13 12 17 17 N 1.32343 * 119.10471 * 0.02562 * 13 12 11 18 18 C 1.31777 * 120.82504 * 359.97438 * 17 13 12 19 19 N 1.31813 * 121.75245 * 359.72163 * 18 17 13 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 22 22 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 23 23 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 24 24 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 25 25 H 1.07997 * 120.79729 * 359.97438 * 12 11 10 26 26 H 1.09001 * 115.54503 * 129.33565 * 14 13 12 27 27 H 1.08995 * 117.49788 * 359.97438 * 15 14 13 28 28 H 1.08996 * 117.49673 * 145.02117 * 15 14 13 29 29 H 1.09004 * 117.49963 * 214.98384 * 16 14 13 30 30 H 1.08995 * 117.50040 * 359.97438 * 16 14 13 31 31 H 1.07999 * 119.12645 * 179.97438 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4918 -4.9672 -0.0033 12 6 1.7338 -5.9177 -0.9828 13 6 1.0164 -7.1026 -0.9430 14 6 1.2422 -8.1673 -1.9853 15 6 1.9732 -7.7588 -3.2658 16 6 0.4703 -8.0435 -3.3005 17 7 0.1296 -7.2861 0.0221 18 6 -0.0741 -6.3598 0.9370 19 7 0.5937 -5.2233 0.9342 20 1 -0.4849 0.8400 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6247 -2.5562 -0.8920 23 1 2.8720 -3.6035 -0.8927 24 1 2.8719 -3.6051 0.8873 25 1 2.4633 -5.7386 -1.7588 26 1 1.4231 -9.1709 -1.6005 27 1 2.2904 -6.7198 -3.3546 28 1 2.6353 -8.4937 -3.7236 29 1 0.1436 -8.9657 -3.7811 30 1 -0.2012 -7.1921 -3.4117 31 1 -0.8048 -6.5381 1.7120 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261236798.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:06 Heat of formation + Delta-G solvation = 36.278557 kcal Electronic energy + Delta-G solvation = -13737.719020 eV Core-core repulsion = 11404.687546 eV Total energy + Delta-G solvation = -2333.031474 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.10859 -38.30999 -36.39713 -34.69183 -33.23854 -31.69293 -27.74954 -26.12482 -24.81477 -23.19988 -23.11751 -21.22919 -18.70625 -18.45472 -17.43403 -16.55683 -16.43832 -16.34969 -15.60778 -15.21688 -14.73048 -14.60182 -14.06038 -13.21165 -13.06028 -12.84497 -12.55347 -12.43860 -12.27906 -11.88524 -11.85197 -11.63373 -11.36940 -11.31336 -10.90182 -10.55833 -10.34416 -10.11831 -8.19664 -6.32387 -0.04107 0.06585 1.41600 1.45408 1.53153 2.41450 2.62598 2.82254 3.11209 3.13866 3.20305 3.49688 3.88935 4.00611 4.04927 4.12904 4.25482 4.46749 4.63269 4.65677 4.78583 4.81045 5.00683 5.05255 5.14457 5.24093 5.44242 5.49045 5.64998 5.82519 6.11392 6.19100 6.84535 7.16963 7.37353 8.92444 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.042613 B = 0.005861 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.922211 B = 4775.943477 C = 5089.632173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.970 3.030 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.069 0.931 9 C 0.042 3.958 10 C -0.059 4.059 11 C 0.175 3.825 12 C -0.227 4.227 13 C 0.197 3.803 14 C -0.126 4.126 15 C -0.155 4.155 16 C -0.158 4.158 17 N -0.539 5.539 18 C 0.288 3.712 19 N -0.550 5.550 20 H 0.263 0.737 21 H -0.005 1.005 22 H -0.019 1.019 23 H 0.092 0.908 24 H 0.079 0.921 25 H 0.169 0.831 26 H 0.138 0.862 27 H 0.098 0.902 28 H 0.131 0.869 29 H 0.125 0.875 30 H 0.078 0.922 31 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.532 -15.747 -5.684 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.088 0.912 9 C 0.005 3.995 10 C -0.097 4.097 11 C 0.031 3.969 12 C -0.248 4.248 13 C 0.052 3.948 14 C -0.145 4.145 15 C -0.192 4.192 16 C -0.196 4.196 17 N -0.254 5.254 18 C 0.000 4.000 19 N -0.265 5.265 20 H 0.072 0.928 21 H 0.013 0.987 22 H 0.000 1.000 23 H 0.110 0.890 24 H 0.097 0.903 25 H 0.186 0.814 26 H 0.156 0.844 27 H 0.116 0.884 28 H 0.149 0.851 29 H 0.144 0.856 30 H 0.097 0.903 31 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.728 -15.795 -4.956 16.968 hybrid contribution 0.352 1.256 -0.219 1.323 sum 4.080 -14.539 -5.174 15.962 Atomic orbital electron populations 1.70128 1.08107 1.27878 1.51515 1.26044 0.95712 1.03631 0.94561 0.85431 0.78163 0.77647 0.79378 1.18703 1.21111 1.19063 1.21664 0.93835 0.91840 1.50857 0.91241 1.18789 0.93831 0.92154 0.94756 1.20659 0.97339 0.88541 1.03136 1.22205 0.90317 0.95724 0.88681 1.22829 1.04483 0.95255 1.02234 1.21290 0.88427 0.92925 0.92206 1.20884 1.09036 0.97557 0.87027 1.23252 0.95036 1.03904 0.97025 1.23053 0.95257 1.04270 0.96971 1.68184 1.18685 1.33815 1.04732 1.25472 0.95328 0.83899 0.95275 1.68272 1.08660 1.22484 1.27129 0.92812 0.98679 1.00016 0.88988 0.90299 0.81386 0.84410 0.88374 0.85087 0.85642 0.90320 0.76488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.45 13.29 21.45 0.28 -58.17 16 2 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 3 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.54 -31.09 9.11 25.60 0.23 -30.85 16 8 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 9 C 0.04 2.32 4.84 29.85 0.14 2.46 16 10 C -0.06 -2.48 5.58 29.85 0.17 -2.31 16 11 C 0.18 6.80 6.20 42.58 0.26 7.07 16 12 C -0.23 -7.08 9.07 22.44 0.20 -6.88 16 13 C 0.20 5.77 6.50 42.56 0.28 6.04 16 14 C -0.13 -2.59 6.25 -11.54 -0.07 -2.67 16 15 C -0.16 -2.40 9.83 30.60 0.30 -2.10 16 16 C -0.16 -2.78 10.23 30.60 0.31 -2.47 16 17 N -0.54 -17.31 10.38 -188.09 -1.95 -19.26 16 18 C 0.29 9.71 12.29 180.88 2.22 11.94 16 19 N -0.55 -22.29 10.05 -188.06 -1.89 -24.18 16 20 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 21 H -0.01 -0.32 7.99 -2.39 -0.02 -0.34 16 22 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 23 H 0.09 3.40 7.94 -2.39 -0.02 3.38 16 24 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 25 H 0.17 4.22 6.35 -2.91 -0.02 4.20 16 26 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.10 1.63 6.47 -2.39 -0.02 1.62 16 28 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.13 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.22 5.72 8.06 -2.91 -0.02 5.69 16 Total: -1.00 -70.54 271.63 4.10 -66.44 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 1.12 Total: 8.29 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 4.51 Total: -19.42 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -3.56 Total: -101.61 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -70.54 4.10 -66.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261236798.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.718 kcal (2) G-P(sol) polarization free energy of solvation -70.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds