Wall clock time and date at job start Mon Mar 30 2020 02:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 110.81370 * 2 1 4 4 C 1.54709 * 110.74999 * 236.67533 * 2 1 3 5 5 C 1.51635 * 101.94342 * 216.45388 * 4 2 1 6 6 C 1.37747 * 132.17168 * 195.60799 * 5 4 2 7 7 C 1.38345 * 119.98038 * 178.85301 * 6 5 4 8 8 C 1.38289 * 119.76537 * 0.52853 * 7 6 5 9 9 C 1.50700 * 119.82013 * 179.91449 * 8 7 6 10 10 C 1.50702 * 109.46869 * 269.72128 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 C 1.37931 * 120.35522 * 359.63528 * 8 7 6 19 19 C 1.38893 * 107.04953 * 15.14260 * 5 4 2 20 20 O 1.36139 * 111.21122 * 1.43344 * 19 5 4 21 21 H 1.08992 * 109.47331 * 183.32223 * 1 2 3 22 22 H 1.09008 * 109.46805 * 303.32460 * 1 2 3 23 23 H 1.09004 * 109.46934 * 63.32199 * 1 2 3 24 24 H 1.09000 * 110.93463 * 98.28847 * 4 2 1 25 25 H 1.09003 * 110.93405 * 334.61653 * 4 2 1 26 26 H 1.07995 * 120.00580 * 359.10643 * 6 5 4 27 27 H 1.08003 * 120.11770 * 180.24618 * 7 6 5 28 28 H 1.09004 * 109.47210 * 149.72421 * 9 8 7 29 29 H 1.08994 * 109.47551 * 29.72073 * 9 8 7 30 30 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 31 31 H 1.07998 * 119.88348 * 180.28211 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9173 1.0188 0.0000 4 6 2.0782 -0.7948 -1.2088 5 6 3.3052 -1.4603 -0.6165 6 6 4.3939 -2.0748 -1.1949 7 6 5.4022 -2.5876 -0.3985 8 6 5.3068 -2.4901 0.9777 9 6 6.4035 -3.0499 1.8465 10 6 6.0938 -4.4857 2.1837 11 1 5.1930 -4.9468 1.8062 12 6 6.9634 -5.2126 2.9689 13 7 8.0604 -4.6511 3.4282 14 14 6.5832 -6.9945 3.3805 15 1 7.1731 -7.8788 2.3435 16 1 7.1627 -7.3309 4.7057 17 1 5.1117 -7.1905 3.4194 18 6 4.2159 -1.8782 1.5592 19 6 3.1972 -1.3582 0.7644 20 8 2.0393 -0.7387 1.1235 21 1 -0.3633 -1.0258 0.0595 22 1 -0.3633 0.5646 0.8588 23 1 -0.3633 0.4614 -0.9183 24 1 2.3534 -0.1246 -2.0232 25 1 1.3560 -1.5386 -1.5457 26 1 4.4622 -2.1527 -2.2699 27 1 6.2588 -3.0663 -0.8497 28 1 6.4722 -2.4676 2.7654 29 1 7.3522 -2.9988 1.3122 30 1 8.6721 -5.1624 3.9809 31 1 4.1514 -1.8023 2.6345 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261255087.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:17 Heat of formation + Delta-G solvation = -24.422397 kcal Electronic energy + Delta-G solvation = -13991.654804 eV Core-core repulsion = 11623.698388 eV Total energy + Delta-G solvation = -2367.956416 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.71020 -37.29072 -33.41267 -32.78867 -31.25466 -29.45885 -28.21846 -25.49166 -22.79370 -22.08438 -21.41623 -20.09300 -16.78828 -16.33202 -16.12831 -15.61227 -14.72835 -14.31191 -13.76506 -13.34486 -12.95529 -12.81169 -12.55802 -12.22059 -12.16079 -11.80499 -11.35832 -11.20515 -11.00233 -10.75304 -10.58199 -10.38630 -10.23421 -9.56010 -9.39521 -8.42259 -8.02488 -7.49458 -6.04289 -4.08029 1.97847 2.01334 3.31442 3.37551 3.42439 3.54563 4.30260 4.49274 4.65995 4.70498 4.98641 5.19065 5.30495 5.37429 5.42934 5.60274 5.64740 5.80215 5.97584 5.99861 6.11234 6.18285 6.30399 6.66724 6.93766 7.01497 7.14834 7.25441 7.51590 7.78085 7.84327 7.91722 8.30831 8.96944 9.55746 11.05707 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.047300 B = 0.006366 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.828807 B = 4397.561402 C = 4564.363140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.075 3.925 3 H 0.080 0.920 4 C -0.098 4.098 5 C -0.209 4.209 6 C -0.074 4.074 7 C -0.151 4.151 8 C 0.000 4.000 9 C 0.048 3.952 10 C -0.512 4.512 11 H 0.058 0.942 12 C 0.059 3.941 13 N -0.894 5.894 14 Si 0.896 3.104 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.139 4.139 19 C 0.098 3.902 20 O -0.308 6.308 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.113 0.887 27 H 0.124 0.876 28 H 0.031 0.969 29 H 0.033 0.967 30 H 0.262 0.738 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.922 8.189 -8.587 16.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.019 3.981 3 H 0.098 0.902 4 C -0.135 4.135 5 C -0.209 4.209 6 C -0.092 4.092 7 C -0.169 4.169 8 C 0.000 4.000 9 C 0.011 3.989 10 C -0.550 4.550 11 H 0.076 0.924 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.724 3.276 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.158 4.158 19 C 0.054 3.946 20 O -0.223 6.223 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.093 0.907 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.132 0.868 27 H 0.142 0.858 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.897 8.164 -8.265 15.928 hybrid contribution -0.130 -0.999 0.106 1.013 sum -11.027 7.165 -8.159 15.476 Atomic orbital electron populations 1.21859 0.92667 1.03332 1.02612 1.23283 0.95238 0.95360 0.84239 0.90169 1.21718 0.95182 0.98768 0.97857 1.20497 0.98285 1.08285 0.93866 1.20185 0.92577 0.97398 0.99019 1.20997 0.99650 1.02708 0.93515 1.20434 0.95090 0.90170 0.94290 1.18393 0.90956 0.95757 0.93804 1.21047 1.07101 0.95518 1.31353 0.92395 1.25003 0.94979 0.98531 0.95762 1.69959 1.11522 1.36803 1.35022 0.86519 0.78652 0.84735 0.77723 1.20561 1.21131 1.19784 1.20239 0.92199 1.03692 0.99665 1.19548 0.86722 0.95405 0.92943 1.86812 1.35178 1.62906 1.37367 0.91491 0.91581 0.90694 0.90012 0.89959 0.86847 0.85790 0.95079 0.94919 0.92811 0.85878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.58 37.16 0.36 -1.07 16 2 C 0.08 0.96 4.26 -25.83 -0.11 0.85 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.10 -1.26 6.65 -26.52 -0.18 -1.44 16 5 C -0.21 -3.59 6.27 -104.10 -0.65 -4.24 16 6 C -0.07 -1.27 10.03 -39.72 -0.40 -1.67 16 7 C -0.15 -2.99 9.71 -39.52 -0.38 -3.38 16 8 C 0.00 0.01 5.06 -104.72 -0.53 -0.52 16 9 C 0.05 1.24 5.09 -29.03 -0.15 1.09 16 10 C -0.51 -14.50 9.09 -34.44 -0.31 -14.82 16 11 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 14 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 C -0.14 -2.98 9.70 -39.31 -0.38 -3.36 16 19 C 0.10 1.90 7.03 -38.95 -0.27 1.62 16 20 O -0.31 -5.40 10.81 -20.18 -0.22 -5.62 16 21 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.08 0.98 7.92 -51.93 -0.41 0.57 16 26 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 27 H 0.12 2.34 8.06 -52.48 -0.42 1.92 16 28 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 29 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 LS Contribution 267.92 15.07 4.04 4.04 Total: -1.00 -30.63 267.92 -7.75 -38.38 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -4.17 Total: -2.38 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: -3.11 Total: -25.35 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.74 Total: -25.76 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.22 Total: -5.62 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.63 -7.75 -38.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261255087.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.956 kcal (2) G-P(sol) polarization free energy of solvation -30.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds