Wall clock time and date at job start Mon Mar 30 2020 02:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.81140 * 2 1 4 4 C 1.54710 * 110.74931 * 236.68161 * 2 1 3 5 5 C 1.51638 * 101.93418 * 216.42954 * 4 2 1 6 6 C 1.37745 * 132.17371 * 195.50198 * 5 4 2 7 7 C 1.38353 * 119.97998 * 179.41214 * 6 5 4 8 8 C 1.38285 * 119.76810 * 359.93773 * 7 6 5 9 9 C 1.37935 * 120.34819 * 0.19566 * 8 7 6 10 10 C 1.50696 * 119.87795 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.47259 * 265.00114 * 10 9 8 12 12 H 1.08005 * 119.99758 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00102 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47057 * 179.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 300.00068 * 15 13 11 18 18 H 1.48504 * 109.47102 * 60.00417 * 15 13 11 19 19 C 1.38888 * 107.04999 * 15.50173 * 5 4 2 20 20 O 1.36134 * 111.22748 * 0.83583 * 19 5 4 21 21 H 1.08994 * 109.47230 * 183.32083 * 1 2 3 22 22 H 1.09006 * 109.46966 * 303.31884 * 1 2 3 23 23 H 1.08991 * 109.47056 * 63.31449 * 1 2 3 24 24 H 1.08992 * 110.93336 * 98.26525 * 4 2 1 25 25 H 1.09000 * 110.93208 * 334.58822 * 4 2 1 26 26 H 1.08002 * 120.01077 * 359.39085 * 6 5 4 27 27 H 1.07997 * 120.11157 * 179.97438 * 7 6 5 28 28 H 1.08002 * 119.82574 * 180.18609 * 8 7 6 29 29 H 1.09001 * 109.47545 * 145.00454 * 10 9 8 30 30 H 1.09006 * 109.47511 * 25.00119 * 10 9 8 31 31 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 6 2.0781 -0.7947 -1.2090 5 6 3.3055 -1.4597 -0.6167 6 6 4.3935 -2.0755 -1.1950 7 6 5.3968 -2.5976 -0.3981 8 6 5.3029 -2.4972 0.9779 9 6 4.2130 -1.8833 1.5592 10 6 4.1219 -1.7793 3.0598 11 6 3.3070 -2.9288 3.5945 12 1 2.8966 -3.6617 2.9155 13 6 3.0855 -3.0449 4.9503 14 7 3.5848 -2.1523 5.7770 15 14 2.0749 -4.4694 5.6129 16 1 1.9851 -4.3669 7.0917 17 1 0.7102 -4.4219 5.0292 18 1 2.7264 -5.7520 5.2448 19 6 3.1936 -1.3647 0.7644 20 8 2.0394 -0.7386 1.1235 21 1 -0.3633 -1.0259 0.0595 22 1 -0.3633 0.5645 0.8588 23 1 -0.3633 0.4615 -0.9181 24 1 2.3530 -0.1244 -2.0233 25 1 1.3562 -1.5387 -1.5455 26 1 4.4631 -2.1512 -2.2701 27 1 6.2505 -3.0812 -0.8493 28 1 6.0871 -2.9018 1.6007 29 1 3.6434 -0.8381 3.3304 30 1 5.1237 -1.8140 3.4880 31 1 4.1093 -1.4124 5.4329 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261258816.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:20 Heat of formation + Delta-G solvation = -45.978117 kcal Electronic energy + Delta-G solvation = -14390.206489 eV Core-core repulsion = 12021.315346 eV Total energy + Delta-G solvation = -2368.891142 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.05514 -38.60721 -35.94866 -34.09913 -32.43428 -31.61347 -28.44463 -27.42693 -25.24389 -23.07744 -22.55726 -21.68479 -19.01065 -18.38052 -17.59070 -16.64039 -16.19770 -15.68834 -15.48574 -14.86883 -14.35819 -14.20085 -13.99494 -13.66332 -13.49391 -13.17689 -13.09912 -12.84311 -12.61756 -12.31563 -12.04164 -11.95097 -11.67392 -11.42851 -11.01460 -10.61396 -9.55775 -9.01020 -8.67681 -6.43915 0.39415 0.52057 1.46704 1.56470 1.76591 2.42808 2.51743 2.82487 3.09852 3.49589 3.62286 3.95467 4.05793 4.17810 4.25525 4.39883 4.48817 4.64528 4.67616 4.73266 4.88739 4.89725 4.98519 5.03746 5.19765 5.25040 5.48791 5.52970 5.73911 5.88025 5.90138 6.09458 6.36756 6.51994 7.35778 8.65288 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.026628 B = 0.009683 C = 0.007946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.279577 B = 2891.030256 C = 3523.060132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.056 3.944 3 H 0.088 0.912 4 C -0.089 4.089 5 C -0.183 4.183 6 C -0.085 4.085 7 C -0.140 4.140 8 C -0.108 4.108 9 C -0.099 4.099 10 C 0.051 3.949 11 C -0.598 4.598 12 H 0.038 0.962 13 C -0.037 4.037 14 N -0.933 5.933 15 Si 1.119 2.881 16 H -0.276 1.276 17 H -0.273 1.273 18 H -0.265 1.265 19 C 0.074 3.926 20 O -0.333 6.333 21 H 0.056 0.944 22 H 0.059 0.941 23 H 0.114 0.886 24 H 0.122 0.878 25 H 0.100 0.900 26 H 0.163 0.837 27 H 0.161 0.839 28 H 0.122 0.878 29 H -0.015 1.015 30 H 0.000 1.000 31 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.469 2.057 -17.307 17.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.000 4.000 3 H 0.106 0.894 4 C -0.126 4.126 5 C -0.184 4.184 6 C -0.103 4.103 7 C -0.157 4.157 8 C -0.126 4.126 9 C -0.100 4.100 10 C 0.014 3.986 11 C -0.635 4.635 12 H 0.057 0.943 13 C -0.234 4.234 14 N -0.571 5.571 15 Si 0.939 3.061 16 H -0.201 1.201 17 H -0.199 1.199 18 H -0.190 1.190 19 C 0.029 3.971 20 O -0.249 6.249 21 H 0.075 0.925 22 H 0.078 0.922 23 H 0.133 0.867 24 H 0.140 0.860 25 H 0.119 0.881 26 H 0.180 0.820 27 H 0.178 0.822 28 H 0.140 0.860 29 H 0.003 0.997 30 H 0.019 0.981 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.187 1.413 -15.726 16.107 hybrid contribution 0.825 1.006 -0.741 1.497 sum -2.362 2.419 -16.466 16.810 Atomic orbital electron populations 1.21882 0.90538 1.03128 1.04305 1.23778 0.97242 0.95507 0.83444 0.89418 1.21869 0.93294 0.99378 0.98036 1.21244 0.99412 1.05387 0.92349 1.20617 0.91587 0.96817 1.01234 1.21341 1.00740 1.01722 0.91937 1.20926 0.96705 0.98616 0.96377 1.19649 0.93434 1.01062 0.95842 1.18074 0.95275 0.95629 0.89577 1.22156 1.35703 1.10953 0.94730 0.94317 1.27523 0.98110 1.03689 0.94104 1.70912 1.34449 1.13823 1.37884 0.82938 0.75061 0.72285 0.75814 1.20126 1.19885 1.19006 1.19634 0.87071 0.96580 0.93787 1.86928 1.35266 1.62899 1.39773 0.92458 0.92227 0.86715 0.86010 0.88143 0.81978 0.82180 0.85962 0.99683 0.98134 0.93734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.58 71.98 0.69 -2.60 16 2 C 0.06 1.65 4.26 31.18 0.13 1.79 16 3 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 4 C -0.09 -2.20 6.65 30.73 0.20 -2.00 16 5 C -0.18 -6.17 6.27 -19.53 -0.12 -6.29 16 6 C -0.08 -2.41 10.03 22.18 0.22 -2.19 16 7 C -0.14 -4.30 10.07 22.31 0.22 -4.07 16 8 C -0.11 -4.41 9.64 22.21 0.21 -4.20 16 9 C -0.10 -4.90 5.09 -19.69 -0.10 -5.00 16 10 C 0.05 3.03 4.37 29.10 0.13 3.16 16 11 C -0.60 -37.54 9.09 25.60 0.23 -37.31 16 12 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 13 C -0.04 -2.32 5.46 84.65 0.46 -1.85 16 14 N -0.93 -61.18 13.65 21.45 0.29 -60.88 16 15 Si 1.12 53.52 29.90 68.60 2.05 55.57 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 19 C 0.07 3.33 6.75 22.68 0.15 3.48 16 20 O -0.33 -15.07 10.75 -95.08 -1.02 -16.09 16 21 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 23 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.10 2.21 7.92 -2.39 -0.02 2.19 16 26 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 27 H 0.16 3.57 8.06 -2.91 -0.02 3.54 16 28 H 0.12 4.84 8.06 -2.91 -0.02 4.81 16 29 H -0.02 -0.97 7.98 -2.39 -0.02 -0.98 16 30 H 0.00 0.03 7.92 -2.38 -0.02 0.01 16 31 H 0.25 16.91 7.22 -92.71 -0.67 16.24 16 Total: -1.00 -78.00 266.57 4.97 -73.04 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 1.20 Total: 5.46 kcal Atomic # 6 Polarization: -59.53 SS G_CDS: 2.44 Total: -57.09 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: 0.29 Total: -60.88 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -1.02 Total: -16.09 kcal Atomic # 14 Polarization: 53.52 SS G_CDS: 2.05 Total: 55.57 kcal Total: -78.00 4.97 -73.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258816.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.057 kcal (2) G-P(sol) polarization free energy of solvation -78.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds