Wall clock time and date at job start Mon Mar 30 2020 02:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00384 * 2 1 4 4 H 1.48504 * 109.47010 * 269.99968 * 3 2 1 5 5 H 1.48503 * 109.47178 * 29.99729 * 3 2 1 6 6 H 1.48494 * 109.47003 * 149.99746 * 3 2 1 7 7 C 1.37876 * 119.99582 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00290 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99892 * 180.02562 * 7 2 1 10 10 H 1.08992 * 109.88050 * 62.83691 * 9 7 2 11 11 N 1.47442 * 109.88554 * 301.63190 * 9 7 2 12 12 C 1.47844 * 108.57110 * 239.60258 * 11 9 7 13 13 C 1.54906 * 104.79332 * 24.10504 * 12 11 9 14 14 C 1.54321 * 109.88870 * 183.86743 * 9 7 2 15 15 H 1.08994 * 110.70776 * 215.67892 * 14 9 7 16 16 C 1.50704 * 110.70505 * 338.74245 * 14 9 7 17 17 C 1.38667 * 120.42338 * 86.74065 * 16 14 9 18 18 C 1.38627 * 118.41955 * 180.26396 * 17 16 14 19 19 C 1.38233 * 119.16274 * 359.48331 * 18 17 16 20 20 N 1.31855 * 120.75996 * 0.25565 * 19 18 17 21 21 C 1.31887 * 121.72609 * 0.02562 * 20 19 18 22 22 H 0.96999 * 119.99140 * 0.02562 * 1 2 3 23 23 H 1.00901 * 111.00440 * 1.88279 * 11 9 7 24 24 H 1.09005 * 110.36859 * 142.92589 * 12 11 9 25 25 H 1.09000 * 110.37756 * 265.16125 * 12 11 9 26 26 H 1.09006 * 110.98917 * 204.84010 * 13 12 11 27 27 H 1.08996 * 110.99861 * 81.01588 * 13 12 11 28 28 H 1.08002 * 120.78954 * 0.02918 * 17 16 14 29 29 H 1.08002 * 120.42030 * 179.76344 * 18 17 16 30 30 H 1.07997 * 119.61903 * 180.27621 * 19 18 17 31 31 H 1.08000 * 119.61254 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8818 -0.7261 0.9131 11 7 4.0135 -0.4673 -1.1794 12 6 4.8408 -1.3910 -1.9844 13 6 4.3320 -2.8056 -1.6105 14 6 4.0365 -2.6421 -0.0962 15 1 4.9461 -2.7626 0.4920 16 6 2.9821 -3.6222 0.3496 17 6 2.0415 -4.0995 -0.5506 18 6 1.0870 -4.9955 -0.0946 19 6 1.1110 -5.3888 1.2304 20 7 2.0240 -4.9182 2.0571 21 6 2.9436 -4.0605 1.6595 22 1 -0.4849 0.8401 -0.0004 23 1 3.2514 -0.0947 -1.7257 24 1 4.6931 -1.2036 -3.0480 25 1 5.8935 -1.2832 -1.7234 26 1 5.1050 -3.5556 -1.7786 27 1 3.4243 -3.0524 -2.1611 28 1 2.0500 -3.7780 -1.5816 29 1 0.3369 -5.3848 -0.7671 30 1 0.3736 -6.0899 1.5924 31 1 3.6750 -3.6967 2.3659 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261267265.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:25 Heat of formation + Delta-G solvation = 43.685291 kcal Electronic energy + Delta-G solvation = -14877.548763 eV Core-core repulsion = 12544.838469 eV Total energy + Delta-G solvation = -2332.710294 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.88421 -37.64969 -32.52151 -32.39942 -31.18341 -29.11048 -27.69819 -24.50625 -22.98138 -22.31689 -20.67458 -19.00741 -17.27519 -16.41964 -15.71926 -15.35491 -14.55239 -14.15807 -13.81156 -13.35539 -13.06752 -12.71867 -12.45578 -12.32249 -11.74758 -11.24253 -11.13743 -10.80006 -10.69433 -10.34233 -9.99510 -9.69316 -9.57254 -8.85902 -8.82275 -8.64463 -8.08911 -7.45591 -6.12088 -4.19519 1.79560 1.97622 3.37043 3.43666 3.60864 4.43526 4.45346 4.96223 5.06961 5.19696 5.31832 5.45606 5.54547 5.60081 5.71330 5.78274 5.90069 6.04221 6.15078 6.27247 6.32914 6.36365 6.51773 6.64476 6.78632 6.99365 7.29908 7.35223 7.47831 7.91349 8.20512 8.57911 8.58973 8.92622 9.47534 10.97216 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.027717 B = 0.012801 C = 0.010158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.953084 B = 2186.863162 C = 2755.812817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.074 3.926 3 Si 0.892 3.108 4 H -0.279 1.279 5 H -0.303 1.303 6 H -0.256 1.256 7 C -0.546 4.546 8 H 0.091 0.909 9 C 0.177 3.823 10 H 0.049 0.951 11 N -0.696 5.696 12 C 0.050 3.950 13 C -0.144 4.144 14 C -0.057 4.057 15 H 0.072 0.928 16 C -0.067 4.067 17 C -0.058 4.058 18 C -0.174 4.174 19 C 0.075 3.925 20 N -0.489 5.489 21 C 0.089 3.911 22 H 0.264 0.736 23 H 0.337 0.663 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.130 0.870 29 H 0.124 0.876 30 H 0.144 0.856 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.230 -6.906 -2.806 9.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.130 4.130 3 Si 0.721 3.279 4 H -0.205 1.205 5 H -0.231 1.231 6 H -0.180 1.180 7 C -0.584 4.584 8 H 0.109 0.891 9 C 0.070 3.930 10 H 0.066 0.934 11 N -0.328 5.328 12 C -0.079 4.079 13 C -0.183 4.183 14 C -0.077 4.077 15 H 0.090 0.910 16 C -0.070 4.070 17 C -0.084 4.084 18 C -0.194 4.194 19 C -0.083 4.083 20 N -0.197 5.197 21 C -0.067 4.067 22 H 0.074 0.926 23 H 0.156 0.844 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.148 0.852 29 H 0.142 0.858 30 H 0.161 0.839 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.612 -6.739 -1.587 9.574 hybrid contribution -0.563 0.779 -1.312 1.627 sum 6.049 -5.960 -2.899 8.973 Atomic orbital electron populations 1.69933 1.06514 1.27203 1.49325 1.25100 0.94780 0.99478 0.93626 0.86615 0.80193 0.82468 0.78672 1.20492 1.23078 1.17971 1.21799 0.89029 0.95407 1.52199 0.89086 1.20233 0.95405 0.86682 0.90688 0.93369 1.62339 1.26035 1.34692 1.09773 1.22709 0.98107 0.90576 0.96535 1.23219 1.00802 0.98169 0.96097 1.21298 0.95112 0.95961 0.95361 0.90984 1.20445 0.96986 0.95034 0.94497 1.21402 0.93001 0.93669 1.00349 1.21980 0.99914 0.99969 0.97492 1.22455 0.96647 0.98893 0.90283 1.67540 1.03568 1.10829 1.37802 1.22406 0.96508 0.94056 0.93745 0.92627 0.84440 0.92843 0.91876 0.92160 0.90908 0.85189 0.85781 0.83870 0.83725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 2 C 0.07 2.06 5.33 -17.82 -0.09 1.97 16 3 Si 0.89 21.92 25.09 -169.99 -4.26 17.66 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 6 H -0.26 -6.25 6.63 56.52 0.37 -5.88 16 7 C -0.55 -14.36 8.42 -34.44 -0.29 -14.65 16 8 H 0.09 2.54 4.58 -52.49 -0.24 2.30 16 9 C 0.18 3.98 2.74 -67.87 -0.19 3.79 16 10 H 0.05 1.16 7.41 -51.93 -0.38 0.78 16 11 N -0.70 -14.69 5.81 -105.03 -0.61 -15.30 16 12 C 0.05 0.85 7.57 -2.30 -0.02 0.84 16 13 C -0.14 -2.36 6.28 -24.59 -0.15 -2.51 16 14 C -0.06 -1.07 3.11 -89.94 -0.28 -1.35 16 15 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 16 C -0.07 -1.30 3.64 -104.48 -0.38 -1.68 16 17 C -0.06 -1.09 7.15 -39.28 -0.28 -1.37 16 18 C -0.17 -3.00 10.11 -39.44 -0.40 -3.40 16 19 C 0.07 1.30 11.18 -17.54 -0.20 1.11 16 20 N -0.49 -9.46 10.36 -13.25 -0.14 -9.60 16 21 C 0.09 1.71 10.88 -17.55 -0.19 1.52 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.34 7.57 6.25 -39.29 -0.25 7.33 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.23 5.64 -51.93 -0.29 0.93 16 28 H 0.13 2.35 5.91 -52.49 -0.31 2.04 16 29 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 30 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 31 H 0.15 2.48 8.06 -52.49 -0.42 2.05 16 LS Contribution 247.28 15.07 3.73 3.73 Total: -1.00 -30.16 247.28 -6.58 -36.74 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -3.59 Total: 8.36 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -2.47 Total: -15.74 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.03 Total: -50.74 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.26 Total: 17.66 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.16 -6.58 -36.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261267265.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.423 kcal (2) G-P(sol) polarization free energy of solvation -30.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds