Wall clock time and date at job start Mon Mar 30 2020 02:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00026 * 2 1 4 4 H 1.48507 * 109.47129 * 270.00445 * 3 2 1 5 5 H 1.48505 * 109.47079 * 30.00022 * 3 2 1 6 6 H 1.48492 * 109.47455 * 150.00057 * 3 2 1 7 7 C 1.37878 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99963 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99795 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.46679 * 180.02562 * 9 7 2 11 11 C 1.38600 * 120.79616 * 90.00916 * 10 9 7 12 12 N 1.32338 * 119.09972 * 179.97438 * 11 10 9 13 13 C 1.31788 * 120.82292 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.12490 * 180.02562 * 13 12 11 15 15 C 1.53786 * 113.61519 * 140.86404 * 14 13 12 16 16 C 1.54049 * 86.98426 * 140.01979 * 15 14 13 17 17 C 1.53781 * 113.61630 * 238.47352 * 14 13 12 18 18 N 1.31804 * 121.75324 * 0.28129 * 13 12 11 19 19 C 1.32330 * 120.81454 * 359.43965 * 18 13 12 20 20 H 0.97003 * 119.99770 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46787 * 60.00559 * 9 7 2 22 22 H 1.08998 * 109.47147 * 300.00435 * 9 7 2 23 23 H 1.08000 * 120.45001 * 359.97438 * 11 10 9 24 24 H 1.09002 * 112.84782 * 9.66994 * 14 13 12 25 25 H 1.08992 * 113.61675 * 254.61723 * 15 14 13 26 26 H 1.09000 * 113.60973 * 25.52011 * 15 14 13 27 27 H 1.09005 * 113.62125 * 220.02158 * 16 15 14 28 28 H 1.08996 * 113.68970 * 89.12734 * 16 15 14 29 29 H 1.08999 * 113.61567 * 334.48200 * 17 14 13 30 30 H 1.08998 * 113.61196 * 105.38554 * 17 14 13 31 31 H 1.08005 * 120.44775 * 180.25567 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.6914 -4.1840 1.1900 12 7 3.5507 -5.1897 1.1509 13 6 3.9669 -5.6778 -0.0004 14 6 4.9454 -6.8239 -0.0003 15 6 4.6687 -7.8702 -1.0930 16 6 6.1943 -7.9452 -1.2933 17 6 6.2587 -6.5128 -0.7374 18 7 3.5540 -5.1870 -1.1518 19 6 2.6907 -4.1848 -1.1910 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8904 22 1 0.6247 -2.5570 0.8896 23 1 2.3540 -3.7890 2.1369 24 1 5.0921 -7.2552 0.9900 25 1 4.2309 -8.7931 -0.7130 26 1 4.1344 -7.4704 -1.9549 27 1 6.4944 -8.0219 -2.3384 28 1 6.6837 -8.6827 -0.6572 29 1 6.1582 -5.7428 -1.5023 30 1 7.1034 -6.3408 -0.0705 31 1 2.3532 -3.7899 -2.1379 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261261113.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:36 Heat of formation + Delta-G solvation = 48.815622 kcal Electronic energy + Delta-G solvation = -13888.336478 eV Core-core repulsion = 11555.848651 eV Total energy + Delta-G solvation = -2332.487826 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.59663 -38.20050 -33.95300 -33.02959 -31.85971 -28.20364 -25.56877 -25.52354 -23.95016 -23.14509 -21.06197 -19.32064 -17.03973 -16.61245 -16.44788 -15.19024 -14.78532 -14.32478 -14.06392 -13.29578 -12.88702 -12.46915 -12.40064 -12.32218 -11.93858 -11.50302 -11.25530 -10.80184 -10.76662 -10.52794 -10.38179 -10.29510 -10.14604 -9.70609 -9.54063 -8.67782 -8.45468 -8.27440 -6.16848 -4.22277 1.63013 1.72114 3.23908 3.30722 3.34652 4.23673 4.35940 4.38540 4.58898 4.80104 4.88917 5.06390 5.12743 5.18426 5.41004 5.68950 5.73652 5.80202 5.82305 5.91608 5.94541 6.04196 6.22450 6.29008 6.51436 6.67107 7.07517 7.35560 7.47057 7.64314 7.77943 8.13566 8.71010 8.82016 9.43027 10.92843 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.053939 B = 0.005988 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.983925 B = 4674.944936 C = 4837.574315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.057 3.943 10 C -0.135 4.135 11 C 0.133 3.867 12 N -0.521 5.521 13 C 0.286 3.714 14 C -0.042 4.042 15 C -0.124 4.124 16 C -0.140 4.140 17 C -0.124 4.124 18 N -0.516 5.516 19 C 0.133 3.867 20 H 0.264 0.736 21 H 0.035 0.965 22 H 0.035 0.965 23 H 0.163 0.837 24 H 0.106 0.894 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.795 -11.638 -1.304 14.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.074 0.926 9 C 0.019 3.981 10 C -0.138 4.138 11 C -0.033 4.033 12 N -0.234 5.234 13 C 0.018 3.982 14 C -0.062 4.062 15 C -0.162 4.162 16 C -0.177 4.177 17 C -0.162 4.162 18 N -0.230 5.230 19 C -0.032 4.032 20 H 0.074 0.926 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.180 0.820 24 H 0.124 0.876 25 H 0.083 0.917 26 H 0.113 0.887 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.279 -12.264 -1.289 14.853 hybrid contribution -0.293 1.884 0.089 1.908 sum 7.986 -10.380 -1.200 13.152 Atomic orbital electron populations 1.69945 1.06042 1.27123 1.49767 1.24988 0.94897 0.99320 0.94793 0.86503 0.79815 0.82921 0.78304 1.20450 1.20994 1.19807 1.20990 0.92934 0.89705 1.52094 0.92604 1.18248 0.92068 0.88733 0.99037 1.22428 0.99256 0.97970 0.94192 1.23108 0.91015 0.90194 0.98959 1.68105 1.12404 1.12258 1.30629 1.22596 0.95588 0.96019 0.84011 1.21256 0.93070 0.92094 0.99772 1.22976 0.96469 0.97786 0.98994 1.22835 0.96669 0.96989 1.01242 1.22897 0.95978 0.97589 0.99748 1.67952 1.12399 1.12133 1.30473 1.23093 0.90999 0.90202 0.98924 0.92611 0.94708 0.94720 0.82021 0.87560 0.91725 0.88709 0.91316 0.90341 0.89419 0.91534 0.81981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.33 13.29 55.43 0.74 -24.59 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.95 9.09 -34.44 -0.31 -14.27 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.06 1.39 5.15 -29.03 -0.15 1.24 16 10 C -0.13 -2.84 5.10 -104.35 -0.53 -3.37 16 11 C 0.13 2.64 11.01 -17.20 -0.19 2.45 16 12 N -0.52 -10.09 10.33 -10.72 -0.11 -10.20 16 13 C 0.29 5.18 6.88 -157.19 -1.08 4.10 16 14 C -0.04 -0.59 4.15 -90.96 -0.38 -0.97 16 15 C -0.12 -1.51 7.58 -25.77 -0.20 -1.70 16 16 C -0.14 -1.44 8.09 -25.78 -0.21 -1.65 16 17 C -0.12 -1.55 7.60 -25.92 -0.20 -1.74 16 18 N -0.52 -9.65 9.28 -10.73 -0.10 -9.75 16 19 C 0.13 2.61 11.01 -17.20 -0.19 2.42 16 20 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 21 H 0.03 0.87 8.10 -51.93 -0.42 0.45 16 22 H 0.03 0.87 8.10 -51.93 -0.42 0.45 16 23 H 0.16 2.95 8.06 -52.49 -0.42 2.53 16 24 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.09 1.28 7.45 -51.93 -0.39 0.89 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.09 1.23 7.96 -51.93 -0.41 0.81 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.16 2.90 8.06 -52.48 -0.42 2.48 16 LS Contribution 269.38 15.07 4.06 4.06 Total: -1.00 -28.87 269.38 -8.11 -36.98 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -4.14 Total: -0.56 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -3.53 Total: -11.89 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: 0.53 Total: -44.55 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.87 -8.11 -36.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261261113.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.796 kcal (2) G-P(sol) polarization free energy of solvation -28.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds