Wall clock time and date at job start Mon Mar 30 2020 02:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00026 * 2 1 4 4 H 1.48507 * 109.47129 * 270.00445 * 3 2 1 5 5 H 1.48505 * 109.47079 * 30.00022 * 3 2 1 6 6 H 1.48492 * 109.47455 * 150.00057 * 3 2 1 7 7 C 1.37878 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99963 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99795 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.46679 * 180.02562 * 9 7 2 11 11 C 1.38600 * 120.79616 * 90.00916 * 10 9 7 12 12 N 1.32338 * 119.09972 * 179.97438 * 11 10 9 13 13 C 1.31788 * 120.82292 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.12490 * 180.02562 * 13 12 11 15 15 C 1.53786 * 113.61519 * 140.86404 * 14 13 12 16 16 C 1.54049 * 86.98426 * 140.01979 * 15 14 13 17 17 C 1.53781 * 113.61630 * 238.47352 * 14 13 12 18 18 N 1.31804 * 121.75324 * 0.28129 * 13 12 11 19 19 C 1.32330 * 120.81454 * 359.43965 * 18 13 12 20 20 H 0.97003 * 119.99770 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46787 * 60.00559 * 9 7 2 22 22 H 1.08998 * 109.47147 * 300.00435 * 9 7 2 23 23 H 1.08000 * 120.45001 * 359.97438 * 11 10 9 24 24 H 1.09002 * 112.84782 * 9.66994 * 14 13 12 25 25 H 1.08992 * 113.61675 * 254.61723 * 15 14 13 26 26 H 1.09000 * 113.60973 * 25.52011 * 15 14 13 27 27 H 1.09005 * 113.62125 * 220.02158 * 16 15 14 28 28 H 1.08996 * 113.68970 * 89.12734 * 16 15 14 29 29 H 1.08999 * 113.61567 * 334.48200 * 17 14 13 30 30 H 1.08998 * 113.61196 * 105.38554 * 17 14 13 31 31 H 1.08005 * 120.44775 * 180.25567 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.6914 -4.1840 1.1900 12 7 3.5507 -5.1897 1.1509 13 6 3.9669 -5.6778 -0.0004 14 6 4.9454 -6.8239 -0.0003 15 6 4.6687 -7.8702 -1.0930 16 6 6.1943 -7.9452 -1.2933 17 6 6.2587 -6.5128 -0.7374 18 7 3.5540 -5.1870 -1.1518 19 6 2.6907 -4.1848 -1.1910 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8904 22 1 0.6247 -2.5570 0.8896 23 1 2.3540 -3.7890 2.1369 24 1 5.0921 -7.2552 0.9900 25 1 4.2309 -8.7931 -0.7130 26 1 4.1344 -7.4704 -1.9549 27 1 6.4944 -8.0219 -2.3384 28 1 6.6837 -8.6827 -0.6572 29 1 6.1582 -5.7428 -1.5023 30 1 7.1034 -6.3408 -0.0705 31 1 2.3532 -3.7899 -2.1379 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261261113.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:36 Heat of formation + Delta-G solvation = 33.204934 kcal Electronic energy + Delta-G solvation = -13889.013408 eV Core-core repulsion = 11555.848651 eV Total energy + Delta-G solvation = -2333.164757 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.06882 -39.28087 -35.83481 -34.56308 -33.68961 -29.87321 -27.10740 -26.48924 -25.48911 -24.78719 -22.66532 -20.37147 -18.58320 -18.47811 -17.94125 -16.72114 -16.16592 -15.82721 -15.33224 -15.02779 -14.40519 -14.38163 -13.52931 -13.45772 -13.32986 -13.16151 -12.94805 -12.64627 -12.39328 -11.78526 -11.71906 -11.67552 -11.44694 -11.27232 -11.13366 -10.66431 -10.10378 -9.91696 -8.24948 -6.37802 0.08057 0.15197 1.39766 1.40622 1.51305 2.37347 2.81967 3.03615 3.07694 3.24485 3.78725 3.84428 3.85730 4.02625 4.06238 4.17974 4.24844 4.67305 4.77478 4.85933 4.94983 5.00390 5.08028 5.14845 5.27419 5.28852 5.53866 5.55207 5.65451 5.67588 6.06304 6.11208 6.73033 7.18716 7.31506 8.84667 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.053939 B = 0.005988 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.983925 B = 4674.944936 C = 4837.574315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.014 3.986 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.049 0.951 9 C 0.069 3.931 10 C -0.157 4.157 11 C 0.133 3.867 12 N -0.529 5.529 13 C 0.286 3.714 14 C -0.054 4.054 15 C -0.122 4.122 16 C -0.121 4.121 17 C -0.125 4.125 18 N -0.517 5.517 19 C 0.135 3.865 20 H 0.267 0.733 21 H 0.018 0.982 22 H 0.017 0.983 23 H 0.173 0.827 24 H 0.118 0.882 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.522 -12.527 -1.422 15.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.186 4.186 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.571 4.571 8 H 0.068 0.932 9 C 0.031 3.969 10 C -0.161 4.161 11 C -0.032 4.032 12 N -0.243 5.243 13 C 0.019 3.981 14 C -0.074 4.074 15 C -0.161 4.161 16 C -0.158 4.158 17 C -0.163 4.163 18 N -0.230 5.230 19 C -0.030 4.030 20 H 0.076 0.924 21 H 0.037 0.963 22 H 0.036 0.964 23 H 0.190 0.810 24 H 0.136 0.864 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.120 0.880 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 10.014 -13.166 -1.410 16.602 hybrid contribution -0.809 2.074 0.129 2.230 sum 9.205 -11.092 -1.281 14.471 Atomic orbital electron populations 1.70046 1.07449 1.28139 1.50627 1.25795 0.95687 1.02733 0.94340 0.85498 0.78529 0.78788 0.78560 1.19701 1.20362 1.19479 1.21270 0.92815 0.91143 1.51912 0.93221 1.17952 0.92192 0.89408 0.97341 1.22126 1.00249 0.98281 0.95471 1.23276 0.90758 0.90149 0.99032 1.68239 1.12597 1.12236 1.31190 1.23539 0.94989 0.96151 0.83459 1.21616 0.93040 0.91399 1.01321 1.22957 0.98110 0.97496 0.97496 1.22799 0.94983 0.95709 1.02340 1.22892 0.95280 0.98782 0.99363 1.68094 1.12302 1.11880 1.30729 1.23287 0.90672 0.90107 0.98954 0.92354 0.96323 0.96426 0.81035 0.86358 0.90184 0.90345 0.90239 0.87962 0.91274 0.90308 0.80849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.14 13.29 21.45 0.28 -52.86 16 2 C 0.01 0.75 5.46 84.65 0.46 1.22 16 3 Si 0.96 42.94 29.54 68.60 2.03 44.96 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.53 -29.06 9.09 25.60 0.23 -28.83 16 8 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 9 C 0.07 3.46 5.15 29.10 0.15 3.61 16 10 C -0.16 -6.73 5.10 -19.69 -0.10 -6.83 16 11 C 0.13 5.30 11.01 84.70 0.93 6.24 16 12 N -0.53 -20.09 10.33 -187.84 -1.94 -22.03 16 13 C 0.29 10.06 6.88 138.75 0.95 11.01 16 14 C -0.05 -1.41 4.15 -11.01 -0.05 -1.45 16 15 C -0.12 -2.66 7.58 31.21 0.24 -2.42 16 16 C -0.12 -2.07 8.09 31.21 0.25 -1.81 16 17 C -0.12 -2.82 7.60 31.12 0.24 -2.58 16 18 N -0.52 -18.98 9.28 -187.84 -1.74 -20.73 16 19 C 0.14 5.31 11.01 84.70 0.93 6.24 16 20 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 21 H 0.02 0.97 8.10 -2.39 -0.02 0.95 16 22 H 0.02 0.92 8.10 -2.39 -0.02 0.90 16 23 H 0.17 6.31 8.06 -2.91 -0.02 6.29 16 24 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 25 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.08 1.98 7.45 -2.39 -0.02 1.97 16 27 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.83 7.96 -2.39 -0.02 1.81 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.17 6.24 8.06 -2.91 -0.02 6.21 16 Total: -1.00 -60.94 269.38 3.98 -56.96 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.11 Total: 9.31 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: 4.24 Total: -15.62 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -3.40 Total: -95.61 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -60.94 3.98 -56.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261261113.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.162 kcal (2) G-P(sol) polarization free energy of solvation -60.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds