Wall clock time and date at job start Mon Mar 30 2020 02:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 110.66564 * 2 1 4 4 C 1.54706 * 110.74303 * 123.20791 * 2 1 3 5 5 C 1.51646 * 101.92112 * 93.02035 * 4 2 1 6 6 C 1.37739 * 132.18245 * 195.77785 * 5 4 2 7 7 C 1.38349 * 119.98159 * 179.44957 * 6 5 4 8 8 C 1.38284 * 119.76739 * 359.90616 * 7 6 5 9 9 C 1.37932 * 120.34925 * 0.43210 * 8 7 6 10 10 C 1.50700 * 119.87509 * 179.76652 * 9 8 7 11 11 C 1.50703 * 109.47098 * 264.99705 * 10 9 8 12 12 H 1.08003 * 119.99773 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99942 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00176 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99955 * 180.02562 * 13 11 10 16 16 H 1.48509 * 109.46911 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47170 * 119.99502 * 15 13 11 18 18 H 1.48491 * 109.46921 * 239.99522 * 15 13 11 19 19 C 1.38891 * 107.03352 * 15.46902 * 5 4 2 20 20 O 1.36129 * 111.23862 * 0.94347 * 19 5 4 21 21 H 1.08999 * 109.47268 * 296.79078 * 1 2 3 22 22 H 1.09005 * 109.46453 * 56.78879 * 1 2 3 23 23 H 1.08997 * 109.47213 * 176.78784 * 1 2 3 24 24 H 1.08997 * 110.94881 * 334.86562 * 4 2 1 25 25 H 1.08998 * 110.93931 * 211.17403 * 4 2 1 26 26 H 1.08001 * 120.00491 * 359.47088 * 6 5 4 27 27 H 1.08002 * 120.11105 * 179.97438 * 7 6 5 28 28 H 1.08002 * 119.82129 * 180.14799 * 8 7 6 29 29 H 1.08997 * 109.47585 * 24.99636 * 10 9 8 30 30 H 1.09006 * 109.46856 * 144.99886 * 10 9 8 31 31 H 0.97002 * 120.00331 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 6 2.0780 -0.7924 1.2105 5 6 2.2621 -2.1774 0.6209 6 6 2.4455 -3.4128 1.2016 7 6 2.5779 -4.5375 0.4068 8 6 2.5232 -4.4158 -0.9696 9 6 2.3466 -3.1786 -1.5534 10 6 2.2939 -3.0576 -3.0546 11 6 3.6635 -2.7107 -3.5790 12 1 4.4893 -2.5895 -2.8936 13 6 3.8619 -2.5469 -4.9335 14 7 2.8562 -2.6940 -5.7680 15 14 5.5598 -2.1176 -5.5836 16 1 6.5115 -2.0095 -4.4487 17 1 6.0170 -3.1808 -6.5140 18 1 5.5003 -0.8209 -6.3046 19 6 2.2117 -2.0415 -0.7604 20 8 2.0394 -0.7405 -1.1220 21 1 -0.3634 0.4632 0.9173 22 1 -0.3632 0.5629 -0.8599 23 1 -0.3633 -1.0260 -0.0576 24 1 1.3542 -0.8090 2.0253 25 1 3.0305 -0.3820 1.5458 26 1 2.4857 -3.5036 2.2770 27 1 2.7222 -5.5072 0.8598 28 1 2.6240 -5.2935 -1.5909 29 1 1.9697 -4.0053 -3.4844 30 1 1.5894 -2.2732 -3.3314 31 1 2.9959 -2.5792 -6.7210 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261258819.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:22 Heat of formation + Delta-G solvation = -40.945609 kcal Electronic energy + Delta-G solvation = -14424.854829 eV Core-core repulsion = 12056.181912 eV Total energy + Delta-G solvation = -2368.672917 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.03165 -38.49301 -35.60049 -34.02009 -32.36359 -31.40501 -28.79007 -27.59590 -25.26180 -23.06762 -22.44341 -21.43874 -18.57761 -17.93830 -17.38646 -16.71352 -16.65143 -16.07610 -14.84117 -14.64509 -14.47134 -14.39221 -13.85632 -13.42786 -13.30294 -13.21756 -12.97307 -12.75708 -12.70532 -12.35258 -12.17534 -11.89210 -11.71210 -11.50657 -11.19545 -10.63240 -9.46880 -8.88357 -8.20820 -6.34720 0.49412 0.61809 1.34879 1.36382 1.50035 2.37489 2.55146 2.93014 3.08105 3.55691 3.74350 4.03533 4.12294 4.29243 4.29593 4.47589 4.58480 4.71914 4.73285 4.87822 4.95653 4.99526 5.16322 5.23876 5.24320 5.38768 5.57917 5.61628 5.73304 5.86909 6.01287 6.14590 6.49833 6.76098 7.32719 8.88286 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.029929 B = 0.009189 C = 0.008048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.329695 B = 3046.543492 C = 3478.312131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.056 3.944 3 H 0.130 0.870 4 C -0.090 4.090 5 C -0.182 4.182 6 C -0.088 4.088 7 C -0.142 4.142 8 C -0.108 4.108 9 C -0.101 4.101 10 C 0.067 3.933 11 C -0.523 4.523 12 H 0.047 0.953 13 C 0.002 3.998 14 N -0.931 5.931 15 Si 0.968 3.032 16 H -0.267 1.267 17 H -0.270 1.270 18 H -0.276 1.276 19 C 0.077 3.923 20 O -0.330 6.330 21 H 0.108 0.892 22 H 0.058 0.942 23 H 0.041 0.959 24 H 0.120 0.880 25 H 0.100 0.900 26 H 0.159 0.841 27 H 0.158 0.842 28 H 0.123 0.877 29 H 0.004 0.996 30 H -0.011 1.011 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.259 2.496 16.420 16.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.001 3.999 3 H 0.148 0.852 4 C -0.127 4.127 5 C -0.183 4.183 6 C -0.106 4.106 7 C -0.160 4.160 8 C -0.127 4.127 9 C -0.102 4.102 10 C 0.030 3.970 11 C -0.561 4.561 12 H 0.065 0.935 13 C -0.196 4.196 14 N -0.571 5.571 15 Si 0.792 3.208 16 H -0.191 1.191 17 H -0.195 1.195 18 H -0.201 1.201 19 C 0.033 3.967 20 O -0.245 6.245 21 H 0.127 0.873 22 H 0.077 0.923 23 H 0.060 0.940 24 H 0.138 0.862 25 H 0.118 0.882 26 H 0.177 0.823 27 H 0.175 0.825 28 H 0.141 0.859 29 H 0.022 0.978 30 H 0.008 0.992 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.277 2.625 16.035 16.407 hybrid contribution 0.553 0.172 -1.133 1.272 sum -1.724 2.797 14.902 15.260 Atomic orbital electron populations 1.22212 0.93600 1.02117 1.04080 1.23806 0.95605 0.97070 0.83448 0.85241 1.21863 1.03547 0.89186 0.98095 1.21195 1.07123 0.97488 0.92468 1.20572 0.99289 0.89687 1.01051 1.21316 1.02507 1.00048 0.92104 1.20934 1.00119 0.95403 0.96200 1.19830 1.02226 0.91617 0.96518 1.17905 0.96093 0.95136 0.87881 1.21337 0.94893 1.47571 0.92257 0.93475 1.25965 1.01483 0.95056 0.97105 1.70095 1.32970 1.50811 1.03266 0.85359 0.78961 0.78187 0.78314 1.19126 1.19523 1.20118 1.19616 0.98906 0.84627 0.93586 1.86955 1.80380 1.17363 1.39779 0.87299 0.92337 0.93958 0.86193 0.88215 0.82336 0.82472 0.85915 0.97815 0.99228 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 9.51 71.99 0.68 -3.36 16 2 C 0.06 1.62 4.32 31.18 0.13 1.76 16 3 H 0.13 3.05 8.14 -2.39 -0.02 3.03 16 4 C -0.09 -2.20 6.65 30.73 0.20 -2.00 16 5 C -0.18 -6.07 6.27 -19.52 -0.12 -6.19 16 6 C -0.09 -2.52 10.03 22.18 0.22 -2.30 16 7 C -0.14 -4.39 10.07 22.31 0.22 -4.16 16 8 C -0.11 -4.41 9.64 22.21 0.21 -4.19 16 9 C -0.10 -4.96 5.09 -19.68 -0.10 -5.06 16 10 C 0.07 3.95 5.06 29.10 0.15 4.10 16 11 C -0.52 -32.45 9.09 25.60 0.23 -32.21 16 12 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 13 C 0.00 0.09 5.46 84.66 0.46 0.55 16 14 N -0.93 -59.23 13.29 21.45 0.28 -58.94 16 15 Si 0.97 46.89 29.54 68.60 2.03 48.91 16 16 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 19 C 0.08 3.43 6.62 22.68 0.15 3.58 16 20 O -0.33 -14.64 10.76 -95.02 -1.02 -15.66 16 21 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 22 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 23 H 0.04 1.21 8.08 -2.39 -0.02 1.19 16 24 H 0.12 2.06 7.92 -2.39 -0.02 2.04 16 25 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 27 H 0.16 3.56 8.06 -2.91 -0.02 3.53 16 28 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 29 H 0.00 0.22 8.05 -2.39 -0.02 0.20 16 30 H -0.01 -0.69 8.12 -2.38 -0.02 -0.71 16 31 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -75.50 267.66 4.85 -70.65 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: 1.10 Total: 4.53 kcal Atomic # 6 Polarization: -51.95 SS G_CDS: 2.45 Total: -49.50 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 0.28 Total: -58.94 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -1.02 Total: -15.66 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.91 kcal Total: -75.50 4.85 -70.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258819.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.709 kcal (2) G-P(sol) polarization free energy of solvation -75.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds